More than 300 homologs were found in PanDaTox collection
for query gene Plim_0428 on replicon NC_014148
Organism: Planctomyces limnophilus DSM 3776



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_014148  Plim_0428  response regulator receiver  100 
 
 		 140 aa  291  3e-78  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.131819  n/a   
 
 
-
 
NC_009486  Tpet_0452  response regulator receiver protein  37.7 
 
 		 122 aa  86.3  1e-16  Thermotoga petrophila RKU-1  Bacteria  normal  0.17051  n/a   
 
 
-
 
NC_010483  TRQ2_0467  response regulator receiver protein  36.89 
 
 		 122 aa  85.1  3e-16  Thermotoga sp. RQ2  Bacteria  normal  1  n/a   
 
 
-
 
NC_013223  Dret_0467  two component transcriptional regulator, winged helix family  40.65 
 
 		 230 aa  84.7  4e-16  Desulfohalobium retbaense DSM 5692  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009720  Xaut_2427  response regulator receiver protein  39.29 
 
 		 159 aa  83.2  0.000000000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  0.468058 
 
 
-
 
NC_007298  Daro_1632  response regulator receiver  36.07 
 
 		 123 aa  81.6  0.000000000000003  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008789  Hhal_1901  response regulator receiver protein  34.13 
 
 		 125 aa  81.6  0.000000000000003  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008044  TM1040_1509  response regulator receiver protein  36.89 
 
 		 137 aa  82  0.000000000000003  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_0237  response regulator receiver protein  34.78 
 
 		 124 aa  80.9  0.000000000000005  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000555979 
 
 
-
 
NC_008228  Patl_1053  two component transcriptional regulator  35.61 
 
 		 229 aa  80.9  0.000000000000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_011891  A2cp1_4151  two component transcriptional regulator, winged helix family  41.82 
 
 		 230 aa  80.5  0.000000000000008  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  41.82 
 
 		 230 aa  80.5  0.000000000000008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_011884  Cyan7425_4627  two component transcriptional regulator, LuxR family  31.69 
 
 		 226 aa  80.5  0.000000000000008  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009092  Shew_2749  two component transcriptional regulator  39.47 
 
 		 241 aa  80.5  0.000000000000008  Shewanella loihica PV-4  Bacteria  decreased coverage  0.00000593879  unclonable  0.00000330773 
 
 
-
 
NC_011901  Tgr7_2472  response regulator receiver protein  36.43 
 
 		 216 aa  80.1  0.000000000000009  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_4125  two component transcriptional regulator, winged helix family  41.82 
 
 		 230 aa  80.1  0.000000000000009  Anaeromyxobacter sp. K  Bacteria  normal  0.125271  n/a   
 
 
-
 
NC_009484  Acry_2951  two component transcriptional regulator  37.19 
 
 		 236 aa  79.7  0.00000000000001  Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
-
 
NC_007908  Rfer_3778  response regulator receiver domain-containing protein  32.79 
 
 		 124 aa  79.7  0.00000000000001  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_007948  Bpro_4150  response regulator receiver protein  33.61 
 
 		 125 aa  80.1  0.00000000000001  Polaromonas sp. JS666  Bacteria  normal  1  normal  0.583085 
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  34.17 
 
 		 231 aa  79.3  0.00000000000001  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_007413  Ava_0301  two component LuxR family transcriptional regulator  35.96 
 
 		 231 aa  79.3  0.00000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.54347  normal  1 
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  33.33 
 
 		 235 aa  78.6  0.00000000000003  Synechococcus elongatus PCC 7942  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008688  Pden_5113  response regulator receiver protein  35.96 
 
 		 121 aa  78.2  0.00000000000003  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_2142  chemotaxis protein cheY  33.33 
 
 		 121 aa  78.6  0.00000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007802  Jann_2695  response regulator receiver domain-containing protein  36.29 
 
 		 186 aa  77.8  0.00000000000004  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.00269866  normal  0.78823 
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  34.17 
 
 		 231 aa  77.8  0.00000000000004  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_009379  Pnuc_1597  two component transcriptional regulator  35.96 
 
 		 237 aa  77.8  0.00000000000004  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011729  PCC7424_4695  putative CheA signal transduction histidine kinase  35.9 
 
 		 1127 aa  77.4  0.00000000000005  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_010730  SYO3AOP1_0329  two component transcriptional regulator, winged helix family  35.9 
 
 		 231 aa  77.8  0.00000000000005  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_03440  putative DNA-binding response regulator PhoB  36.15 
 
 		 229 aa  77.8  0.00000000000005  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_0669  response regulator receiver protein  33.61 
 
 		 123 aa  77.8  0.00000000000005  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009091  P9301_01891  two-component response regulator  36.13 
 
 		 242 aa  77.4  0.00000000000006  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.991625  n/a   
 
 
-
 
NC_007577  PMT9312_0171  two component LuxR family transcriptional regulator  36.13 
 
 		 242 aa  77  0.00000000000007  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_1074  response regulator receiver protein  35.96 
 
 		 229 aa  77  0.00000000000008  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000246777  normal  0.491091 
 
 
-
 
NC_009901  Spea_2969  two component transcriptional regulator  37.72 
 
 		 229 aa  77  0.00000000000008  Shewanella pealeana ATCC 700345  Bacteria  decreased coverage  0.000000855765  n/a   
 
 
-
 
NC_005945  BAS4484  DNA-binding response regulator PhoP  36.84 
 
 		 239 aa  76.6  0.00000000000009  Bacillus anthracis str. Sterne  Bacteria  normal  1  n/a   
 
 
-
 
NC_005957  BT9727_4319  alkaline phosphatase synthesis response regulator  36.84 
 
 		 239 aa  76.6  0.00000000000009  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK4330  alkaline phosphatase synthesis response regulator  36.84 
 
 		 239 aa  76.6  0.00000000000009  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_011773  BCAH820_4704  DNA-binding response regulator PhoP  36.84 
 
 		 239 aa  76.6  0.00000000000009  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000673192 
 
 
-
 
NC_007530  GBAA_4833  DNA-binding response regulator PhoP  36.84 
 
 		 239 aa  76.6  0.00000000000009  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0982965  n/a   
 
 
-
 
NC_011658  BCAH187_A4714  DNA-binding response regulator PhoP  36.84 
 
 		 239 aa  76.6  0.00000000000009  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_008554  Sfum_2892  two component transcriptional regulator  33.07 
 
 		 227 aa  76.6  0.00000000000009  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  0.0239565 
 
 
-
 
NC_010184  BcerKBAB4_4419  two component transcriptional regulator  36.84 
 
 		 239 aa  76.3  0.0000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_4720  DNA-binding response regulator PhoP  36.84 
 
 		 239 aa  76.6  0.0000000000001  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_0415  two component transcriptional regulator  38.18 
 
 		 231 aa  76.3  0.0000000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  0.777838 
 
 
-
 
NC_012034  Athe_1487  two component transcriptional regulator, winged helix family  33.57 
 
 		 232 aa  76.3  0.0000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.487145  n/a   
 
 
-
 
NC_011830  Dhaf_4050  two component transcriptional regulator, winged helix family  37.96 
 
 		 227 aa  76.3  0.0000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00552008  n/a   
 
 
-
 
NC_009428  Rsph17025_1472  response regulator receiver protein  35.77 
 
 		 122 aa  76.6  0.0000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.413604  normal  1 
 
 
-
 
NC_009674  Bcer98_3274  two component transcriptional regulator  35.96 
 
 		 238 aa  76.3  0.0000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_011725  BCB4264_A4699  DNA-binding response regulator PhoP  36.84 
 
 		 239 aa  76.6  0.0000000000001  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B0539  DNA-binding response regulator PhoP  36.84 
 
 		 239 aa  76.6  0.0000000000001  Bacillus cereus G9842  Bacteria  normal  1  hitchhiker  0.000130788 
 
 
-
 
NC_009457  VC0395_A0253  DNA-binding response regulator PhoB  34.85 
 
 		 229 aa  76.3  0.0000000000001  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_014248  Aazo_2887  LuxR family two component transcriptional regulator  38.05 
 
 		 225 aa  75.9  0.0000000000002  'Nostoc azollae' 0708  Bacteria  normal  0.526109  n/a   
 
 
-
 
NC_008816  A9601_01871  two-component response regulator  35.29 
 
 		 242 aa  75.9  0.0000000000002  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.528311  n/a   
 
 
-
 
NC_011666  Msil_0834  two component transcriptional regulator PhoB, winged helix family  36.51 
 
 		 265 aa  75.9  0.0000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0108417 
 
 
-
 
NC_009952  Dshi_1406  response regulator receiver protein  35.96 
 
 		 121 aa  75.9  0.0000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0894387  normal  1 
 
 
-
 
NC_011769  DvMF_0882  two component transcriptional regulator, winged helix family  36.94 
 
 		 230 aa  75.9  0.0000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.148935 
 
 
-
 
NC_014248  Aazo_2987  LuxR family two component transcriptional regulator  34.71 
 
 		 231 aa  75.9  0.0000000000002  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_008312  Tery_4491  two component LuxR family transcriptional regulator  34.75 
 
 		 233 aa  75.9  0.0000000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  1  normal  0.697305 
 
 
-
 
NC_013739  Cwoe_5515  response regulator receiver protein  34.55 
 
 		 134 aa  75.9  0.0000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013173  Dbac_2662  two component transcriptional regulator, winged helix family  31.97 
 
 		 231 aa  75.5  0.0000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_0251  response regulator receiver protein  35.85 
 
 		 126 aa  75.9  0.0000000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.102048 
 
 
-
 
NC_008817  P9515_01981  two-component response regulator  33.61 
 
 		 242 aa  75.1  0.0000000000003  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.125891  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  36.72 
 
 		 235 aa  75.1  0.0000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  36.72 
 
 		 235 aa  75.1  0.0000000000003  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  36.72 
 
 		 235 aa  75.1  0.0000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  36.72 
 
 		 235 aa  75.1  0.0000000000003  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_007335  PMN2A_1537  two component LuxR family transcriptional regulator  38.74 
 
 		 242 aa  75.1  0.0000000000003  Prochlorococcus marinus str. NATL2A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  36.72 
 
 		 235 aa  75.1  0.0000000000003  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_007519  Dde_2387  two component transcriptional regulator  36.94 
 
 		 229 aa  75.1  0.0000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00115026  n/a   
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  36.72 
 
 		 235 aa  75.1  0.0000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_010718  Nther_0984  two component transcriptional regulator, winged helix family  35.71 
 
 		 246 aa  74.7  0.0000000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.0723779 
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  36.72 
 
 		 235 aa  75.1  0.0000000000003  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_013501  Rmar_1501  response regulator receiver protein  32.52 
 
 		 132 aa  75.1  0.0000000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  0.153095  n/a   
 
 
-
 
NC_009831  Ssed_3303  two component transcriptional regulator  36.84 
 
 		 229 aa  75.5  0.0000000000003  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000702519  hitchhiker  0.00000106408 
 
 
-
 
NC_008819  NATL1_02441  two-component response regulator  38.1 
 
 		 242 aa  75.1  0.0000000000003  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.72299  normal  1 
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  35.09 
 
 		 234 aa  74.7  0.0000000000004  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_011662  Tmz1t_2649  response regulator receiver protein  33.88 
 
 		 122 aa  74.7  0.0000000000004  Thauera sp. MZ1T  Bacteria  normal  0.857048  n/a   
 
 
-
 
NC_007404  Tbd_2551  response regulator receiver domain-containing protein  37.84 
 
 		 121 aa  74.7  0.0000000000004  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  37.17 
 
 		 225 aa  74.7  0.0000000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_011830  Dhaf_1756  two component transcriptional regulator, winged helix family  36.22 
 
 		 230 aa  74.7  0.0000000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.769657  n/a   
 
 
-
 
NC_010506  Swoo_3452  two component transcriptional regulator  36.51 
 
 		 229 aa  74.7  0.0000000000004  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00686704  hitchhiker  0.000158375 
 
 
-
 
NC_009976  P9211_01871  two-component response regulator  36.94 
 
 		 242 aa  74.7  0.0000000000004  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011830  Dhaf_0940  two component transcriptional regulator, winged helix family  39.64 
 
 		 237 aa  74.7  0.0000000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.324642  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  36.72 
 
 		 235 aa  74.3  0.0000000000005  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_004347  SO_1558  phosphate regulon response regulator PhoB  35.96 
 
 		 239 aa  74.3  0.0000000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_2879  two component transcriptional regulator  35.96 
 
 		 229 aa  74.3  0.0000000000005  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000000143261  hitchhiker  0.00000615281 
 
 
-
 
NC_009438  Sputcn32_1296  two component transcriptional regulator  35.96 
 
 		 229 aa  74.3  0.0000000000005  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000000460678  n/a   
 
 
-
 
NC_013456  VEA_004385  phosphate regulon transcriptional regulatory protein PhoB  33.33 
 
 		 229 aa  74.3  0.0000000000005  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_007513  Syncc9902_2107  two component LuxR family transcriptional regulator  38.74 
 
 		 245 aa  74.3  0.0000000000005  Synechococcus sp. CC9902  Bacteria  normal  1  n/a   
 
 
-
 
NC_007517  Gmet_2428  response regulator receiver domain-containing protein  31.97 
 
 		 128 aa  74.3  0.0000000000005  Geobacter metallireducens GS-15  Bacteria  normal  0.0310268  normal  1 
 
 
-
 
NC_011663  Sbal223_2981  two component transcriptional regulator PhoB, winged helix family  35.96 
 
 		 229 aa  74.3  0.0000000000005  Shewanella baltica OS223  Bacteria  hitchhiker  0.000000220801  hitchhiker  0.00121997 
 
 
-
 
NC_009718  Fnod_1490  two component transcriptional regulator  34.55 
 
 		 239 aa  74.3  0.0000000000005  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.000000000120928  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  36.72 
 
 		 235 aa  74.3  0.0000000000005  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_009052  Sbal_1378  two component transcriptional regulator  35.96 
 
 		 229 aa  74.3  0.0000000000005  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000291119  n/a   
 
 
-
 
NC_009665  Shew185_1364  two component transcriptional regulator  35.96 
 
 		 229 aa  74.3  0.0000000000005  Shewanella baltica OS185  Bacteria  hitchhiker  0.0000657343  n/a   
 
 
-
 
NC_008321  Shewmr4_2709  two component transcriptional regulator  35.96 
 
 		 229 aa  74.3  0.0000000000005  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00000407229  decreased coverage  0.000000263688 
 
 
-
 
NC_008322  Shewmr7_2777  two component transcriptional regulator  35.96 
 
 		 229 aa  74.3  0.0000000000005  Shewanella sp. MR-7  Bacteria  unclonable  0.000000628627  decreased coverage  0.000208697 
 
 
-
 
NC_009997  Sbal195_1403  two component transcriptional regulator  35.96 
 
 		 229 aa  74.3  0.0000000000005  Shewanella baltica OS195  Bacteria  hitchhiker  0.00109837  normal  0.0219543 
 
 
-
 
NC_011146  Gbem_0080  response regulator receiver modulated metal dependent phosphohydrolase  36.13 
 
 		 357 aa  74.3  0.0000000000006  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
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