More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_2808 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0370  acyl-CoA dehydrogenase domain-containing protein  69.59 
 
 
592 aa  851    Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3554  acyl-CoA dehydrogenase domain-containing protein  63.91 
 
 
589 aa  750    Pseudomonas putida KT2440  Bacteria  normal  0.244117  normal 
 
 
-
 
NC_003910  CPS_4476  acyl-CoA dehydrogenase family protein  56.43 
 
 
602 aa  677    Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0506  acyl-CoA dehydrogenase family protein  68.92 
 
 
592 aa  857    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4677  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  69.59 
 
 
592 aa  863    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0983724  normal 
 
 
-
 
NC_009512  Pput_0396  acyl-CoA dehydrogenase domain-containing protein  69.43 
 
 
592 aa  850    Pseudomonas putida F1  Bacteria  normal  0.352257  normal 
 
 
-
 
NC_010322  PputGB1_2808  acyl-CoA dehydrogenase domain-containing protein  100 
 
 
592 aa  1206    Pseudomonas putida GB-1  Bacteria  normal  0.566358  normal 
 
 
-
 
NC_009656  PSPA7_0899  putative acyl-CoA dehydrogenase  68.63 
 
 
593 aa  791    Pseudomonas aeruginosa PA7  Bacteria  normal  0.183433  n/a   
 
 
-
 
NC_009512  Pput_2665  acyl-CoA dehydrogenase domain-containing protein  92.4 
 
 
592 aa  1119    Pseudomonas putida F1  Bacteria  normal  0.755851  normal 
 
 
-
 
NC_009439  Pmen_4079  acyl-CoA dehydrogenase domain-containing protein  74.83 
 
 
592 aa  930    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_06640  putative acyl-CoA dehydrogenase  74.83 
 
 
592 aa  914    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5166  Acyl-CoA dehydrogenase-like  71.79 
 
 
592 aa  888    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.164353 
 
 
-
 
NC_009656  PSPA7_0609  putative acyl-CoA dehydrogenase  74.66 
 
 
592 aa  910    Pseudomonas aeruginosa PA7  Bacteria  normal  0.666513  n/a   
 
 
-
 
NC_009439  Pmen_3819  acyl-CoA dehydrogenase domain-containing protein  65.09 
 
 
590 aa  784    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_25210  acyl-CoA dehydrogenase  66.84 
 
 
591 aa  773    Azotobacter vinelandii DJ  Bacteria  normal  0.885326  n/a   
 
 
-
 
NC_007912  Sde_3132  acyl-CoA dehydrogenase family protein  56.41 
 
 
589 aa  658    Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0400  acyl-CoA dehydrogenase domain-containing protein  69.59 
 
 
592 aa  850    Pseudomonas putida GB-1  Bacteria  normal  normal  0.672876 
 
 
-
 
NC_008740  Maqu_2749  acyl-CoA dehydrogenase domain-containing protein  61.58 
 
 
596 aa  750    Marinobacter aquaeolei VT8  Bacteria  normal  0.59666  n/a   
 
 
-
 
NC_010501  PputW619_4832  acyl-CoA dehydrogenase domain-containing protein  68.07 
 
 
592 aa  836    Pseudomonas putida W619  Bacteria  normal  normal  0.946881 
 
 
-
 
NC_008463  PA14_09630  putative acyl-CoA dehydrogenase  68.47 
 
 
593 aa  812    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.806665  normal 
 
 
-
 
NC_009512  Pput_2220  acyl-CoA dehydrogenase domain-containing protein  63.91 
 
 
594 aa  748    Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2368  acyl-CoA dehydrogenase domain-containing protein  64.42 
 
 
589 aa  758    Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1754  acyl-CoA dehydrogenase domain-containing protein  55.22 
 
 
594 aa  634  1e-180  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.0420795 
 
 
-
 
NC_007492  Pfl01_5167  Acyl-CoA dehydrogenase-like  54.45 
 
 
598 aa  625  1e-178  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0783661 
 
 
-
 
NC_011666  Msil_1741  acyl-CoA dehydrogenase domain protein  55.86 
 
 
594 aa  625  1e-178  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008463  PA14_06620  putative acyl-CoA dehydrogenase  55.67 
 
 
598 aa  623  1e-177  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0607  putative acyl-CoA dehydrogenase  55.5 
 
 
598 aa  623  1e-177  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1308  Acyl-CoA dehydrogenase  55.08 
 
 
596 aa  616  1e-175  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.135322  n/a   
 
 
-
 
NC_010508  Bcenmc03_2748  acyl-CoA dehydrogenase domain-containing protein  53.23 
 
 
595 aa  615  1e-175  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.139086  normal 
 
 
-
 
NC_008060  Bcen_2109  acyl-CoA dehydrogenase-like  53.23 
 
 
595 aa  615  1e-175  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2721  acyl-CoA dehydrogenase domain-containing protein  53.23 
 
 
595 aa  615  1e-175  Burkholderia cenocepacia HI2424  Bacteria  normal  0.440911  n/a   
 
 
-
 
NC_010682  Rpic_0348  acyl-CoA dehydrogenase domain protein  53.12 
 
 
595 aa  612  9.999999999999999e-175  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA0197  acyl-CoA dehydrogenase domain-containing protein  53.23 
 
 
595 aa  613  9.999999999999999e-175  Burkholderia mallei ATCC 23344  Bacteria  normal  0.908056  n/a   
 
 
-
 
NC_007434  BURPS1710b_0857  acyl-CoA dehydrogenase domain-containing protein  53.06 
 
 
595 aa  612  9.999999999999999e-175  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0680  acyl-CoA dehydrogenase domain-containing protein  53.06 
 
 
595 aa  612  9.999999999999999e-175  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0695  acyl-CoA dehydrogenase domain-containing protein  53.06 
 
 
595 aa  612  9.999999999999999e-175  Burkholderia pseudomallei 1106a  Bacteria  normal  0.832914  n/a   
 
 
-
 
NC_009080  BMA10247_2410  acyl-CoA dehydrogenase domain-containing protein  53.23 
 
 
595 aa  613  9.999999999999999e-175  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2748  acyl-CoA dehydrogenase domain-containing protein  53.23 
 
 
595 aa  613  9.999999999999999e-175  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2330  acyl-CoA dehydrogenase domain-containing protein  53.23 
 
 
595 aa  613  9.999999999999999e-175  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0578  acyl-CoA dehydrogenase domain-containing protein  53.14 
 
 
595 aa  610  1e-173  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A6048  Acyl-CoA dehydrogenase-like  53.06 
 
 
599 aa  611  1e-173  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0564  acyl-CoA dehydrogenase domain-containing protein  52.72 
 
 
595 aa  611  1e-173  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2639  acyl-CoA dehydrogenase domain-containing protein  53.23 
 
 
595 aa  610  1e-173  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0601004  normal  0.257028 
 
 
-
 
NC_003295  RSc0473  putative acyl-CoA dehydrogenase oxidoreductase protein  52.78 
 
 
595 aa  606  9.999999999999999e-173  Ralstonia solanacearum GMI1000  Bacteria  normal  0.390432  normal 
 
 
-
 
NC_007954  Sden_1761  acyl-CoA dehydrogenase-like protein  54.58 
 
 
583 aa  605  9.999999999999999e-173  Shewanella denitrificans OS217  Bacteria  normal  0.170818  n/a   
 
 
-
 
NC_012856  Rpic12D_0363  acyl-CoA dehydrogenase domain protein  52.78 
 
 
595 aa  607  9.999999999999999e-173  Ralstonia pickettii 12D  Bacteria  normal  0.84094  normal 
 
 
-
 
NC_010002  Daci_1337  acyl-CoA dehydrogenase domain-containing protein  52.61 
 
 
601 aa  602  1.0000000000000001e-171  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_0911  acyl-CoA dehydrogenase domain-containing protein  52.99 
 
 
594 aa  604  1.0000000000000001e-171  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_2389  acyl-CoA dehydrogenase domain-containing protein  53.99 
 
 
585 aa  598  1e-170  Shewanella baltica OS195  Bacteria  hitchhiker  0.0000323201  unclonable  0.0000144504 
 
 
-
 
NC_010622  Bphy_0385  acyl-CoA dehydrogenase domain-containing protein  52.38 
 
 
595 aa  600  1e-170  Burkholderia phymatum STM815  Bacteria  normal  0.840786  normal  0.461604 
 
 
-
 
NC_009438  Sputcn32_2035  acyl-CoA dehydrogenase domain-containing protein  53.27 
 
 
585 aa  599  1e-170  Shewanella putrefaciens CN-32  Bacteria  normal  0.0140722  n/a   
 
 
-
 
NC_007973  Rmet_0385  acyl-CoA dehydrogenase-like protein  52.61 
 
 
595 aa  600  1e-170  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.13259 
 
 
-
 
NC_009052  Sbal_2077  acyl-CoA dehydrogenase domain-containing protein  53.82 
 
 
585 aa  597  1e-169  Shewanella baltica OS155  Bacteria  unclonable  0.0000000861325  n/a   
 
 
-
 
NC_007347  Reut_A0446  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  52.78 
 
 
595 aa  597  1e-169  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A4038  putative acyl-CoA dehydrogenase oxidoreductase  52.38 
 
 
595 aa  595  1e-169  Burkholderia xenovorans LB400  Bacteria  normal  0.922091  normal  0.0585748 
 
 
-
 
NC_009665  Shew185_2272  acyl-CoA dehydrogenase domain-containing protein  53.82 
 
 
585 aa  597  1e-169  Shewanella baltica OS185  Bacteria  decreased coverage  0.00000131801  n/a   
 
 
-
 
NC_008322  Shewmr7_2047  acyl-CoA dehydrogenase domain-containing protein  54.48 
 
 
585 aa  596  1e-169  Shewanella sp. MR-7  Bacteria  unclonable  0.0000359523  hitchhiker  0.00243914 
 
 
-
 
NC_010681  Bphyt_0661  acyl-CoA dehydrogenase domain protein  52.2 
 
 
595 aa  594  1e-168  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_01173  acyl-CoA dehydrogenase  52.6 
 
 
597 aa  594  1e-168  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.520854  n/a   
 
 
-
 
NC_007492  Pfl01_5170  Acyl-CoA dehydrogenase-like  50.68 
 
 
601 aa  592  1e-168  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.131109  normal  0.317042 
 
 
-
 
NC_007969  Pcryo_1453  acyl-CoA dehydrogenase-like  53.16 
 
 
594 aa  593  1e-168  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1984  acyl-CoA dehydrogenase domain-containing protein  53.81 
 
 
585 aa  592  1e-168  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000000742093  hitchhiker  0.00000000303591 
 
 
-
 
NC_011663  Sbal223_2073  acyl-CoA dehydrogenase domain protein  53.57 
 
 
585 aa  593  1e-168  Shewanella baltica OS223  Bacteria  decreased coverage  0.0000286004  hitchhiker  0.00000000164585 
 
 
-
 
NC_008321  Shewmr4_1931  acyl-CoA dehydrogenase domain-containing protein  54.15 
 
 
585 aa  593  1e-168  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00101819  hitchhiker  0.00000000203538 
 
 
-
 
NC_010531  Pnec_0962  acyl-CoA dehydrogenase domain protein  51.94 
 
 
595 aa  592  1e-168  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_0964  putative acyl-CoA dehydrogenase  53.16 
 
 
594 aa  590  1e-167  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.295286 
 
 
-
 
NC_012791  Vapar_0810  acyl-CoA dehydrogenase domain protein  51.86 
 
 
598 aa  590  1e-167  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0592  acyl-CoA dehydrogenase domain-containing protein  51.18 
 
 
598 aa  591  1e-167  Acidovorax sp. JS42  Bacteria  normal  normal  0.559108 
 
 
-
 
NC_002947  PP_0368  acyl-CoA dehydrogenase domain-containing protein  49.66 
 
 
601 aa  587  1e-166  Pseudomonas putida KT2440  Bacteria  normal  0.335716  normal 
 
 
-
 
NC_004347  SO_2395  acyl-CoA dehydrogenase family protein  53.47 
 
 
585 aa  586  1e-166  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_4681  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  50 
 
 
601 aa  587  1e-166  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2777  acyl-CoA dehydrogenase domain protein  53.54 
 
 
596 aa  587  1e-166  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.932954  normal 
 
 
-
 
NC_010322  PputGB1_0398  acyl-CoA dehydrogenase domain-containing protein  49.66 
 
 
601 aa  585  1e-166  Pseudomonas putida GB-1  Bacteria  normal  0.257074  normal 
 
 
-
 
NC_010501  PputW619_4834  acyl-CoA dehydrogenase domain-containing protein  50 
 
 
601 aa  585  1e-166  Pseudomonas putida W619  Bacteria  normal  normal  0.649579 
 
 
-
 
NC_010524  Lcho_4032  acyl-CoA dehydrogenase domain-containing protein  51.94 
 
 
596 aa  587  1e-166  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000200788 
 
 
-
 
NC_009512  Pput_0394  acyl-CoA dehydrogenase domain-containing protein  49.66 
 
 
601 aa  587  1e-166  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0571  acyl-CoA dehydrogenase domain protein  51.35 
 
 
598 aa  587  1e-166  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4089  acyl-CoA dehydrogenase domain-containing protein  51.09 
 
 
601 aa  585  1e-166  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2081  acyl-CoA dehydrogenase domain-containing protein  51.77 
 
 
586 aa  587  1e-166  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2115  acyl-CoA dehydrogenase domain-containing protein  51.86 
 
 
585 aa  588  1e-166  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000000107546  n/a   
 
 
-
 
NC_003910  CPS_1177  acyl-CoA dehydrogenase family protein  48.24 
 
 
598 aa  583  1.0000000000000001e-165  Colwellia psychrerythraea 34H  Bacteria  normal  0.158836  n/a   
 
 
-
 
NC_009720  Xaut_4445  acyl-CoA dehydrogenase domain-containing protein  52.19 
 
 
626 aa  584  1.0000000000000001e-165  Xanthobacter autotrophicus Py2  Bacteria  normal  0.744679  normal  0.0140421 
 
 
-
 
NC_004578  PSPTO_0500  acyl-CoA dehydrogenase family protein  49.83 
 
 
601 aa  582  1.0000000000000001e-165  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.837085  n/a   
 
 
-
 
NC_009439  Pmen_4081  acyl-CoA dehydrogenase domain-containing protein  48.99 
 
 
601 aa  582  1.0000000000000001e-165  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3693  acyl-CoA dehydrogenase domain-containing protein  52.69 
 
 
591 aa  583  1.0000000000000001e-165  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0380  acyl-CoA dehydrogenase domain-containing protein  52.79 
 
 
596 aa  584  1.0000000000000001e-165  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_5758  acyl-CoA dehydrogenase domain-containing protein  50.83 
 
 
595 aa  583  1.0000000000000001e-165  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0606  putative acyl-CoA dehydrogenase  50.17 
 
 
601 aa  580  1e-164  Pseudomonas aeruginosa PA7  Bacteria  normal  0.941769  n/a   
 
 
-
 
NC_008463  PA14_06600  putative acyl-CoA dehydrogenase  50.17 
 
 
601 aa  581  1e-164  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_45920  acyl-CoA dehydrogenase  51.59 
 
 
601 aa  580  1e-164  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2431  acyl-CoA dehydrogenase-like protein  51.93 
 
 
603 aa  581  1e-164  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_3797  acyl-CoA dehydrogenase domain-containing protein  51.18 
 
 
596 aa  578  1e-164  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.163707 
 
 
-
 
NC_010506  Swoo_2323  acyl-CoA dehydrogenase domain-containing protein  52.04 
 
 
585 aa  580  1e-164  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.00000258796  normal  0.0587246 
 
 
-
 
NC_008345  Sfri_2039  acyl-CoA dehydrogenase domain-containing protein  47.39 
 
 
598 aa  580  1e-164  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0419  putative acyl-CoA dehydrogenase oxidoreductase protein  51.6 
 
 
596 aa  580  1e-164  Methylibium petroleiphilum PM1  Bacteria  normal  0.232992  normal 
 
 
-
 
NC_002947  PP_2048  acyl-CoA dehydrogenase, putative  52.53 
 
 
616 aa  577  1.0000000000000001e-163  Pseudomonas putida KT2440  Bacteria  normal  0.681425  normal 
 
 
-
 
NC_009484  Acry_0007  acyl-CoA dehydrogenase domain-containing protein  50 
 
 
596 aa  577  1.0000000000000001e-163  Acidiphilium cryptum JF-5  Bacteria  normal  0.419421  n/a   
 
 
-
 
NC_010511  M446_3278  acyl-CoA dehydrogenase domain-containing protein  50.84 
 
 
597 aa  577  1.0000000000000001e-163  Methylobacterium sp. 4-46  Bacteria  normal  0.556327  normal  0.981132 
 
 
-
 
NC_008781  Pnap_3477  acyl-CoA dehydrogenase domain-containing protein  50.17 
 
 
598 aa  575  1.0000000000000001e-163  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.865632 
 
 
-
 
NC_007948  Bpro_3957  acyl-CoA dehydrogenase-like  50.08 
 
 
598 aa  576  1.0000000000000001e-163  Polaromonas sp. JS666  Bacteria  normal  0.574903  normal 
 
 
-
 
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