| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2323 |
|---|
| Symbol | |
|---|
| ID | 6116594 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2854545 |
|---|
| End bp | 2856302 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641633829 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001760697 |
|---|
| Protein GI | 170726671 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000258796 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0587246 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCTT ACCAAGCTCC GCTAGCTGAA ATGAAATTCC TATTAGAGAA GGTTTTTGAC
GCCCCTCAAA CATGGGCGTC ACTACCTGAA ATCGCTGAAA ATGTCGATCT GGATACAGCT
GTTGCGATCA TGGATGAAGC AGACAAAATA AGTCGTGAGC TTATTCATCC TATTAACCGT
AGCGGTGATG AGCAAGGGGT TACACATCAA GATGCTAAGG TGATCACACC GGATGGCTTT
AAAGAGGTCT ATAGCCAGTA TGCTGAAGGC GGCTGGGTTG GCTTCTGTGG TGATCCTGAG
TTTGGCGGCA TGGGAATGCC TAAGATGCTG GGGGTTTTAG TTGATGAGAT GGCCTATAGC
GCCTGTAACT CTTTTACCCT CTATGGCTCA TTAACTGCTG GGGCTGCATT ATGCATCAAT
GCCCACGGAA GTGATGCGTT AAAAGAGAAA TACTTGCCTA TGATGTACAG CGGTGAGTGG
GCTGGGGCTA TGGATATGAC TGAGCCTCAA GCGGGCTCAG ATCTTCGTAA TATCCGCACT
AAGGCAACGC CAAATGATGA TGGTAGCTAT AGCATTACAG GCAGCAAAAT TTTCATTACT
GGTGGCGATC ATGATCTCAC TGAGAACGTT ATCCACCTTG TTTTAGCAAA ACTTCCCGAT
ACTAGTGGGA TCTCACTCTT CCTAGTGCCT AAGATTAAAG TTGATGATGA GGGCAATCTA
GGTGAAGCCA ACGGCGTAAC AGTTGGTTCA ATTGAGCACA AGATGGGACT TAAGGCTTCT
GCAACTTGTG TCATGAACTA TGATGGTGCC CAAGGTTACC TAATTGGTAA GCCTAACCGC
GGACTGGTTT GTATGTTTAC CATGATGAAC TACGAACGTC TGGCTATCGG TATTCAAGGG
TTAGGAACGT CGCAAGCAGC GTATCAGATG GCCTCTGACT ACGCCAAAGA GCGTGTTCAA
GGAGTGGCGG CTGGTGGCTC ACCAACAGGA GCGACTAGTG ATCCTATCTT GGTTCATGGT
GATGTACGTC GTATGCTACT AAATATTCGC GTATTAACCG AAGCGGGGCG TGCTCTGTCT
GTATTGACTG GCCAGCAACT TGATATTGCT AAGTATGGTG ACGGAGAAGC GCAGGCTAAA
GCAAATCGTT ACGTTGGTTT ACTGACGCCT GTGTCAAAAG CTTTCTTAAG TGATCGTGGC
TTAGATGCAG CCGTTACAGC GCAGCAAGTT TTTGGTGGTC ATGGTTATAT CCGTGAGACC
GGCATAGAGC AACTGGTACG AGACACTCGT ATTGCACAGA TTTATGAAGG TACAAACGGT
ATTCAGGCTA TCGATTTCCT TGGACGTAAA GTCACCGGAG ATAACCTAGC CGCGTTAACT
GAGTTTGTGG CTGAGTGCAG TGAAAAGCTC GCTTCGTTAT CCCAAGTTGA TGAAAACCAA
AAGGCCAAGG TACAAGCCCT ATTTGATGAA CTCATTGAGG TGGCTCAACT GGTAAACGAT
AAAAAACTAT CTAACCCTGC AATTATCAAT GCTTGCGCAG TGGATTTCCT CGATGCATTT
GGTCATGTGG TTTATGGTTA TTTCTGGCTC TTGATGTCAG ATGCTGCGTC GGCTGACGTT
GACAGTGATT TTGCATCACA AAAGCGTTAT CTAAGCGATT TCTATATTAC TAAGATGCTA
CCTAGAGCTA AATACCATTT AACTCAGGTG CGTGAAGGCG AGAGTGCCAT CATGGATATT
CCAGAAGCAT TTTTTTAA
|
|---|
| Protein sequence | MNPYQAPLAE MKFLLEKVFD APQTWASLPE IAENVDLDTA VAIMDEADKI SRELIHPINR
SGDEQGVTHQ DAKVITPDGF KEVYSQYAEG GWVGFCGDPE FGGMGMPKML GVLVDEMAYS
ACNSFTLYGS LTAGAALCIN AHGSDALKEK YLPMMYSGEW AGAMDMTEPQ AGSDLRNIRT
KATPNDDGSY SITGSKIFIT GGDHDLTENV IHLVLAKLPD TSGISLFLVP KIKVDDEGNL
GEANGVTVGS IEHKMGLKAS ATCVMNYDGA QGYLIGKPNR GLVCMFTMMN YERLAIGIQG
LGTSQAAYQM ASDYAKERVQ GVAAGGSPTG ATSDPILVHG DVRRMLLNIR VLTEAGRALS
VLTGQQLDIA KYGDGEAQAK ANRYVGLLTP VSKAFLSDRG LDAAVTAQQV FGGHGYIRET
GIEQLVRDTR IAQIYEGTNG IQAIDFLGRK VTGDNLAALT EFVAECSEKL ASLSQVDENQ
KAKVQALFDE LIEVAQLVND KKLSNPAIIN ACAVDFLDAF GHVVYGYFWL LMSDAASADV
DSDFASQKRY LSDFYITKML PRAKYHLTQV REGESAIMDI PEAFF
|
|---|
| |