209 homologs were found in PanDaTox collection
for query gene Pden_1545 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008686  Pden_1545  histone family protein nucleoid-structuring protein H-NS  100 
 
 
105 aa  208  2e-53  Paracoccus denitrificans PD1222  Bacteria  normal  0.718681  normal  0.0365604 
 
 
-
 
NC_008687  Pden_3349  histone family protein nucleoid-structuring protein H-NS  76.19 
 
 
105 aa  147  6e-35  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.340557 
 
 
-
 
NC_008687  Pden_3156  histone family protein nucleoid-structuring protein H-NS  79.05 
 
 
105 aa  144  6e-34  Paracoccus denitrificans PD1222  Bacteria  normal  0.116532  normal  0.477373 
 
 
-
 
NC_007489  RSP_4056  histone-like nucleoid-structuring protein H-NS  55.24 
 
 
105 aa  120  5e-27  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007801  Jann_4229  histone-like nucleoid-structuring protein H-NS  51.43 
 
 
108 aa  110  4.0000000000000004e-24  Jannaschia sp. CCS1  Bacteria  normal  0.289876  normal 
 
 
-
 
NC_007493  RSP_1517  HNS family histone-like protein  56.31 
 
 
104 aa  106  9.000000000000001e-23  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.632748  n/a   
 
 
-
 
NC_009432  Rsph17025_4385  histone family protein nucleoid-structuring protein H-NS  51.43 
 
 
105 aa  106  9.000000000000001e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0118502  normal  0.891502 
 
 
-
 
NC_009049  Rsph17029_0169  histone family protein nucleoid-structuring protein H-NS  56.31 
 
 
104 aa  106  9.000000000000001e-23  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.485688 
 
 
-
 
NC_009428  Rsph17025_2961  histone family protein nucleoid-structuring protein H-NS  57.28 
 
 
104 aa  105  3e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.0570093 
 
 
-
 
NC_009430  Rsph17025_4162  hypothetical protein  48.57 
 
 
247 aa  103  9e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_1957  histone-like nucleoid-structuring protein H-NS  42.16 
 
 
121 aa  85.5  2e-16  Psychrobacter cryohalolentis K5  Bacteria  hitchhiker  0.00140882  normal 
 
 
-
 
NC_009430  Rsph17025_4136  hypothetical protein  46.67 
 
 
132 aa  84  7e-16  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2782  histone family protein nucleoid-structuring protein H-NS  48.04 
 
 
102 aa  83.2  0.000000000000001  Paracoccus denitrificans PD1222  Bacteria  normal  0.0983316  normal 
 
 
-
 
NC_009952  Dshi_1024  histone family protein nucleoid-structuring protein H-NS  42.11 
 
 
105 aa  82  0.000000000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0737742  normal  0.814079 
 
 
-
 
NC_007802  Jann_0798  histone-like nucleoid-structuring protein H-NS  38.61 
 
 
119 aa  80.9  0.000000000000005  Jannaschia sp. CCS1  Bacteria  normal  0.835916  normal 
 
 
-
 
NC_008043  TM1040_3107  histone-like nucleoid-structuring protein H-NS  42.86 
 
 
106 aa  80.5  0.000000000000006  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_007489  RSP_7372  H-NS family DNA-binding protein  41.9 
 
 
104 aa  78.6  0.00000000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0002  histone-like nucleoid-structuring protein H-NS  38.46 
 
 
131 aa  74.7  0.0000000000004  Rhodobacter sphaeroides 2.4.1  Bacteria  hitchhiker  0.0049965  n/a   
 
 
-
 
NC_013422  Hneap_0439  histone family protein nucleoid-structuring protein H-NS  39.25 
 
 
107 aa  73.2  0.000000000001  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000352276  n/a   
 
 
-
 
NC_010717  PXO_03185  DNA-binding protein  38.02 
 
 
153 aa  70.5  0.000000000007  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1489  histone family protein nucleoid-structuring protein H-NS  38.32 
 
 
115 aa  68.2  0.00000000004  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1986  histone family protein nucleoid-structuring protein H-NS  33.65 
 
 
105 aa  67.4  0.00000000006  Alkalilimnicola ehrlichii MLHE-1  Bacteria  decreased coverage  0.000000114439  normal  0.0153833 
 
 
-
 
NC_007298  Daro_2525  histone-like nucleoid-structuring protein H-NS  31.43 
 
 
105 aa  66.6  0.0000000001  Dechloromonas aromatica RCB  Bacteria  decreased coverage  9.16284e-21  normal  0.0335348 
 
 
-
 
NC_013421  Pecwa_1651  histone family protein nucleoid-structuring protein H-NS  38.46 
 
 
107 aa  66.2  0.0000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0526  histone family protein nucleoid-structuring protein H-NS  36.89 
 
 
127 aa  65.5  0.0000000003  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.280908 
 
 
-
 
NC_007964  Nham_3068  histone-like nucleoid-structuring protein H-NS  33.04 
 
 
122 aa  61.2  0.000000005  Nitrobacter hamburgensis X14  Bacteria  normal  0.280777  n/a   
 
 
-
 
NC_007958  RPD_2738  histone-like nucleoid-structuring protein H-NS  31.86 
 
 
139 aa  60.8  0.000000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.789792  normal 
 
 
-
 
NC_007964  Nham_3069  histone-like nucleoid-structuring protein H-NS  35.04 
 
 
130 aa  59.3  0.00000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.39515  n/a   
 
 
-
 
NC_010577  XfasM23_1726  histone family protein nucleoid-structuring protein H-NS  33.61 
 
 
124 aa  59.3  0.00000002  Xylella fastidiosa M23  Bacteria  normal  0.442577  n/a   
 
 
-
 
NC_010513  Xfasm12_1793  DNA-binding protein  33.61 
 
 
124 aa  59.3  0.00000002  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3493  histone family protein nucleoid-structuring protein H-NS  41.54 
 
 
113 aa  57.8  0.00000005  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.572012  normal  0.600215 
 
 
-
 
NC_009092  Shew_2585  histone family protein nucleoid-structuring protein H-NS  36.94 
 
 
130 aa  57.4  0.00000007  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000212728  normal 
 
 
-
 
NC_007348  Reut_B5596  nucleoid protein H-NS  37.33 
 
 
102 aa  56.2  0.0000001  Ralstonia eutropha JMP134  Bacteria  normal  0.16143  n/a   
 
 
-
 
NC_007952  Bxe_B2975  putative H-NS-like transcription regulator  45.45 
 
 
96 aa  55.8  0.0000002  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1444  histone family protein nucleoid-structuring protein H-NS  36.36 
 
 
130 aa  55.5  0.0000002  Shewanella sediminis HAW-EB3  Bacteria  normal  0.292783  normal 
 
 
-
 
NC_002977  MCA1863  regulator protein, putative  33.33 
 
 
112 aa  55.5  0.0000003  Methylococcus capsulatus str. Bath  Bacteria  unclonable  0.0000000371113  n/a   
 
 
-
 
NC_008789  Hhal_0441  histone family protein nucleoid-structuring protein H-NS  29.25 
 
 
124 aa  55.1  0.0000003  Halorhodospira halophila SL1  Bacteria  normal  0.940607  n/a   
 
 
-
 
NC_007974  Rmet_3677  histone-like nucleoid-structuring protein H-NS  37.33 
 
 
102 aa  54.7  0.0000004  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.166379 
 
 
-
 
NC_012791  Vapar_1795  histone family protein nucleoid-structuring protein H-NS  35.4 
 
 
114 aa  54.3  0.0000006  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011148  SeAg_A0019  H-NS histone family  42.05 
 
 
141 aa  53.9  0.0000007  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  n/a    n/a   
 
 
-
 
NC_011071  Smal_3562  histone family protein nucleoid-structuring protein H-NS  33.33 
 
 
139 aa  53.9  0.0000008  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.626821  normal  0.684238 
 
 
-
 
NC_012855  Rpic12D_4689  histone family protein nucleoid-structuring protein H-NS  41.67 
 
 
92 aa  53.1  0.000001  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4285  histone family protein nucleoid-structuring protein H-NS  39.18 
 
 
97 aa  52.8  0.000001  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6934  histone family protein nucleoid-structuring protein H-NS  40.91 
 
 
96 aa  53.1  0.000001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.909068  normal 
 
 
-
 
NC_012912  Dd1591_2575  histone family protein nucleoid-structuring protein H-NS  40.18 
 
 
133 aa  52.4  0.000002  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1152  histone family protein nucleoid-structuring protein H-NS  40.18 
 
 
133 aa  52.8  0.000002  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3387  DNA-binding protein H-NS-like protein  32.43 
 
 
144 aa  51.6  0.000003  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2905  H-NS histone family protein  38 
 
 
97 aa  52  0.000003  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0048  H-NS histone family protein  38 
 
 
125 aa  52  0.000003  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3384  histone-like nucleoid-structuring protein H-NS  41 
 
 
97 aa  51.6  0.000003  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I3155  H-NS histone family protein  38 
 
 
97 aa  52  0.000003  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3404  H-NS histone family protein  38 
 
 
97 aa  52  0.000003  Burkholderia mallei SAVP1  Bacteria  normal  0.237819  n/a   
 
 
-
 
NC_008836  BMA10229_A1636  H-NS histone family protein  38 
 
 
97 aa  52  0.000003  Burkholderia mallei NCTC 10229  Bacteria  normal  0.741416  n/a   
 
 
-
 
NC_009074  BURPS668_3827  H-NS histone family protein  38 
 
 
97 aa  52  0.000003  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3909  H-NS histone family protein  38 
 
 
97 aa  52  0.000003  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2965  H-NS histone family protein  38 
 
 
97 aa  52  0.000003  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2825  histone-like nucleoid-structuring protein H-NS  41 
 
 
97 aa  51.6  0.000004  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0281  histone family protein nucleoid-structuring protein H-NS  41 
 
 
97 aa  51.6  0.000004  Burkholderia cenocepacia HI2424  Bacteria  normal  0.166699  n/a   
 
 
-
 
NC_010508  Bcenmc03_0263  histone family protein nucleoid-structuring protein H-NS  41 
 
 
97 aa  51.6  0.000004  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.820493 
 
 
-
 
NC_009436  Ent638_3149  DNA binding protein, nucleoid-associated  44 
 
 
134 aa  51.2  0.000005  Enterobacter sp. 638  Bacteria  decreased coverage  0.000000112797  normal 
 
 
-
 
NC_011083  SeHA_C4700  DNA-binding protein  30.63 
 
 
144 aa  51.2  0.000005  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0190  histone family protein nucleoid-structuring protein H-NS  42 
 
 
97 aa  50.8  0.000007  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.317548  hitchhiker  0.0000000190695 
 
 
-
 
NC_010086  Bmul_3279  histone family protein nucleoid-structuring protein H-NS  42.39 
 
 
97 aa  50.4  0.000008  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.0515948 
 
 
-
 
NC_010498  EcSMS35_4786  H-NS histone family protein  32.74 
 
 
146 aa  50.4  0.000008  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.428354 
 
 
-
 
NC_008390  Bamb_0195  histone family protein nucleoid-structuring protein H-NS  40 
 
 
97 aa  50.4  0.000008  Burkholderia ambifaria AMMD  Bacteria  normal  0.750004  n/a   
 
 
-
 
NC_010551  BamMC406_0209  histone family protein nucleoid-structuring protein H-NS  40 
 
 
97 aa  50.4  0.000008  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.726678 
 
 
-
 
NC_009438  Sputcn32_2512  histone family protein nucleoid-structuring protein H-NS  30.91 
 
 
130 aa  50.1  0.000009  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00123836  n/a   
 
 
-
 
NC_003296  RS02604  putative HNS-like transcription regulator protein  30.26 
 
 
102 aa  49.7  0.00001  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  0.00414449  normal  0.0842767 
 
 
-
 
NC_007336  Reut_C6347  histone-like nucleoid-structuring protein H-NS  46.43 
 
 
516 aa  49.7  0.00001  Ralstonia eutropha JMP134  Bacteria  decreased coverage  0.0000113528  n/a   
 
 
-
 
NC_007336  Reut_C6382  histone-like nucleoid-structuring protein H-NS  36.17 
 
 
589 aa  49.7  0.00001  Ralstonia eutropha JMP134  Bacteria  normal  0.493779  n/a   
 
 
-
 
NC_010678  Rpic_4238  histone family protein nucleoid-structuring protein H-NS  34.67 
 
 
102 aa  50.1  0.00001  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1150  histone family protein nucleoid-structuring protein H-NS  34.26 
 
 
99 aa  50.1  0.00001  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4348  histone family protein nucleoid-structuring protein H-NS  34.67 
 
 
102 aa  50.1  0.00001  Ralstonia pickettii 12D  Bacteria  normal  normal  0.513312 
 
 
-
 
NC_009901  Spea_2856  histone family protein nucleoid-structuring protein H-NS  32.43 
 
 
130 aa  49.7  0.00001  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2060  histone family protein nucleoid-structuring protein H-NS  35.42 
 
 
91 aa  48.9  0.00002  Thauera sp. MZ1T  Bacteria  normal  0.0796579  n/a   
 
 
-
 
NC_010002  Daci_4465  histone family protein nucleoid-structuring protein H-NS  40.3 
 
 
92 aa  49.3  0.00002  Delftia acidovorans SPH-1  Bacteria  normal  0.695514  normal  0.126063 
 
 
-
 
NC_008825  Mpe_A3165  putative HNS-like transcription regulator protein  32.2 
 
 
118 aa  49.3  0.00002  Methylibium petroleiphilum PM1  Bacteria  normal  hitchhiker  0.00480481 
 
 
-
 
NC_007651  BTH_I2714  DNA-binding protein BprA  33.96 
 
 
111 aa  48.1  0.00004  Burkholderia thailandensis E264  Bacteria  normal  0.344106  n/a   
 
 
-
 
NC_008752  Aave_2580  histone family protein nucleoid-structuring protein H-NS  36.59 
 
 
119 aa  48.1  0.00004  Acidovorax citrulli AAC00-1  Bacteria  normal  0.122678  normal  0.024514 
 
 
-
 
NC_010506  Swoo_3237  histone family protein nucleoid-structuring protein H-NS  35.8 
 
 
131 aa  48.1  0.00004  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.602482 
 
 
-
 
NC_011205  SeD_A3102  DNA binding protein, nucleoid-associated  51.06 
 
 
133 aa  47.4  0.00006  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.669725  normal  0.844597 
 
 
-
 
NC_003296  RS02004  putative HNS-like transcription regulator protein  34.65 
 
 
95 aa  47.8  0.00006  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0969964  normal 
 
 
-
 
NC_011094  SeSA_A2945  DNA binding protein, nucleoid-associated  51.06 
 
 
133 aa  47.4  0.00006  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.14201 
 
 
-
 
NC_011080  SNSL254_A2997  DNA binding protein, nucleoid-associated  51.06 
 
 
133 aa  47.4  0.00006  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.185251  normal  0.0364479 
 
 
-
 
NC_011149  SeAg_B2913  DNA binding protein, nucleoid-associated  51.06 
 
 
133 aa  47.4  0.00006  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2980  DNA binding protein, nucleoid-associated  51.06 
 
 
133 aa  47.4  0.00006  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.681217  normal  0.158314 
 
 
-
 
NC_008759  Pnap_4886  histone family protein nucleoid-structuring protein H-NS  42.86 
 
 
114 aa  47.8  0.00006  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.602991  normal 
 
 
-
 
NC_008825  Mpe_A1370  nucleoid protein H-NS  32.04 
 
 
115 aa  47.8  0.00006  Methylibium petroleiphilum PM1  Bacteria  normal  0.620152  normal 
 
 
-
 
NC_007948  Bpro_3984  histone-like nucleoid-structuring protein H-NS  56.1 
 
 
117 aa  47.4  0.00007  Polaromonas sp. JS666  Bacteria  normal  0.49889  normal  0.888803 
 
 
-
 
NC_010553  BamMC406_6777  histone family protein nucleoid-structuring protein H-NS  36.84 
 
 
99 aa  47.4  0.00007  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2158  histone family protein nucleoid-structuring protein H-NS  36.78 
 
 
96 aa  47.4  0.00007  Delftia acidovorans SPH-1  Bacteria  normal  0.232102  normal  0.811955 
 
 
-
 
NC_009379  Pnuc_0838  histone family protein nucleoid-structuring protein H-NS  36.59 
 
 
94 aa  47  0.00009  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_4633  histone family protein nucleoid-structuring protein H-NS  44.44 
 
 
101 aa  47  0.00009  Burkholderia cenocepacia MC0-3  Bacteria  unclonable  0.000000000000292632  decreased coverage  0.0000243295 
 
 
-
 
NC_007511  Bcep18194_B0132  histone-like nucleoid-structuring protein H-NS  43.62 
 
 
99 aa  46.6  0.0001  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0116  histone family protein nucleoid-structuring protein H-NS  37.62 
 
 
100 aa  46.6  0.0001  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4798  histone family protein nucleoid-structuring protein H-NS  35.92 
 
 
96 aa  46.6  0.0001  Ralstonia pickettii 12J  Bacteria  normal  0.272454  normal  0.166506 
 
 
-
 
NC_011353  ECH74115_5080  Ler  29.27 
 
 
123 aa  46.6  0.0001  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0343561 
 
 
-
 
NC_009783  VIBHAR_01827  hypothetical protein  32.74 
 
 
135 aa  47  0.0001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012857  Rpic12D_3721  histone family protein nucleoid-structuring protein H-NS  35.92 
 
 
96 aa  46.6  0.0001  Ralstonia pickettii 12D  Bacteria  decreased coverage  0.00112888  normal  0.513312 
 
 
-
 
NC_010658  SbBS512_E3212  DNA binding protein, nucleoid-associated  44.44 
 
 
134 aa  45.8  0.0002  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
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