More than 300 homologs were found in PanDaTox collection
for query gene Pmen_0380 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0368  acyl-CoA dehydrogenase domain-containing protein  55.03 
 
 
601 aa  667    Pseudomonas putida KT2440  Bacteria  normal  0.335716  normal 
 
 
-
 
NC_002947  PP_2048  acyl-CoA dehydrogenase, putative  75 
 
 
616 aa  894    Pseudomonas putida KT2440  Bacteria  normal  0.681425  normal 
 
 
-
 
NC_009656  PSPA7_5930  putative acyl-CoA dehydrogenase  79.36 
 
 
596 aa  927    Pseudomonas aeruginosa PA7  Bacteria  normal  0.505334  n/a   
 
 
-
 
NC_003910  CPS_1177  acyl-CoA dehydrogenase family protein  50.76 
 
 
598 aa  652    Colwellia psychrerythraea 34H  Bacteria  normal  0.158836  n/a   
 
 
-
 
NC_010501  PputW619_3148  acyl-CoA dehydrogenase domain-containing protein  74.37 
 
 
595 aa  867    Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0500  acyl-CoA dehydrogenase family protein  53.03 
 
 
601 aa  647    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.837085  n/a   
 
 
-
 
NC_008463  PA14_06600  putative acyl-CoA dehydrogenase  53.36 
 
 
601 aa  645    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4681  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  53.03 
 
 
601 aa  649    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_45920  acyl-CoA dehydrogenase  54.88 
 
 
601 aa  647    Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0394  acyl-CoA dehydrogenase domain-containing protein  55.03 
 
 
601 aa  667    Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4834  acyl-CoA dehydrogenase domain-containing protein  54.04 
 
 
601 aa  655    Pseudomonas putida W619  Bacteria  normal  normal  0.649579 
 
 
-
 
NC_007492  Pfl01_5167  Acyl-CoA dehydrogenase-like  53.11 
 
 
598 aa  659    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0783661 
 
 
-
 
NC_007492  Pfl01_5170  Acyl-CoA dehydrogenase-like  53.86 
 
 
601 aa  654    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.131109  normal  0.317042 
 
 
-
 
NC_008463  PA14_06620  putative acyl-CoA dehydrogenase  55.8 
 
 
598 aa  676    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4081  acyl-CoA dehydrogenase domain-containing protein  53.86 
 
 
601 aa  663    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0380  acyl-CoA dehydrogenase domain-containing protein  100 
 
 
596 aa  1215    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01742  probable acyl-CoA dehydrogenase  54.53 
 
 
586 aa  642    Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.773956  n/a   
 
 
-
 
NC_009656  PSPA7_0606  putative acyl-CoA dehydrogenase  53.52 
 
 
601 aa  647    Pseudomonas aeruginosa PA7  Bacteria  normal  0.941769  n/a   
 
 
-
 
NC_009656  PSPA7_0607  putative acyl-CoA dehydrogenase  55.63 
 
 
598 aa  677    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3693  acyl-CoA dehydrogenase domain-containing protein  75 
 
 
591 aa  895    Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0398  acyl-CoA dehydrogenase domain-containing protein  54.87 
 
 
601 aa  665    Pseudomonas putida GB-1  Bacteria  normal  0.257074  normal 
 
 
-
 
NC_008463  PA14_68510  putative acyl-CoA dehydrogenase  79.03 
 
 
596 aa  920    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.0032913  normal  0.251007 
 
 
-
 
NC_009654  Mmwyl1_1571  acyl-CoA dehydrogenase domain-containing protein  51.85 
 
 
601 aa  637    Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  0.0000982993 
 
 
-
 
NC_008345  Sfri_2039  acyl-CoA dehydrogenase domain-containing protein  50.92 
 
 
598 aa  654    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_06640  putative acyl-CoA dehydrogenase  53.78 
 
 
592 aa  631  1e-180  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0609  putative acyl-CoA dehydrogenase  53.95 
 
 
592 aa  633  1e-180  Pseudomonas aeruginosa PA7  Bacteria  normal  0.666513  n/a   
 
 
-
 
NC_011138  MADE_02316  Acyl-CoA dehydrogenase  49.92 
 
 
599 aa  630  1e-179  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.254784  n/a   
 
 
-
 
NC_009439  Pmen_4079  acyl-CoA dehydrogenase domain-containing protein  52.77 
 
 
592 aa  629  1e-179  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2431  acyl-CoA dehydrogenase-like protein  53.28 
 
 
603 aa  625  1e-178  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2750  acyl-CoA dehydrogenase domain-containing protein  49.83 
 
 
599 aa  624  1e-177  Marinobacter aquaeolei VT8  Bacteria  unclonable  0.000084613  n/a   
 
 
-
 
NC_009524  PsycPRwf_0912  acyl-CoA dehydrogenase domain-containing protein  49.5 
 
 
597 aa  621  1e-177  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_1918  acyl-CoA dehydrogenase-like  49.58 
 
 
600 aa  622  1e-177  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.477774  n/a   
 
 
-
 
NC_008542  Bcen2424_2721  acyl-CoA dehydrogenase domain-containing protein  51.85 
 
 
595 aa  620  1e-176  Burkholderia cenocepacia HI2424  Bacteria  normal  0.440911  n/a   
 
 
-
 
NC_008463  PA14_09630  putative acyl-CoA dehydrogenase  52.77 
 
 
593 aa  621  1e-176  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.806665  normal 
 
 
-
 
NC_010508  Bcenmc03_2748  acyl-CoA dehydrogenase domain-containing protein  51.85 
 
 
595 aa  620  1e-176  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.139086  normal 
 
 
-
 
NC_012560  Avin_25210  acyl-CoA dehydrogenase  53.86 
 
 
591 aa  620  1e-176  Azotobacter vinelandii DJ  Bacteria  normal  0.885326  n/a   
 
 
-
 
NC_008060  Bcen_2109  acyl-CoA dehydrogenase-like  51.85 
 
 
595 aa  620  1e-176  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_0965  putative acyl-CoA dehydrogenase  49.5 
 
 
597 aa  617  1e-175  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.314138 
 
 
-
 
NC_009656  PSPA7_0899  putative acyl-CoA dehydrogenase  52.77 
 
 
593 aa  615  1e-175  Pseudomonas aeruginosa PA7  Bacteria  normal  0.183433  n/a   
 
 
-
 
NC_007969  Pcryo_1452  acyl-CoA dehydrogenase-like  49.67 
 
 
597 aa  617  1e-175  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2639  acyl-CoA dehydrogenase domain-containing protein  52.34 
 
 
595 aa  617  1e-175  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0601004  normal  0.257028 
 
 
-
 
NC_006348  BMA0197  acyl-CoA dehydrogenase domain-containing protein  51.51 
 
 
595 aa  612  9.999999999999999e-175  Burkholderia mallei ATCC 23344  Bacteria  normal  0.908056  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2748  acyl-CoA dehydrogenase domain-containing protein  51.51 
 
 
595 aa  612  9.999999999999999e-175  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2410  acyl-CoA dehydrogenase domain-containing protein  51.51 
 
 
595 aa  612  9.999999999999999e-175  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0578  acyl-CoA dehydrogenase domain-containing protein  51.85 
 
 
595 aa  615  9.999999999999999e-175  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4832  acyl-CoA dehydrogenase domain-containing protein  51.76 
 
 
592 aa  611  9.999999999999999e-175  Pseudomonas putida W619  Bacteria  normal  normal  0.946881 
 
 
-
 
NC_008836  BMA10229_A2330  acyl-CoA dehydrogenase domain-containing protein  51.51 
 
 
595 aa  612  9.999999999999999e-175  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0473  putative acyl-CoA dehydrogenase oxidoreductase protein  51.01 
 
 
595 aa  609  1e-173  Ralstonia solanacearum GMI1000  Bacteria  normal  0.390432  normal 
 
 
-
 
NC_010322  PputGB1_0400  acyl-CoA dehydrogenase domain-containing protein  52.01 
 
 
592 aa  608  1e-173  Pseudomonas putida GB-1  Bacteria  normal  normal  0.672876 
 
 
-
 
NC_009484  Acry_0007  acyl-CoA dehydrogenase domain-containing protein  51.43 
 
 
596 aa  609  1e-173  Acidiphilium cryptum JF-5  Bacteria  normal  0.419421  n/a   
 
 
-
 
NC_009076  BURPS1106A_0695  acyl-CoA dehydrogenase domain-containing protein  51.17 
 
 
595 aa  609  1e-173  Burkholderia pseudomallei 1106a  Bacteria  normal  0.832914  n/a   
 
 
-
 
NC_007434  BURPS1710b_0857  acyl-CoA dehydrogenase domain-containing protein  51.17 
 
 
595 aa  609  1e-173  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0396  acyl-CoA dehydrogenase domain-containing protein  52.1 
 
 
592 aa  611  1e-173  Pseudomonas putida F1  Bacteria  normal  0.352257  normal 
 
 
-
 
NC_007510  Bcep18194_A6048  Acyl-CoA dehydrogenase-like  50.67 
 
 
599 aa  610  1e-173  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0564  acyl-CoA dehydrogenase domain-containing protein  51.17 
 
 
595 aa  610  1e-173  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0680  acyl-CoA dehydrogenase domain-containing protein  51.17 
 
 
595 aa  609  1e-173  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3819  acyl-CoA dehydrogenase domain-containing protein  53.1 
 
 
590 aa  608  1e-173  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0385  acyl-CoA dehydrogenase-like protein  51.17 
 
 
595 aa  609  1e-173  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.13259 
 
 
-
 
NC_002947  PP_0370  acyl-CoA dehydrogenase domain-containing protein  51.93 
 
 
592 aa  608  9.999999999999999e-173  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3554  acyl-CoA dehydrogenase domain-containing protein  52.93 
 
 
589 aa  605  9.999999999999999e-173  Pseudomonas putida KT2440  Bacteria  normal  0.244117  normal 
 
 
-
 
NC_010622  Bphy_0385  acyl-CoA dehydrogenase domain-containing protein  50.67 
 
 
595 aa  606  9.999999999999999e-173  Burkholderia phymatum STM815  Bacteria  normal  0.840786  normal  0.461604 
 
 
-
 
NC_011666  Msil_1741  acyl-CoA dehydrogenase domain protein  52.1 
 
 
594 aa  605  9.999999999999999e-173  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010322  PputGB1_2368  acyl-CoA dehydrogenase domain-containing protein  53.6 
 
 
589 aa  606  9.999999999999999e-173  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0446  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  50.59 
 
 
595 aa  602  1.0000000000000001e-171  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5166  Acyl-CoA dehydrogenase-like  51.58 
 
 
592 aa  605  1.0000000000000001e-171  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.164353 
 
 
-
 
NC_010682  Rpic_0348  acyl-CoA dehydrogenase domain protein  51.26 
 
 
595 aa  604  1.0000000000000001e-171  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4038  putative acyl-CoA dehydrogenase oxidoreductase  50.67 
 
 
595 aa  603  1.0000000000000001e-171  Burkholderia xenovorans LB400  Bacteria  normal  0.922091  normal  0.0585748 
 
 
-
 
NC_010581  Bind_1754  acyl-CoA dehydrogenase domain-containing protein  50.67 
 
 
594 aa  602  1.0000000000000001e-171  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.0420795 
 
 
-
 
NC_009512  Pput_2220  acyl-CoA dehydrogenase domain-containing protein  52.76 
 
 
594 aa  602  1.0000000000000001e-171  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0363  acyl-CoA dehydrogenase domain protein  50.75 
 
 
595 aa  600  1e-170  Ralstonia pickettii 12D  Bacteria  normal  0.84094  normal 
 
 
-
 
NC_007005  Psyr_4677  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  50.25 
 
 
592 aa  600  1e-170  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0983724  normal 
 
 
-
 
NC_010322  PputGB1_2808  acyl-CoA dehydrogenase domain-containing protein  52.79 
 
 
592 aa  600  1e-170  Pseudomonas putida GB-1  Bacteria  normal  0.566358  normal 
 
 
-
 
NC_008740  Maqu_2749  acyl-CoA dehydrogenase domain-containing protein  49.58 
 
 
596 aa  600  1e-170  Marinobacter aquaeolei VT8  Bacteria  normal  0.59666  n/a   
 
 
-
 
NC_009512  Pput_2665  acyl-CoA dehydrogenase domain-containing protein  51.44 
 
 
592 aa  595  1e-169  Pseudomonas putida F1  Bacteria  normal  0.755851  normal 
 
 
-
 
NC_004578  PSPTO_0506  acyl-CoA dehydrogenase family protein  50.08 
 
 
592 aa  597  1e-169  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0661  acyl-CoA dehydrogenase domain protein  50 
 
 
595 aa  597  1e-169  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3101  acyl-CoA dehydrogenase domain-containing protein  51.67 
 
 
592 aa  593  1e-168  Pseudomonas mendocina ymp  Bacteria  normal  0.165418  normal 
 
 
-
 
NC_007912  Sde_1885  putative acyl-CoA dehydrogenase  48.99 
 
 
595 aa  592  1e-168  Saccharophagus degradans 2-40  Bacteria  normal  0.137162  normal 
 
 
-
 
NC_003910  CPS_2263  acyl-CoA dehydrogenase family protein  45.53 
 
 
606 aa  590  1e-167  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2777  acyl-CoA dehydrogenase domain protein  52.01 
 
 
596 aa  590  1e-167  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.932954  normal 
 
 
-
 
NC_008740  Maqu_3891  acyl-CoA dehydrogenase domain-containing protein  49.42 
 
 
606 aa  590  1e-167  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_3797  acyl-CoA dehydrogenase domain-containing protein  49.33 
 
 
596 aa  582  1.0000000000000001e-165  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.163707 
 
 
-
 
NC_007643  Rru_A1308  Acyl-CoA dehydrogenase  50.08 
 
 
596 aa  582  1.0000000000000001e-165  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.135322  n/a   
 
 
-
 
NC_008228  Patl_1408  acyl-CoA dehydrogenase-like  45.36 
 
 
606 aa  582  1.0000000000000001e-165  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_01173  acyl-CoA dehydrogenase  50 
 
 
597 aa  580  1e-164  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.520854  n/a   
 
 
-
 
NC_007969  Pcryo_0148  acyl-CoA dehydrogenase-like  46.77 
 
 
606 aa  576  1.0000000000000001e-163  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4476  acyl-CoA dehydrogenase family protein  47.75 
 
 
602 aa  573  1.0000000000000001e-162  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1337  acyl-CoA dehydrogenase domain-containing protein  49.16 
 
 
601 aa  574  1.0000000000000001e-162  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_0137  acyl-CoA dehydrogenase  46.6 
 
 
606 aa  571  1e-161  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.112262 
 
 
-
 
NC_010524  Lcho_4032  acyl-CoA dehydrogenase domain-containing protein  49.42 
 
 
596 aa  568  1e-161  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000200788 
 
 
-
 
NC_009720  Xaut_4445  acyl-CoA dehydrogenase domain-containing protein  50.08 
 
 
626 aa  569  1e-161  Xanthobacter autotrophicus Py2  Bacteria  normal  0.744679  normal  0.0140421 
 
 
-
 
NC_009524  PsycPRwf_0116  acyl-CoA dehydrogenase domain-containing protein  46.93 
 
 
606 aa  570  1e-161  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_2696  acyl-CoA dehydrogenase domain-containing protein  48.82 
 
 
596 aa  567  1e-160  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1852  acyl-CoA dehydrogenase domain-containing protein  49.92 
 
 
596 aa  567  1e-160  Shewanella pealeana ATCC 700345  Bacteria  normal  0.265206  n/a   
 
 
-
 
NC_007948  Bpro_3957  acyl-CoA dehydrogenase-like  48.23 
 
 
598 aa  566  1e-160  Polaromonas sp. JS666  Bacteria  normal  0.574903  normal 
 
 
-
 
NC_010531  Pnec_0962  acyl-CoA dehydrogenase domain protein  47.9 
 
 
595 aa  566  1e-160  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0419  putative acyl-CoA dehydrogenase oxidoreductase protein  47.74 
 
 
596 aa  559  1e-158  Methylibium petroleiphilum PM1  Bacteria  normal  0.232992  normal 
 
 
-
 
NC_011992  Dtpsy_0571  acyl-CoA dehydrogenase domain protein  47.89 
 
 
598 aa  560  1e-158  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0515  acyl-CoA dehydrogenase domain-containing protein  47.75 
 
 
591 aa  557  1e-157  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3519  acyl-CoA dehydrogenase-like  46.71 
 
 
598 aa  558  1e-157  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
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