Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4079 |
Symbol | |
ID | 5106376 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4467630 |
End bp | 4469408 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640505343 |
Product | acyl-CoA dehydrogenase domain-containing protein |
Protein accession | YP_001189558 |
Protein GI | 146309093 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 60 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGATT ACCAAGCCCC CCTGCGCGAC ATGCGCTTCG TGCTCAATGA AGTCTTCGAA GTTTCCAAGC TCTGGGCCGA GCTGCCGGCC CTGGCCGAGG TGGTCGATGC CGAGACCGCC AGCGCCATCC TCGAAGAAGC CGGCAAGGTC ACCGCTGGTA GCATCGCTCC GCTCAACCGC AGCGGCGACG AGGAAGGCTG CTCCTGGGAC AACGGCGCGG TGAAGACCCC GGCCGGTTTC CCCGAGGCCT ACCAGACCTA CGCCGAAGGC GGCTGGGTCG GTGTCGGCGG TTCGCCGGAG TTCGGCGGCA TGGGCATGCC CAAGGTGATC GGCGCCCAGG TCGAGGAAAT GGTCAACTCG GCCAACCTGT CCTTCGGCCT GTACCCGATG CTGACCGCCG GCGCCTGCCT GTCGATCCTT AACCACGCCA GCGAAGAGCT GAAGGCGCAG TACCTGCCGA ACATGTACGC CGGCGTCTGG GCCGGTTCCA TGTGCCTGAC CGAGCCGCAT GCCGGTACCG ACCTGGGCAT CATCCGCACC AAGGCCGAAC CTCAGGCCGA CGGCAGCTAC AAGATTTCCG GCACCAAGAT CTTCATCACC GGCGGCGAGC ACGACCTGAC CGAGAACATC ATCCACCTGG TGCTGGCCAA GCTGCCGGAC GCACCGGCCG GGCCGAAGGG CATCTCGCTG TTCCTGGTGC CCAAGTTCAT GGTGGGCGCC GACGGCTCGC TGGGCGAGAA GAACGCCCTG GGCTGCGGCT CCATCGAGCA CAAGATGGGC ATCAAGGCCT CGGCCACCTG CGTGATGAAC TTCGACGGCG CCACCGGCTA CCTGGTCGGC GAAGTGAACA AGGGCCTCAA TGCCATGTTC ACCATGATGA ACTACGAGCG CCTGGGCGTC GGCATCCAGG GCCTGGCCCT GGGCGAGCGC AGCTACCAGA GCGCCATCGA GTACGCCCGC GAGCGCATCC AGAGCCGCGC ACCGACCGGC CCGGTCGCCA AGGACAAGGC TGCCGACCCG ATCATCGTGC ACCCGGACGT GCGCCGCATG CTGCTGACCA TGAAGGCGCT GAACGAGGGC GGTCGCGCCT TCTCCAGCTA CGTCGCCATG CAGCTCGATA CCGCCAAGTA CAGCGAGGAC AAGGACACCG CCAAGCGTGC CGACGAACTG GTGGCGCTGC TGACCCCGGT AGCCAAGGCC TTCCTCACCG ACATGGCGCT GGAAACCACC GTGCACGGCC AGCAGATCTT CGGCGGCCAC GGCTTCATCC GCGAGTGGGG CCAGGAGCAG CTGGTGCGCG ACTGCCGCAT CACCCAGATC TACGAAGGCA CCAACGGCAT CCAGTCGCTG GACCTGATGG GGCGCAAGAT CGTCGGCAGC GGCGGCAGCT ACTACAAGCA CCTGGCCGAC GAGATCAAAG CCTTCGTCGC TTCGGCCGAT GCCAGCCTCG CCGAGTTCAC CAAGCCGCTG GCGGCTGCCG TGCAGAACCT GGATGAGCTG ACCGCCTGGG TACTGGACCG TGCCAAGAGC AACCCCAACG AGATCGGTGC GGCCTCGGTG GAATACCTGC ACGTGTTCGG CTACACCGCC TATGCCTATA TGTGGGCGCT GATGGCCAGG GCCGCGCTGG GCAAGGAAGG GCAGGACGAG TTCTACGCCA GCAAGCTGGG CACCGCACGC TTCTACTTCG CCCGTCTGCT GCCGCGCATT CACTCGCTGA GTGCGTCGGT CAAGGCGGGT AGCGAGTCGC TGTACCTGCT CGACGCCGCG CAGTTCTAA
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Protein sequence | MADYQAPLRD MRFVLNEVFE VSKLWAELPA LAEVVDAETA SAILEEAGKV TAGSIAPLNR SGDEEGCSWD NGAVKTPAGF PEAYQTYAEG GWVGVGGSPE FGGMGMPKVI GAQVEEMVNS ANLSFGLYPM LTAGACLSIL NHASEELKAQ YLPNMYAGVW AGSMCLTEPH AGTDLGIIRT KAEPQADGSY KISGTKIFIT GGEHDLTENI IHLVLAKLPD APAGPKGISL FLVPKFMVGA DGSLGEKNAL GCGSIEHKMG IKASATCVMN FDGATGYLVG EVNKGLNAMF TMMNYERLGV GIQGLALGER SYQSAIEYAR ERIQSRAPTG PVAKDKAADP IIVHPDVRRM LLTMKALNEG GRAFSSYVAM QLDTAKYSED KDTAKRADEL VALLTPVAKA FLTDMALETT VHGQQIFGGH GFIREWGQEQ LVRDCRITQI YEGTNGIQSL DLMGRKIVGS GGSYYKHLAD EIKAFVASAD ASLAEFTKPL AAAVQNLDEL TAWVLDRAKS NPNEIGAASV EYLHVFGYTA YAYMWALMAR AALGKEGQDE FYASKLGTAR FYFARLLPRI HSLSASVKAG SESLYLLDAA QF
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