More than 300 homologs were found in PanDaTox collection
for query gene Rpic12D_4348 on replicon NC_012857
Organism: Ralstonia pickettii 12D



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012857  Rpic12D_4348  histone family protein nucleoid-structuring protein H-NS  100 
 
 
102 aa  209  1e-53  Ralstonia pickettii 12D  Bacteria  normal  normal  0.513312 
 
 
-
 
NC_010678  Rpic_4238  histone family protein nucleoid-structuring protein H-NS  100 
 
 
102 aa  209  1e-53  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_003296  RS02604  putative HNS-like transcription regulator protein  87.25 
 
 
102 aa  184  4e-46  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  0.00414449  normal  0.0842767 
 
 
-
 
NC_007974  Rmet_3677  histone-like nucleoid-structuring protein H-NS  68.32 
 
 
102 aa  152  2e-36  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.166379 
 
 
-
 
NC_007348  Reut_B5596  nucleoid protein H-NS  65.35 
 
 
102 aa  147  7e-35  Ralstonia eutropha JMP134  Bacteria  normal  0.16143  n/a   
 
 
-
 
NC_012855  Rpic12D_4934  histone family protein nucleoid-structuring protein H-NS  53 
 
 
103 aa  116  9.999999999999999e-26  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012849  Rpic12D_5155  histone family protein nucleoid-structuring protein H-NS  53.92 
 
 
97 aa  112  2.0000000000000002e-24  Ralstonia pickettii 12D  Bacteria  normal  0.336859  normal  0.425922 
 
 
-
 
NC_011662  Tmz1t_1136  histone family protein nucleoid-structuring protein H-NS  46.15 
 
 
104 aa  93.2  1e-18  Thauera sp. MZ1T  Bacteria  hitchhiker  0.00265311  n/a   
 
 
-
 
NC_009076  BURPS1106A_3943  H-NS histone family protein  46.08 
 
 
98 aa  87.8  4e-17  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2867  H-NS histone family protein  46.08 
 
 
98 aa  87.8  4e-17  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0084  H-NS histone family protein  46.08 
 
 
98 aa  87.8  4e-17  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1677  H-NS histone family protein  46.08 
 
 
98 aa  87.8  4e-17  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3862  H-NS histone family protein  46.08 
 
 
98 aa  87.8  4e-17  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3442  H-NS histone family protein  46.08 
 
 
98 aa  87.8  4e-17  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3109  H-NS histone family protein  46.08 
 
 
98 aa  87.8  4e-17  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1730  histone family protein nucleoid-structuring protein H-NS  56.76 
 
 
72 aa  85.9  2e-16  Ralstonia pickettii 12J  Bacteria  normal  0.386763  normal  0.64236 
 
 
-
 
NC_007951  Bxe_A0112  HNS-like transcriptional regulator  47.12 
 
 
100 aa  84.7  3e-16  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.00000000000000994611  normal 
 
 
-
 
NC_010623  Bphy_4285  histone family protein nucleoid-structuring protein H-NS  40.2 
 
 
97 aa  85.1  3e-16  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008759  Pnap_4886  histone family protein nucleoid-structuring protein H-NS  45.26 
 
 
114 aa  84.3  5e-16  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.602991  normal 
 
 
-
 
NC_010681  Bphyt_3822  histone family protein nucleoid-structuring protein H-NS  46.15 
 
 
100 aa  84.3  5e-16  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.000137841  normal 
 
 
-
 
NC_008826  Mpe_B0416  nucleoid protein H-NS  41.28 
 
 
114 aa  82  0.000000000000002  Methylibium petroleiphilum PM1  Bacteria  normal  0.0193878  hitchhiker  0.00866736 
 
 
-
 
NC_008825  Mpe_A1370  nucleoid protein H-NS  42.61 
 
 
115 aa  82.4  0.000000000000002  Methylibium petroleiphilum PM1  Bacteria  normal  0.620152  normal 
 
 
-
 
NC_010676  Bphyt_6934  histone family protein nucleoid-structuring protein H-NS  43.27 
 
 
96 aa  81.3  0.000000000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  0.909068  normal 
 
 
-
 
NC_007510  Bcep18194_A3351  histone-like nucleoid-structuring protein H-NS  42.16 
 
 
98 aa  80.9  0.000000000000006  Burkholderia sp. 383  Bacteria  normal  normal  0.383074 
 
 
-
 
NC_003296  RS00711  putative HNS-like transcription regulator protein  40.95 
 
 
96 aa  80.5  0.000000000000007  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  0.0000172984  normal 
 
 
-
 
NC_012791  Vapar_1795  histone family protein nucleoid-structuring protein H-NS  38.61 
 
 
114 aa  79.3  0.00000000000001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3189  H-NS histone family protein  44.12 
 
 
98 aa  80.1  0.00000000000001  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0175  histone family protein nucleoid-structuring protein H-NS  43.14 
 
 
98 aa  79.7  0.00000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0162  histone family protein nucleoid-structuring protein H-NS  43.14 
 
 
98 aa  79.7  0.00000000000001  Burkholderia ambifaria AMMD  Bacteria  normal  0.121985  n/a   
 
 
-
 
NC_010678  Rpic_4798  histone family protein nucleoid-structuring protein H-NS  40 
 
 
96 aa  78.2  0.00000000000004  Ralstonia pickettii 12J  Bacteria  normal  0.272454  normal  0.166506 
 
 
-
 
NC_008060  Bcen_2858  histone-like nucleoid-structuring protein H-NS  41.18 
 
 
98 aa  77.8  0.00000000000004  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.259744  n/a   
 
 
-
 
NC_010508  Bcenmc03_0231  histone family protein nucleoid-structuring protein H-NS  41.18 
 
 
98 aa  77.8  0.00000000000004  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3721  histone family protein nucleoid-structuring protein H-NS  40 
 
 
96 aa  78.2  0.00000000000004  Ralstonia pickettii 12D  Bacteria  decreased coverage  0.00112888  normal  0.513312 
 
 
-
 
NC_008542  Bcen2424_0249  histone family protein nucleoid-structuring protein H-NS  41.18 
 
 
98 aa  77.8  0.00000000000004  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2975  putative H-NS-like transcription regulator  41.18 
 
 
96 aa  77.8  0.00000000000005  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4282  histone family protein nucleoid-structuring protein H-NS  39.22 
 
 
100 aa  76.6  0.0000000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0105949  normal  0.0174683 
 
 
-
 
NC_010084  Bmul_0158  histone family protein nucleoid-structuring protein H-NS  43.14 
 
 
98 aa  76.6  0.0000000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3493  histone family protein nucleoid-structuring protein H-NS  44.79 
 
 
113 aa  75.5  0.0000000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.572012  normal  0.600215 
 
 
-
 
NC_010524  Lcho_2290  histone family protein nucleoid-structuring protein H-NS  40.35 
 
 
112 aa  75.1  0.0000000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007650  BTH_II1558  H-NS histone family protein  43.14 
 
 
131 aa  73.6  0.0000000000009  Burkholderia thailandensis E264  Bacteria  normal  0.752713  n/a   
 
 
-
 
NC_010086  Bmul_3279  histone family protein nucleoid-structuring protein H-NS  40.78 
 
 
97 aa  73.2  0.000000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.0515948 
 
 
-
 
NC_009078  BURPS1106A_A0079  H-NS histone family protein  42.31 
 
 
108 aa  72  0.000000000002  Burkholderia pseudomallei 1106a  Bacteria  unclonable  0.0000151227  n/a   
 
 
-
 
NC_006349  BMAA0068  H-NS histone family protein  42.31 
 
 
99 aa  72.8  0.000000000002  Burkholderia mallei ATCC 23344  Bacteria  unclonable  0.00000000181219  n/a   
 
 
-
 
NC_010002  Daci_2158  histone family protein nucleoid-structuring protein H-NS  43.68 
 
 
96 aa  72.4  0.000000000002  Delftia acidovorans SPH-1  Bacteria  normal  0.232102  normal  0.811955 
 
 
-
 
NC_007435  BURPS1710b_A1570  H-NS histone family protein  42.31 
 
 
173 aa  72.8  0.000000000002  Burkholderia pseudomallei 1710b  Bacteria  unclonable  0.000000000103893  n/a   
 
 
-
 
NC_008835  BMA10229_1506  H-NS histone family protein  42.31 
 
 
108 aa  72  0.000000000002  Burkholderia mallei NCTC 10229  Bacteria  unclonable  0.00000000000000220305  n/a   
 
 
-
 
NC_007974  Rmet_4935  putative H-NS histon-like DNA-binding protein  37.96 
 
 
104 aa  72.4  0.000000000002  Cupriavidus metallidurans CH34  Bacteria  normal  0.529231  normal  0.833407 
 
 
-
 
NC_009075  BURPS668_A0098  H-NS histone family protein  42.31 
 
 
108 aa  72  0.000000000002  Burkholderia pseudomallei 668  Bacteria  unclonable  0.00000000000000405362  n/a   
 
 
-
 
NC_008784  BMASAVP1_1225  H-NS histone family protein  42.31 
 
 
99 aa  72.8  0.000000000002  Burkholderia mallei SAVP1  Bacteria  decreased coverage  0.000000000000571024  n/a   
 
 
-
 
NC_007336  Reut_C6005  histone-like nucleoid-structuring protein H-NS  42.11 
 
 
103 aa  72  0.000000000003  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2742  histone family protein nucleoid-structuring protein H-NS  36.89 
 
 
123 aa  72  0.000000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.0000655544 
 
 
-
 
NC_010086  Bmul_3806  histone family protein nucleoid-structuring protein H-NS  42.05 
 
 
100 aa  72  0.000000000003  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0101066  hitchhiker  0.00273603 
 
 
-
 
NC_003295  RSc0867  putative HNS-like transcription regulator protein  37.5 
 
 
96 aa  71.6  0.000000000004  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.139885 
 
 
-
 
NC_008825  Mpe_A3165  putative HNS-like transcription regulator protein  37.62 
 
 
118 aa  71.2  0.000000000004  Methylibium petroleiphilum PM1  Bacteria  normal  hitchhiker  0.00480481 
 
 
-
 
NC_008782  Ajs_1598  nucleoid protein H-NS  35.78 
 
 
117 aa  70.9  0.000000000005  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4633  histone family protein nucleoid-structuring protein H-NS  40.78 
 
 
101 aa  70.9  0.000000000007  Burkholderia cenocepacia MC0-3  Bacteria  unclonable  0.000000000000292632  decreased coverage  0.0000243295 
 
 
-
 
NC_010622  Bphy_0116  histone family protein nucleoid-structuring protein H-NS  40.95 
 
 
100 aa  70.5  0.000000000007  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008758  Pnap_4578  histone family protein nucleoid-structuring protein H-NS  34.55 
 
 
121 aa  70.1  0.000000000009  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6929  histone family protein nucleoid-structuring protein H-NS  40.23 
 
 
99 aa  68.9  0.00000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.599841  normal 
 
 
-
 
NC_011353  ECH74115_5080  Ler  35.71 
 
 
123 aa  68.9  0.00000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0343561 
 
 
-
 
NC_007348  Reut_B4990  histone-like nucleoid-structuring protein H-NS  37.04 
 
 
104 aa  68.2  0.00000000003  Ralstonia eutropha JMP134  Bacteria  normal  0.0212879  n/a   
 
 
-
 
NC_007650  BTH_II2207  H-NS histone family protein  38.24 
 
 
96 aa  68.6  0.00000000003  Burkholderia thailandensis E264  Bacteria  decreased coverage  0.0000000000144624  n/a   
 
 
-
 
NC_010622  Bphy_2981  histone family protein nucleoid-structuring protein H-NS  43.27 
 
 
100 aa  68.6  0.00000000003  Burkholderia phymatum STM815  Bacteria  normal  0.207499  decreased coverage  0.0000000417224 
 
 
-
 
NC_006348  BMA2905  H-NS histone family protein  34.31 
 
 
97 aa  67.8  0.00000000004  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0048  H-NS histone family protein  37.14 
 
 
125 aa  68.2  0.00000000004  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3404  H-NS histone family protein  34.31 
 
 
97 aa  67.8  0.00000000004  Burkholderia mallei SAVP1  Bacteria  normal  0.237819  n/a   
 
 
-
 
NC_009076  BURPS1106A_3909  H-NS histone family protein  34.31 
 
 
97 aa  67.8  0.00000000004  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1636  H-NS histone family protein  34.31 
 
 
97 aa  67.8  0.00000000004  Burkholderia mallei NCTC 10229  Bacteria  normal  0.741416  n/a   
 
 
-
 
NC_007651  BTH_I3155  H-NS histone family protein  34.31 
 
 
97 aa  67.8  0.00000000004  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3827  H-NS histone family protein  34.31 
 
 
97 aa  67.8  0.00000000004  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2965  H-NS histone family protein  34.31 
 
 
97 aa  67.8  0.00000000004  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_5767  histone family protein nucleoid-structuring protein H-NS  39.08 
 
 
99 aa  67  0.00000000008  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008835  BMA10229_1739  H-NS histone family protein  37.25 
 
 
96 aa  67  0.00000000009  Burkholderia mallei NCTC 10229  Bacteria  unclonable  0.00000000000000443719  n/a   
 
 
-
 
NC_009075  BURPS668_A3002  H-NS histone family protein  37.25 
 
 
96 aa  67  0.00000000009  Burkholderia pseudomallei 668  Bacteria  unclonable  0.00000000000000136233  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1174  H-NS histone family protein  43.18 
 
 
104 aa  67  0.00000000009  Burkholderia pseudomallei 1106a  Bacteria  normal  0.354816  n/a   
 
 
-
 
NC_008835  BMA10229_0742  H-NS histone family protein  43.18 
 
 
104 aa  67  0.00000000009  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2886  H-NS histone family protein  37.25 
 
 
96 aa  67  0.00000000009  Burkholderia pseudomallei 1106a  Bacteria  hitchhiker  0.000145694  n/a   
 
 
-
 
NC_009079  BMA10247_A0401  H-NS histone family protein  37.25 
 
 
96 aa  67  0.00000000009  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.000000304691  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1239  H-NS histone family protein  37.25 
 
 
96 aa  67  0.00000000009  Burkholderia pseudomallei 1710b  Bacteria  unclonable  0.0000000000958752  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2442  H-NS histone family protein  43.68 
 
 
131 aa  67  0.00000000009  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1706  H-NS histone family protein  43.18 
 
 
104 aa  67  0.00000000009  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1551  H-NS histone family protein  37.25 
 
 
96 aa  67  0.00000000009  Burkholderia mallei SAVP1  Bacteria  unclonable  0.0000000000000358636  n/a   
 
 
-
 
NC_006349  BMAA0720  H-NS histone family protein  43.18 
 
 
96 aa  66.6  0.0000000001  Burkholderia mallei ATCC 23344  Bacteria  normal  0.232457  n/a   
 
 
-
 
NC_009075  BURPS668_A1247  H-NS histone family protein  43.18 
 
 
96 aa  66.6  0.0000000001  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1144  histone family protein nucleoid-structuring protein H-NS  37.5 
 
 
98 aa  65.5  0.0000000002  Acidovorax sp. JS42  Bacteria  normal  0.439674  normal  0.582774 
 
 
-
 
NC_008752  Aave_1150  histone family protein nucleoid-structuring protein H-NS  38 
 
 
99 aa  65.9  0.0000000002  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7383  histone-like nucleoid-structuring protein H-NS  38.83 
 
 
102 aa  65.5  0.0000000002  Burkholderia sp. 383  Bacteria  normal  normal  0.907507 
 
 
-
 
NC_007511  Bcep18194_B0132  histone-like nucleoid-structuring protein H-NS  38.83 
 
 
99 aa  65.5  0.0000000002  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1065  histone family protein nucleoid-structuring protein H-NS  37.5 
 
 
98 aa  65.5  0.0000000002  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3984  histone-like nucleoid-structuring protein H-NS  34.78 
 
 
117 aa  65.5  0.0000000003  Polaromonas sp. JS666  Bacteria  normal  0.49889  normal  0.888803 
 
 
-
 
NC_007510  Bcep18194_A3384  histone-like nucleoid-structuring protein H-NS  34.62 
 
 
97 aa  64.7  0.0000000004  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3525  histone-like nucleoid-structuring protein H-NS  33.06 
 
 
123 aa  64.7  0.0000000004  Rhodoferax ferrireducens T118  Bacteria  normal  0.698098  n/a   
 
 
-
 
NC_010803  Clim_0490  hypothetical protein  33.66 
 
 
125 aa  64.3  0.0000000005  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0190  histone family protein nucleoid-structuring protein H-NS  34.62 
 
 
97 aa  64.3  0.0000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.317548  hitchhiker  0.0000000190695 
 
 
-
 
NC_010508  Bcenmc03_0263  histone family protein nucleoid-structuring protein H-NS  34.62 
 
 
97 aa  64.3  0.0000000005  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.820493 
 
 
-
 
NC_008060  Bcen_2825  histone-like nucleoid-structuring protein H-NS  34.62 
 
 
97 aa  64.3  0.0000000005  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0195  histone family protein nucleoid-structuring protein H-NS  34.62 
 
 
97 aa  64.3  0.0000000005  Burkholderia ambifaria AMMD  Bacteria  normal  0.750004  n/a   
 
 
-
 
NC_008542  Bcen2424_0281  histone family protein nucleoid-structuring protein H-NS  34.62 
 
 
97 aa  64.3  0.0000000005  Burkholderia cenocepacia HI2424  Bacteria  normal  0.166699  n/a   
 
 
-
 
NC_010551  BamMC406_0209  histone family protein nucleoid-structuring protein H-NS  34.62 
 
 
97 aa  64.3  0.0000000005  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.726678 
 
 
-
 
NC_006349  BMAA0365  H-NS histone family protein  36.27 
 
 
96 aa  64.3  0.0000000006  Burkholderia mallei ATCC 23344  Bacteria  decreased coverage  0.00000040716  n/a   
 
 
-
 
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