More than 300 homologs were found in PanDaTox collection
for query gene Avi_3459 on replicon NC_011989
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011989  Avi_3459  ABC transporter  100 
 
 
288 aa  569  1e-161  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2371  binding-protein-dependent transport systems inner membrane component  77 
 
 
294 aa  428  1e-119  Sinorhizobium medicae WSM419  Bacteria  normal  0.91742  normal  0.325627 
 
 
-
 
NC_009428  Rsph17025_1464  binding-protein-dependent transport systems inner membrane component  68.77 
 
 
287 aa  398  9.999999999999999e-111  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0181  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  70.18 
 
 
311 aa  390  1e-107  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.121482  n/a   
 
 
-
 
NC_009049  Rsph17029_1814  binding-protein-dependent transport systems inner membrane component  69.82 
 
 
287 aa  389  1e-107  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0476587  normal  0.305557 
 
 
-
 
NC_008254  Meso_2045  binding-protein-dependent transport systems inner membrane component  70.98 
 
 
312 aa  379  1e-104  Chelativorans sp. BNC1  Bacteria  normal  0.613322  n/a   
 
 
-
 
NC_009667  Oant_0345  binding-protein-dependent transport systems inner membrane component  66.32 
 
 
297 aa  380  1e-104  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1372  binding-protein-dependent transport systems inner membrane component  62.88 
 
 
305 aa  375  1e-103  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.856164  normal  0.860518 
 
 
-
 
NC_011369  Rleg2_3041  binding-protein-dependent transport systems inner membrane component  58.8 
 
 
314 aa  360  1e-98  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.819345  normal 
 
 
-
 
NC_012850  Rleg_3296  binding-protein-dependent transport systems inner membrane component  58.14 
 
 
309 aa  357  9e-98  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.913784  normal  0.0841796 
 
 
-
 
NC_008044  TM1040_1495  binding-protein-dependent transport systems inner membrane component  61.46 
 
 
305 aa  336  2.9999999999999997e-91  Ruegeria sp. TM1040  Bacteria  normal  0.473602  normal 
 
 
-
 
NC_007802  Jann_2701  binding-protein-dependent transport systems inner membrane component  60.87 
 
 
315 aa  332  3e-90  Jannaschia sp. CCS1  Bacteria  normal  0.725502  normal  0.78823 
 
 
-
 
NC_010725  Mpop_1082  binding-protein-dependent transport systems inner membrane component  59.65 
 
 
305 aa  322  4e-87  Methylobacterium populi BJ001  Bacteria  normal  0.779888  normal  0.0329883 
 
 
-
 
NC_010172  Mext_1732  binding-protein-dependent transport systems inner membrane component  60.49 
 
 
302 aa  319  3e-86  Methylobacterium extorquens PA1  Bacteria  normal  0.244285  normal 
 
 
-
 
NC_011757  Mchl_2051  binding-protein-dependent transport systems inner membrane component  60.14 
 
 
305 aa  312  4.999999999999999e-84  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.418777 
 
 
-
 
NC_007643  Rru_A3454  binding-protein dependent transport system inner membrane protein  55.48 
 
 
298 aa  311  5.999999999999999e-84  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0036  binding-protein-dependent transport systems inner membrane component  47.7 
 
 
292 aa  281  7.000000000000001e-75  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6032  putative ABC transporter, permease protein  60.82 
 
 
285 aa  270  2e-71  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2100  binding-protein-dependent transport systems inner membrane component  40.45 
 
 
275 aa  204  1e-51  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1884  binding-protein-dependent transport systems inner membrane component  40.65 
 
 
307 aa  192  7e-48  Meiothermus ruber DSM 1279  Bacteria  normal  0.665089  normal  0.160596 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
268 aa  140  1.9999999999999998e-32  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  33.48 
 
 
258 aa  127  3e-28  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  35.11 
 
 
246 aa  126  4.0000000000000003e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  37.37 
 
 
274 aa  124  1e-27  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  38.62 
 
 
281 aa  124  2e-27  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  37.17 
 
 
273 aa  122  8e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
283 aa  121  9.999999999999999e-27  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  39.51 
 
 
273 aa  120  3e-26  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  37.43 
 
 
254 aa  119  6e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  35.19 
 
 
257 aa  118  9.999999999999999e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  36.07 
 
 
257 aa  117  1.9999999999999998e-25  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  34.09 
 
 
265 aa  116  5e-25  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  32.89 
 
 
264 aa  115  1.0000000000000001e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_012852  Rleg_6281  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
256 aa  114  2.0000000000000002e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.783663  normal 
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
264 aa  114  2.0000000000000002e-24  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
264 aa  113  4.0000000000000004e-24  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  30.77 
 
 
298 aa  112  5e-24  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_013521  Sked_24180  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  35.68 
 
 
302 aa  112  5e-24  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  32.8 
 
 
282 aa  112  5e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_011831  Cagg_1308  binding-protein-dependent transport systems inner membrane component  35.76 
 
 
254 aa  112  7.000000000000001e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0000169849 
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  36.84 
 
 
258 aa  111  1.0000000000000001e-23  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  33.84 
 
 
250 aa  111  2.0000000000000002e-23  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  32.86 
 
 
254 aa  110  2.0000000000000002e-23  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_011369  Rleg2_3645  binding-protein-dependent transport systems inner membrane component  32.63 
 
 
268 aa  109  5e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  32.55 
 
 
251 aa  109  5e-23  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  29.75 
 
 
282 aa  109  7.000000000000001e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  31.22 
 
 
266 aa  109  7.000000000000001e-23  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  32.49 
 
 
253 aa  108  1e-22  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  30.41 
 
 
263 aa  107  2e-22  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  30.77 
 
 
266 aa  106  4e-22  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  31.2 
 
 
268 aa  106  5e-22  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  34.39 
 
 
288 aa  105  8e-22  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  29.02 
 
 
257 aa  105  9e-22  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  31.68 
 
 
254 aa  105  1e-21  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  34.22 
 
 
251 aa  104  2e-21  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_009485  BBta_1263  ABC transporter permease  30.13 
 
 
262 aa  103  2e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.165267 
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  34.22 
 
 
251 aa  104  2e-21  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_009668  Oant_3871  binding-protein-dependent transport systems inner membrane component  32.33 
 
 
280 aa  104  2e-21  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.208081  n/a   
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  32.8 
 
 
250 aa  103  3e-21  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  36.11 
 
 
258 aa  103  3e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_014212  Mesil_2099  binding-protein-dependent transport systems inner membrane component  32.21 
 
 
306 aa  103  4e-21  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  32.8 
 
 
250 aa  103  4e-21  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  34.22 
 
 
250 aa  102  5e-21  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  32.8 
 
 
250 aa  102  5e-21  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  34.22 
 
 
250 aa  102  5e-21  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  34.22 
 
 
250 aa  102  6e-21  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  29.83 
 
 
279 aa  102  6e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  35.52 
 
 
249 aa  102  7e-21  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2046  binding-protein-dependent transport systems inner membrane component  35.45 
 
 
286 aa  102  7e-21  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
251 aa  102  7e-21  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  33.66 
 
 
259 aa  102  8e-21  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  34.15 
 
 
260 aa  101  1e-20  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_008312  Tery_1625  binding-protein-dependent transport systems inner membrane component  32.8 
 
 
285 aa  102  1e-20  Trichodesmium erythraeum IMS101  Bacteria  normal  0.0792607  normal  0.95709 
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  34.22 
 
 
250 aa  101  2e-20  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_012791  Vapar_3961  binding-protein-dependent transport systems inner membrane component  32.59 
 
 
256 aa  101  2e-20  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_0033  binding-protein-dependent transport systems inner membrane component  32.31 
 
 
243 aa  101  2e-20  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  29.1 
 
 
261 aa  100  3e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  35.8 
 
 
284 aa  100  3e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3112  binding-protein-dependent transport systems inner membrane component  36.07 
 
 
253 aa  100  4e-20  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0371548 
 
 
-
 
NC_012850  Rleg_3934  binding-protein-dependent transport systems inner membrane component  30.7 
 
 
278 aa  100  4e-20  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.421742  normal 
 
 
-
 
NC_009953  Sare_4268  binding-protein-dependent transport systems inner membrane component  33.51 
 
 
282 aa  99.8  4e-20  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0113678 
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  30.15 
 
 
308 aa  99.4  6e-20  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  28.51 
 
 
281 aa  98.2  1e-19  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3124  binding-protein-dependent transport systems inner membrane component  31.86 
 
 
255 aa  98.2  1e-19  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  32.74 
 
 
247 aa  97.8  2e-19  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_009380  Strop_3877  binding-protein-dependent transport systems inner membrane component  33.9 
 
 
282 aa  97.8  2e-19  Salinispora tropica CNB-440  Bacteria  normal  0.901388  normal 
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  30.65 
 
 
271 aa  97.1  3e-19  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009674  Bcer98_0370  binding-protein-dependent transport systems inner membrane component  31.53 
 
 
256 aa  97.4  3e-19  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  33.16 
 
 
255 aa  96.7  4e-19  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  31.77 
 
 
257 aa  96.7  4e-19  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3116  binding-protein-dependent transport systems inner membrane component  33.04 
 
 
272 aa  96.3  5e-19  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.025765  normal 
 
 
-
 
NC_009636  Smed_2372  binding-protein-dependent transport systems inner membrane component  33.86 
 
 
289 aa  96.3  5e-19  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.239724 
 
 
-
 
NC_009767  Rcas_2389  binding-protein-dependent transport systems inner membrane component  33.15 
 
 
275 aa  96.3  5e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1473  binding-protein-dependent transport systems inner membrane component  30.21 
 
 
283 aa  95.9  6e-19  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  31.77 
 
 
255 aa  96.3  6e-19  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  34.42 
 
 
267 aa  96.3  6e-19  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_011989  Avi_3552  ABC transporter membrane spanning protein  29.56 
 
 
285 aa  95.9  7e-19  Agrobacterium vitis S4  Bacteria  normal  0.0625026  n/a   
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  31.25 
 
 
265 aa  95.1  1e-18  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  31.25 
 
 
257 aa  95.1  1e-18  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  31.25 
 
 
257 aa  95.1  1e-18  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
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