Gene Sfri_2039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2039 
Symbol 
ID4278951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2414717 
End bp2416513 
Gene Length1797 bp 
Protein Length598 aa 
Translation table11 
GC content44% 
IMG OID638134828 
Productacyl-CoA dehydrogenase domain-containing protein 
Protein accessionYP_750723 
Protein GI114563210 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTGAAT ATAAAGCCCC CATTCGTGAC GTAAAATTTG TTATGCAAGA GCTGCTAGAT 
TGTGAAGGGC ACTATCAGCG TTTGGGTTAC CAAGATGCCA GTATCGACAT GGTTGATGCC
ATTATTGCTG AAGCGGCAAA ATTAACTGAA CAAGTTGTTG CACCATTAAA TCAAATTGGC
GATCAACAAG GTTGTACCTG GAAAGACGGC GTTGTAACCA CACCAGACGG ATTTAAAGAG
GCGTACGCAC AATATGTAGA AGGCGGCTGG CCAACGTTAT CTCAGTCTGA AGAGTTTGGT
GGCCAAGGTT TACCTCATTC ATTAAATATC AGTATTGCTG AGTTGTTTTC CAGCGCGAAC
CACAGCTTTG CTATGTACCC AGGCCTTAGC CATGGCGCAT TAGCCACAAT TGAAGCCCAC
GGTACAGAGG CTCAAAAACA GCAGTTTATG CCAAGCCTAG TAGAAGGTAA GTGGACTGGC
ACAATGTGTT TAACAGAGCC ACATTGTGGT ACTGACTTAG GCATGTTGCG CACCAAAGCT
GAACTGCAAG CTGACGGCAC TTATTCATTG AGTGGCACTA AAATCTTTAT CTCAGCAGGC
GAGCATGATC TGTCTGACAA CATTGTGCAT ATTGTTATTG CCCGTATTCC TGGTGCGCCA
GAAGGCAACA AAGGTATCTC GCTATTTATC GTACCTAAGT TCAACGTTAA TGAAGATGGC
ACAATTTCAG ATAGAAACGG CGTGAGTTGT GGTTCTATTG AACATAAAAT GGGCATTAAT
GGTAACGCTA CCTGTGTGAT TAATTTTGAT GGTGCAACTG GGCATTTGAT TGGTGAACCT
AATCGCGGCC TTAAGTGCAT GTTTACCTTT ATGAATGCTG CACGTATTGG TGTGGCAAGT
GAAGGTGTTG CGGCTGCTGA AGCATCATTC CAGGGGGCAT TAGCCTACGC AAAAGATCGC
CTACAAATGC GTTCAATTAG CGGTGTTAAA AACCCTAATG GCCCAGCAGA CCCAATCATT
GTTCATCCAG ATGTGCGTAG AATGCTATTG ACCCAAAAGT CGATTGCTGA AGGCGGCCGA
GCGTTAATTT CGTATCTTGC CCAGCTAGTT GATATTGGCC ATGCCGAAAA AGACGAAGCC
ATTAAAGCTG ATGCTGAAAC TAAGTTAGCC TTGTTAACAC CTATTGCTAA AGCATTTTTA
TCCGAGCTTG GTTTTGAATG TACCAGCCAC GGCGTGCAAA TATTCGGTGG CCACGGCTTT
ATTAAAGAGT GGGGCATGGA ACAGTTAATG CGCGACACCA AGATTAGCTG CTTATATGAA
GGCACTACTG GTATTCAGGC ATTAGACTTA CTGGCTCGTA AAATTATTGG TACTCAGGGT
GAAGTATTAA AGCCTTTCTC TAAAGACGTT ACCGTATTCT GCCAACAAAA CATGGACAAC
CCAGCCATGG CTGAGTTTAT TAAACCGATT ATGTCTTATG CCAAAGAGTG GCATGAACTG
ACCGTGTTAA TTGGCGGCAA AGCGATGAAG AACCCGGATG AAATCGGCGG TGCATCTGTT
GATTACTTAA TGTATGCCGG TTATGTGACA CTTGCTTTCT TCTGGGCAAA AATGGCTAAA
GTGGCACAAG ACAAATTGGC TGCAGGCACC ACTGAAACTG CGTTTTATGA AGCTAAAATC
AAAACCGCTC AATTCTTTAT GCAGCGTATG TTACCAAGAG CCAAAGGCCA TGCGGCATGT
ATTGCCAATG GTGTTGATTC AATGATGGCA CTAGATAGCG AAGACTTTGC TTTTTAA
 
Protein sequence
MPEYKAPIRD VKFVMQELLD CEGHYQRLGY QDASIDMVDA IIAEAAKLTE QVVAPLNQIG 
DQQGCTWKDG VVTTPDGFKE AYAQYVEGGW PTLSQSEEFG GQGLPHSLNI SIAELFSSAN
HSFAMYPGLS HGALATIEAH GTEAQKQQFM PSLVEGKWTG TMCLTEPHCG TDLGMLRTKA
ELQADGTYSL SGTKIFISAG EHDLSDNIVH IVIARIPGAP EGNKGISLFI VPKFNVNEDG
TISDRNGVSC GSIEHKMGIN GNATCVINFD GATGHLIGEP NRGLKCMFTF MNAARIGVAS
EGVAAAEASF QGALAYAKDR LQMRSISGVK NPNGPADPII VHPDVRRMLL TQKSIAEGGR
ALISYLAQLV DIGHAEKDEA IKADAETKLA LLTPIAKAFL SELGFECTSH GVQIFGGHGF
IKEWGMEQLM RDTKISCLYE GTTGIQALDL LARKIIGTQG EVLKPFSKDV TVFCQQNMDN
PAMAEFIKPI MSYAKEWHEL TVLIGGKAMK NPDEIGGASV DYLMYAGYVT LAFFWAKMAK
VAQDKLAAGT TETAFYEAKI KTAQFFMQRM LPRAKGHAAC IANGVDSMMA LDSEDFAF