| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4081 |
|---|
| Symbol | |
|---|
| ID | 5106378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4471008 |
|---|
| End bp | 4472813 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640505345 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001189560 |
|---|
| Protein GI | 146309095 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGACT ACAAGGCCCC CTTGCGTGAC ATTCGTTTCG TTCGTGACGA GCTGCTGGGC
TATGAAGCTC ACTACCAGAG CCTGCCAGGT TGCCAGGACG CCACTCCGGA CATGGTCGAC
GCCATCCTCG AAGAAGGCGC CAAGTTCTGC GAGCAGGTTC TGTCGCCGCT GAACCGTGTG
GGTGATACCG AGGGCTGCAC CTGGAGCGAA TCCGGCGTGA AGACCCCGAC CGGCTTCAAA
GAGGCCTATC AGCAGTTCGT CGAAGGCGGC TGGCCGAGCC TGGCGCATGA CGTCGAGCAC
GGTGGCCAGG GCCTGCCGGA ATCCCTCGGC CTGGCCATCA GCGAGATGGT CGGTTCGGCC
AACTGGTCCT GGGGCATGTA CCCCGGCCTT TCCCACGGCG CCATGAACAC CCTGAGCGCT
CACGGCACCG ACGAGCAGAA GCACACCTAC CTGACCAAGC TGGTTTCCGG CGAGTGGACC
GGCACCATGT GCCTGACCGA GCCGCATTGC GGCACCGACC TGGGCATGCT GCGCACCAAG
GCCGAACCGC AGGCCGACGG CAGCTACAAG GTCACCGGTA CCAAGATCTT CATTTCCGCT
GGTGAGCACG ACATGGCCGA CAACATCGTC CATATCGTTC TGGCCCGCCT GCCCGATGCT
CCGGCCGGTA CCAAAGGTAT CTCGCTGTTC ATCGTGCCGA AGTTCCTGCC CAACGCCGAA
GGCGGCGTAG GCGAGCGCAA CGCCGTTTCC TGTGGCTCCA TCGAGCACAA GATGGGCATC
CACGGCAACG CCACCTGCGT GATGAACTTC GACGGTGCCA CCGGCTTCCT GATCGGCCCG
GCCAACAAGG GCCTGAACTG CATGTTCACC TTCATGAACA CCGCTCGTCT GGGGACCGCG
CTGCAAGGCC TGGCCCACGC CGAAGTCGGT TTCCAGGGTG GCATCAAGTA CGCCCGCGAG
CGTCTGCAGA TGCGTTCGCT GACCGGCCCG AAGGCGCCGG AAAAAGCCGC TGACCCGATC
ATCGTGCATC CGGACGTGCG CCGCATGCTG CTGACCATGA AGGCCTTCGC CGAAGGCAAC
CGCGCCATGG TCTACTTCAC CGCCAAGCAG GTGGACATCG TCAAGTACAG CCAGAACGAA
GAAGAGAAGA AGGCCGCCGA CGAGCTGCTG GCCTTCCTGA CTCCGATCGC CAAGGCATTC
ATGACCGAAG TGGGCTTCGA AGCCGCTTCC CACGGCATGC AGATCTACGG TGGCCACGGC
TTCATCAGCG AGTGGGGCAT GGAGCAGAAC CTGCGCGACT GCCGCATCTC CATGATGTAC
GAAGGCACCA CCGGCGTTCA GGCGCTGGAC CTGCTGGGCC GCAAGGTGCT GATGACTCAG
GGCGGCGCCC TGAAGAACTT CACCAAGATC GTGCACAAGT TCTGCCAGGC CAACGAAGGC
AACGACTCCG TCAAGGAGTT CATCGAGCCG CTGGCCAAGC TGAACAAGGA GTGGGGCGAC
GTCACCATGA AGATCGGCAT GGCTGCGATG AAGGATCGCG AAGAAGTCGG TGCCGCCTCC
GTGGACTACC TGATGTACTC CGGTTACGCC TGCCTGGCCT ACTTCTGGGC CGACATGGCG
CGCCTGGCCG CCGAGAAGCT GGCTGCCGGC ACTGGCGACG AGGCCTTCTA CAAGGCCAAG
CTGCAGACCG CGCGCTTCTA CTTCGCACGT ATCCTGCCGC GCACCCGCGC GCACGTCGAA
GCCATGCTGT CGGGCGCCAA CAACCTGATG GAAATGGACG AAGAGCACTT CGCGCTCGGC
TTCTAA
|
|---|
| Protein sequence | MPDYKAPLRD IRFVRDELLG YEAHYQSLPG CQDATPDMVD AILEEGAKFC EQVLSPLNRV
GDTEGCTWSE SGVKTPTGFK EAYQQFVEGG WPSLAHDVEH GGQGLPESLG LAISEMVGSA
NWSWGMYPGL SHGAMNTLSA HGTDEQKHTY LTKLVSGEWT GTMCLTEPHC GTDLGMLRTK
AEPQADGSYK VTGTKIFISA GEHDMADNIV HIVLARLPDA PAGTKGISLF IVPKFLPNAE
GGVGERNAVS CGSIEHKMGI HGNATCVMNF DGATGFLIGP ANKGLNCMFT FMNTARLGTA
LQGLAHAEVG FQGGIKYARE RLQMRSLTGP KAPEKAADPI IVHPDVRRML LTMKAFAEGN
RAMVYFTAKQ VDIVKYSQNE EEKKAADELL AFLTPIAKAF MTEVGFEAAS HGMQIYGGHG
FISEWGMEQN LRDCRISMMY EGTTGVQALD LLGRKVLMTQ GGALKNFTKI VHKFCQANEG
NDSVKEFIEP LAKLNKEWGD VTMKIGMAAM KDREEVGAAS VDYLMYSGYA CLAYFWADMA
RLAAEKLAAG TGDEAFYKAK LQTARFYFAR ILPRTRAHVE AMLSGANNLM EMDEEHFALG
F
|
|---|
| |