Gene Pmen_4079 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4079 
Symbol 
ID5106376 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4467630 
End bp4469408 
Gene Length1779 bp 
Protein Length592 aa 
Translation table11 
GC content66% 
IMG OID640505343 
Productacyl-CoA dehydrogenase domain-containing protein 
Protein accessionYP_001189558 
Protein GI146309093 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones60 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGATT ACCAAGCCCC CCTGCGCGAC ATGCGCTTCG TGCTCAATGA AGTCTTCGAA 
GTTTCCAAGC TCTGGGCCGA GCTGCCGGCC CTGGCCGAGG TGGTCGATGC CGAGACCGCC
AGCGCCATCC TCGAAGAAGC CGGCAAGGTC ACCGCTGGTA GCATCGCTCC GCTCAACCGC
AGCGGCGACG AGGAAGGCTG CTCCTGGGAC AACGGCGCGG TGAAGACCCC GGCCGGTTTC
CCCGAGGCCT ACCAGACCTA CGCCGAAGGC GGCTGGGTCG GTGTCGGCGG TTCGCCGGAG
TTCGGCGGCA TGGGCATGCC CAAGGTGATC GGCGCCCAGG TCGAGGAAAT GGTCAACTCG
GCCAACCTGT CCTTCGGCCT GTACCCGATG CTGACCGCCG GCGCCTGCCT GTCGATCCTT
AACCACGCCA GCGAAGAGCT GAAGGCGCAG TACCTGCCGA ACATGTACGC CGGCGTCTGG
GCCGGTTCCA TGTGCCTGAC CGAGCCGCAT GCCGGTACCG ACCTGGGCAT CATCCGCACC
AAGGCCGAAC CTCAGGCCGA CGGCAGCTAC AAGATTTCCG GCACCAAGAT CTTCATCACC
GGCGGCGAGC ACGACCTGAC CGAGAACATC ATCCACCTGG TGCTGGCCAA GCTGCCGGAC
GCACCGGCCG GGCCGAAGGG CATCTCGCTG TTCCTGGTGC CCAAGTTCAT GGTGGGCGCC
GACGGCTCGC TGGGCGAGAA GAACGCCCTG GGCTGCGGCT CCATCGAGCA CAAGATGGGC
ATCAAGGCCT CGGCCACCTG CGTGATGAAC TTCGACGGCG CCACCGGCTA CCTGGTCGGC
GAAGTGAACA AGGGCCTCAA TGCCATGTTC ACCATGATGA ACTACGAGCG CCTGGGCGTC
GGCATCCAGG GCCTGGCCCT GGGCGAGCGC AGCTACCAGA GCGCCATCGA GTACGCCCGC
GAGCGCATCC AGAGCCGCGC ACCGACCGGC CCGGTCGCCA AGGACAAGGC TGCCGACCCG
ATCATCGTGC ACCCGGACGT GCGCCGCATG CTGCTGACCA TGAAGGCGCT GAACGAGGGC
GGTCGCGCCT TCTCCAGCTA CGTCGCCATG CAGCTCGATA CCGCCAAGTA CAGCGAGGAC
AAGGACACCG CCAAGCGTGC CGACGAACTG GTGGCGCTGC TGACCCCGGT AGCCAAGGCC
TTCCTCACCG ACATGGCGCT GGAAACCACC GTGCACGGCC AGCAGATCTT CGGCGGCCAC
GGCTTCATCC GCGAGTGGGG CCAGGAGCAG CTGGTGCGCG ACTGCCGCAT CACCCAGATC
TACGAAGGCA CCAACGGCAT CCAGTCGCTG GACCTGATGG GGCGCAAGAT CGTCGGCAGC
GGCGGCAGCT ACTACAAGCA CCTGGCCGAC GAGATCAAAG CCTTCGTCGC TTCGGCCGAT
GCCAGCCTCG CCGAGTTCAC CAAGCCGCTG GCGGCTGCCG TGCAGAACCT GGATGAGCTG
ACCGCCTGGG TACTGGACCG TGCCAAGAGC AACCCCAACG AGATCGGTGC GGCCTCGGTG
GAATACCTGC ACGTGTTCGG CTACACCGCC TATGCCTATA TGTGGGCGCT GATGGCCAGG
GCCGCGCTGG GCAAGGAAGG GCAGGACGAG TTCTACGCCA GCAAGCTGGG CACCGCACGC
TTCTACTTCG CCCGTCTGCT GCCGCGCATT CACTCGCTGA GTGCGTCGGT CAAGGCGGGT
AGCGAGTCGC TGTACCTGCT CGACGCCGCG CAGTTCTAA
 
Protein sequence
MADYQAPLRD MRFVLNEVFE VSKLWAELPA LAEVVDAETA SAILEEAGKV TAGSIAPLNR 
SGDEEGCSWD NGAVKTPAGF PEAYQTYAEG GWVGVGGSPE FGGMGMPKVI GAQVEEMVNS
ANLSFGLYPM LTAGACLSIL NHASEELKAQ YLPNMYAGVW AGSMCLTEPH AGTDLGIIRT
KAEPQADGSY KISGTKIFIT GGEHDLTENI IHLVLAKLPD APAGPKGISL FLVPKFMVGA
DGSLGEKNAL GCGSIEHKMG IKASATCVMN FDGATGYLVG EVNKGLNAMF TMMNYERLGV
GIQGLALGER SYQSAIEYAR ERIQSRAPTG PVAKDKAADP IIVHPDVRRM LLTMKALNEG
GRAFSSYVAM QLDTAKYSED KDTAKRADEL VALLTPVAKA FLTDMALETT VHGQQIFGGH
GFIREWGQEQ LVRDCRITQI YEGTNGIQSL DLMGRKIVGS GGSYYKHLAD EIKAFVASAD
ASLAEFTKPL AAAVQNLDEL TAWVLDRAKS NPNEIGAASV EYLHVFGYTA YAYMWALMAR
AALGKEGQDE FYASKLGTAR FYFARLLPRI HSLSASVKAG SESLYLLDAA QF