Gene TM1040_3107 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3107 
Symbol 
ID4075554 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp78144 
End bp78464 
Gene Length321 bp 
Protein Length106 aa 
Translation table11 
GC content54% 
IMG OID638004609 
Producthistone-like nucleoid-structuring protein H-NS 
Protein accessionYP_611343 
Protein GI99078085 
COG category[R] General function prediction only 
COG ID[COG2916] DNA-binding protein H-NS 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCATCG ACCTGAACAA AATGTCCCGA AAGGACCTGC TTCAGTTGCG CAAAGACGTT 
GAAAAGGCAC TGAAAGATGC TGAACTGCGC GAACGCACCG AGGCTCTGAA AGCCGCCGAA
CAGGCTGCCG CTGAATATGG CTTCTCTCTC GACGAAGTCC TCTCTGGCCC GGCAAAGGGT
GCTGCGCGGA AATCAAAAGC CAGCCCGAAA TACCGTAATC CCGAAAATCC GGACGAAACG
TGGACAGGCC GTGGCCGCAA ACCGCATTGG GTCCATACTG CCCTGAGCAA TGGTGTCGAT
ATATCCGATC TGGAAATTTG A
 
Protein sequence
MSIDLNKMSR KDLLQLRKDV EKALKDAELR ERTEALKAAE QAAAEYGFSL DEVLSGPAKG 
AARKSKASPK YRNPENPDET WTGRGRKPHW VHTALSNGVD ISDLEI