| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1984 |
|---|
| Symbol | |
|---|
| ID | 4476348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2361944 |
|---|
| End bp | 2363701 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639726566 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_869621 |
|---|
| Protein GI | 117920429 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000742093 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000000303591 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCTT ACCAAGCTCC GTTAGCGGAT ATGCGTTTCT TATTGGAACA GGTTTTTGAT
GCGCCAAATA CTTGGGCACA ACTCCCTGAT ATTGCTGAAA TGGTCGATAT GGATACGGCC
AGCGCGATTC TCGAAGAAGC CGCGAAAATC AGTGCTGAAT TAATCCATCC GCTTAACCGT
GCTGGCGATG AGCAAGGCGT TCTTCATCAG GATAATCGAG TGATTACCCC TGATGGTTAT
AAAGCTGTTT ACGATCAATA TTCCCAAGGC GGCTGGGTGG GCCTATGTGG TGAACCCGAG
TTCGGTGGTA TGGGCATGCC GAAAATGCTG GGGGTGTTAG TCGATGAAAT GGCTTACAGC
GCCTGCAATG CATTCACTCT GTATGGCTCA CTCACGGCGG GGGCGGCATT ATGTATTAAT
GCCCACGGCA GTGAAGAGAT TAAAGAAACC TATTTGCCGA AGCTTTACAG CGGGGAATGG
GCAGGGGCCA TGGACATGAC TGAGCCTCAG GCGGGCTCAG ATCTACGTAA TATCCGTACC
CGTGCTATCC CACAGGATGA CGGCAGTTAT GCCATTAGCG GCAGCAAAAT CTTTATCACG
GGTGGCGATC ATGATTTAAC TGAGAACGTC ATTCACTTAG TGTTGGCAAA GCTTCCTGAA
AGCAAAGGTA TTTCACTGTT CCTCGTGCCT AAAACCACGG TTAATGCCGA TGGCAGTTTA
GGCCAAGCGA ACGGTGTGAG CGTCGGTTCC ATCGAACATA AAATGGGGCT TAAGGGCTCT
GCCACTTGTG TAATGAACTT TGATGAGGCA AAAGGTTACC TGATTGGTGA GCCAAATCGT
GGTTTAGTGT GTATGTTCAC TATGATGAAC TACGAGCGCT TAGCCATCGG TATTCAAGGG
CTTGGCAGTG CGCAGGCCGC TTATCAAATG GCCGCCGATT ATGCCAAAGA GCGCAACCAA
GGCGTTGCCG CTGGCGGCTC GCCCACAGGT AGCGACTCCG ATCCTATTAT TGTTCATGGC
GACGTGCGTC GTATGCTGCT GACCATACGT GCGATGACGG AAGCGGGGCG CGCACTCTCG
GTATTTACCG GTAAACAACT CGATTTAGCA AAATATGCCG AGGGTGAGGT TAAAGCTAAG
GCTGCTCGCT ACGTGGGCTT GTTAACTCCC GTGGCAAAAG CGTTTTTAAC CGACCGCGGT
TTAGATGCTA CTATCATGGC GCAACAAGTG TTTGGTGGTC ATGGCTATAT TCGCGAAACC
GGCATTGAGC AGTTAGTACG TGATACTCGT ATTGCGCAGA TTTACGAAGG CACTAACGGC
ATTCAGGCTA TCGACTTCCT AGGACGAAAA GTTACAGGCG ATAATCTCGC GACCCTTAAG
GAGTTTGTGG CCGAGTTAAA GGCGCAAATG CGTGAGTTTA CTCAGGTCGA TGCGGTGAAA
GTGTCCGCCG TTTGTGCACG TTTGGATGCC TTAGTCAATG TTGCCGAATC CATCAATGAG
CAAAAGCTGA CTCAACCAGC GCTGATTAAC GCCAGTGCGG TCGACTTTTT GGATGCCTTC
GGCTTCACCC TCTATGGGTT CTATTGGTTA GCCATGTTGG ATAAAGCGGT GGGTGCTGAA
GATAAGCAGT ATGCCGAGCA AAAATCCTAC CTCACCAAAT TTTATTTCGA CAAATTGCTG
CCTAAGGCTG ACTATCACTT AGCACAAGTG CGCGCGGGAG ATACCAGCAC TATGGCGATG
CCAGCTGAGC TGTTCTAA
|
|---|
| Protein sequence | MNPYQAPLAD MRFLLEQVFD APNTWAQLPD IAEMVDMDTA SAILEEAAKI SAELIHPLNR
AGDEQGVLHQ DNRVITPDGY KAVYDQYSQG GWVGLCGEPE FGGMGMPKML GVLVDEMAYS
ACNAFTLYGS LTAGAALCIN AHGSEEIKET YLPKLYSGEW AGAMDMTEPQ AGSDLRNIRT
RAIPQDDGSY AISGSKIFIT GGDHDLTENV IHLVLAKLPE SKGISLFLVP KTTVNADGSL
GQANGVSVGS IEHKMGLKGS ATCVMNFDEA KGYLIGEPNR GLVCMFTMMN YERLAIGIQG
LGSAQAAYQM AADYAKERNQ GVAAGGSPTG SDSDPIIVHG DVRRMLLTIR AMTEAGRALS
VFTGKQLDLA KYAEGEVKAK AARYVGLLTP VAKAFLTDRG LDATIMAQQV FGGHGYIRET
GIEQLVRDTR IAQIYEGTNG IQAIDFLGRK VTGDNLATLK EFVAELKAQM REFTQVDAVK
VSAVCARLDA LVNVAESINE QKLTQPALIN ASAVDFLDAF GFTLYGFYWL AMLDKAVGAE
DKQYAEQKSY LTKFYFDKLL PKADYHLAQV RAGDTSTMAM PAELF
|
|---|
| |