More than 300 homologs were found in PanDaTox collection
for query gene PC1_3039 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_3039  methyl-accepting chemotaxis sensory transducer  100 
 
 
555 aa  1110    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.525671  n/a   
 
 
-
 
NC_013421  Pecwa_1236  methyl-accepting chemotaxis sensory transducer  90.45 
 
 
555 aa  966    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2587  methyl-accepting chemotaxis sensory transducer  74.59 
 
 
550 aa  760    Dickeya dadantii Ech703  Bacteria  normal  0.83115  n/a   
 
 
-
 
NC_012912  Dd1591_1594  methyl-accepting chemotaxis sensory transducer  44.49 
 
 
534 aa  376  1e-103  Dickeya zeae Ech1591  Bacteria  normal  0.221441  n/a   
 
 
-
 
NC_007973  Rmet_0160  methyl-accepting chemotaxis sensory transducer  47.4 
 
 
513 aa  371  1e-101  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1561  methyl-accepting chemotaxis sensory transducer  43.69 
 
 
533 aa  349  7e-95  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2175  methyl-accepting chemotaxis sensory transducer  41.7 
 
 
530 aa  336  7e-91  Dickeya dadantii Ech703  Bacteria  normal  0.746333  n/a   
 
 
-
 
NC_012912  Dd1591_2271  methyl-accepting chemotaxis sensory transducer  41.43 
 
 
530 aa  333  7.000000000000001e-90  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0913  methyl-accepting chemotaxis sensory transducer  40.88 
 
 
514 aa  301  3e-80  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.00710557  normal  0.212573 
 
 
-
 
NC_012880  Dd703_0727  methyl-accepting chemotaxis sensory transducer  36.74 
 
 
559 aa  287  4e-76  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5641  methyl-accepting chemotaxis sensory transducer  58.78 
 
 
519 aa  286  5e-76  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_003296  RS02364  putative methyl-accepting chemotaxis transducer transmembrane protein  41.83 
 
 
524 aa  285  2.0000000000000002e-75  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.0291845 
 
 
-
 
NC_007952  Bxe_B2682  methyl-accepting chemotaxis sensory transducer  45.55 
 
 
580 aa  284  2.0000000000000002e-75  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_2055  methyl-accepting chemotaxis protein  53.19 
 
 
529 aa  284  3.0000000000000004e-75  Burkholderia pseudomallei 668  Bacteria  normal  0.495945  n/a   
 
 
-
 
NC_010498  EcSMS35_1753  methyl-accepting chemotaxis protein III  50.79 
 
 
546 aa  284  3.0000000000000004e-75  Escherichia coli SMS-3-5  Bacteria  normal  hitchhiker  2.79367e-17 
 
 
-
 
NC_009076  BURPS1106A_2110  methyl-accepting chemotaxis protein  53.19 
 
 
529 aa  284  3.0000000000000004e-75  Burkholderia pseudomallei 1106a  Bacteria  normal  0.589994  n/a   
 
 
-
 
NC_007348  Reut_B3808  histidine kinase, HAMP region: chemotaxis sensory transducer  50 
 
 
569 aa  283  4.0000000000000003e-75  Ralstonia eutropha JMP134  Bacteria  normal  0.880796  n/a   
 
 
-
 
NC_007434  BURPS1710b_2250  putative methyl-accepting chemotaxis transmembrane protein  53.19 
 
 
497 aa  283  4.0000000000000003e-75  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01378  methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor  50.48 
 
 
546 aa  283  5.000000000000001e-75  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2225  methyl-accepting chemotaxis sensory transducer  50.48 
 
 
546 aa  283  5.000000000000001e-75  Escherichia coli DH1  Bacteria  normal  0.213228  n/a   
 
 
-
 
NC_012892  B21_01390  hypothetical protein  50.48 
 
 
546 aa  283  5.000000000000001e-75  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_2026  methyl-accepting chemotaxis protein III  49.69 
 
 
470 aa  283  5.000000000000001e-75  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  hitchhiker  0.000000214401 
 
 
-
 
NC_009801  EcE24377A_1600  methyl-accepting chemotaxis protein III  50.48 
 
 
546 aa  283  5.000000000000001e-75  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3195  methyl-accepting chemotaxis sensory transducer  51.83 
 
 
357 aa  283  7.000000000000001e-75  Burkholderia phymatum STM815  Bacteria  normal  0.0463138  normal 
 
 
-
 
NC_010468  EcolC_2238  methyl-accepting chemotaxis sensory transducer  50.16 
 
 
546 aa  283  8.000000000000001e-75  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A1503  methyl-accepting chemotaxis protein III  50.16 
 
 
546 aa  283  8.000000000000001e-75  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3580  methyl-accepting chemotaxis sensory transducer  44.44 
 
 
572 aa  283  8.000000000000001e-75  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0999  methyl-accepting chemotaxis protein, putative  52.89 
 
 
497 aa  282  1e-74  Burkholderia mallei ATCC 23344  Bacteria  normal  0.325426  n/a   
 
 
-
 
NC_012912  Dd1591_0395  methyl-accepting chemotaxis sensory transducer  45.74 
 
 
556 aa  281  2e-74  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  47.16 
 
 
569 aa  281  2e-74  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2019  methyl-accepting chemotaxis sensory transducer  45.12 
 
 
567 aa  280  4e-74  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_4071  methyl-accepting chemotaxis sensory transducer  37.39 
 
 
553 aa  280  4e-74  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4354  methyl-accepting chemotaxis sensory transducer  36.51 
 
 
555 aa  279  9e-74  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5547  methyl-accepting chemotaxis sensory transducer  49.01 
 
 
520 aa  278  1e-73  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5306  methyl-accepting chemotaxis sensory transducer  56.88 
 
 
565 aa  278  2e-73  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00488588  normal  0.0415564 
 
 
-
 
NC_010627  Bphy_7569  methyl-accepting chemotaxis sensory transducer  35.78 
 
 
576 aa  278  2e-73  Burkholderia phymatum STM815  Bacteria  normal  0.448898  normal  0.153923 
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  48.66 
 
 
575 aa  277  4e-73  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  50.45 
 
 
585 aa  277  4e-73  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  45 
 
 
661 aa  276  6e-73  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  38.37 
 
 
572 aa  275  1.0000000000000001e-72  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_009074  BURPS668_0502  methyl-accepting chemotaxis protein  50.72 
 
 
546 aa  275  1.0000000000000001e-72  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0520  methyl-accepting chemotaxis protein  50.72 
 
 
546 aa  275  2.0000000000000002e-72  Burkholderia pseudomallei 1106a  Bacteria  normal  0.640738  n/a   
 
 
-
 
NC_008836  BMA10229_A1435  methyl-accepting chemotaxis protein  50.72 
 
 
546 aa  275  2.0000000000000002e-72  Burkholderia mallei NCTC 10229  Bacteria  normal  0.631191  n/a   
 
 
-
 
NC_007951  Bxe_A2023  methyl-accepting chemotaxis sensory transducer  50.16 
 
 
538 aa  275  2.0000000000000002e-72  Burkholderia xenovorans LB400  Bacteria  normal  0.205381  normal 
 
 
-
 
NC_009080  BMA10247_2862  methyl-accepting chemotaxis protein  50.72 
 
 
546 aa  275  2.0000000000000002e-72  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0157  methyl-accepting chemotaxis protein  50.72 
 
 
546 aa  275  2.0000000000000002e-72  Burkholderia mallei SAVP1  Bacteria  normal  0.293853  n/a   
 
 
-
 
NC_006348  BMA3184  methyl-accepting chemotaxis protein  50.72 
 
 
511 aa  274  3e-72  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0685  methyl-accepting chemotaxis protein  50.72 
 
 
526 aa  274  3e-72  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0695  methyl-accepting chemotaxis sensory transducer  35.37 
 
 
561 aa  274  3e-72  Dickeya zeae Ech1591  Bacteria  normal  0.305861  n/a   
 
 
-
 
NC_012917  PC1_0112  methyl-accepting chemotaxis sensory transducer  50.81 
 
 
556 aa  274  3e-72  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  47.93 
 
 
566 aa  274  3e-72  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_012880  Dd703_1569  methyl-accepting chemotaxis sensory transducer  36.94 
 
 
554 aa  274  4.0000000000000004e-72  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5868  methyl-accepting chemotaxis sensory transducer  52.53 
 
 
541 aa  273  6e-72  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0438  methyl-accepting chemotaxis protein  50.43 
 
 
512 aa  273  6e-72  Burkholderia thailandensis E264  Bacteria  normal  0.212381  n/a   
 
 
-
 
NC_009436  Ent638_2139  methyl-accepting chemotaxis sensory transducer  54.06 
 
 
512 aa  273  6e-72  Enterobacter sp. 638  Bacteria  normal  0.619697  normal 
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  48.28 
 
 
543 aa  272  1e-71  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0289  methyl-accepting chemotaxis sensory transducer  48.06 
 
 
598 aa  272  1e-71  Burkholderia phymatum STM815  Bacteria  normal  normal  0.759991 
 
 
-
 
NC_012917  PC1_0113  methyl-accepting chemotaxis sensory transducer  45.71 
 
 
559 aa  272  1e-71  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2751  methyl-accepting chemotaxis sensory transducer  50.42 
 
 
521 aa  272  1e-71  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1417  methyl-accepting chemotaxis sensory transducer  35.94 
 
 
554 aa  272  1e-71  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.37293  n/a   
 
 
-
 
NC_007974  Rmet_5250  methyl-accepting chemotaxis protein, sensory transducer  52.6 
 
 
677 aa  272  1e-71  Cupriavidus metallidurans CH34  Bacteria  normal  0.0837898  normal  0.0130353 
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  40 
 
 
579 aa  272  1e-71  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010681  Bphyt_0557  methyl-accepting chemotaxis sensory transducer  50.16 
 
 
627 aa  272  1e-71  Burkholderia phytofirmans PsJN  Bacteria  normal  0.191348  normal  0.480006 
 
 
-
 
NC_010552  BamMC406_3664  methyl-accepting chemotaxis sensory transducer  37.23 
 
 
562 aa  271  2e-71  Burkholderia ambifaria MC40-6  Bacteria  normal  0.248385  normal  0.243257 
 
 
-
 
NC_012917  PC1_4072  methyl-accepting chemotaxis sensory transducer  36.5 
 
 
540 aa  271  2.9999999999999997e-71  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A4301  methyl-accepting chemotaxis sensory transducer  53.09 
 
 
587 aa  270  4e-71  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0111  methyl-accepting chemotaxis sensory transducer  50.32 
 
 
556 aa  270  5.9999999999999995e-71  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5601  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  56.38 
 
 
551 aa  270  5.9999999999999995e-71  Ralstonia eutropha JMP134  Bacteria  normal  0.510218  n/a   
 
 
-
 
NC_012917  PC1_2526  methyl-accepting chemotaxis sensory transducer  45.8 
 
 
554 aa  270  5.9999999999999995e-71  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  49.7 
 
 
537 aa  270  7e-71  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_008390  Bamb_2891  methyl-accepting chemotaxis sensory transducer  49.86 
 
 
521 aa  270  7e-71  Burkholderia ambifaria AMMD  Bacteria  normal  0.657214  n/a   
 
 
-
 
NC_013421  Pecwa_2831  methyl-accepting chemotaxis sensory transducer  48.8 
 
 
554 aa  269  8e-71  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2145  methyl-accepting chemotaxis protein  49.71 
 
 
781 aa  269  8e-71  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.297887  normal 
 
 
-
 
NC_007348  Reut_B5597  methyl-accepting chemotaxis sensory transducer  46.44 
 
 
570 aa  269  1e-70  Ralstonia eutropha JMP134  Bacteria  normal  0.253624  n/a   
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  47.8 
 
 
589 aa  268  1e-70  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
NC_013421  Pecwa_0106  methyl-accepting chemotaxis sensory transducer  50.97 
 
 
556 aa  268  1e-70  Pectobacterium wasabiae WPP163  Bacteria  normal  0.405526  n/a   
 
 
-
 
NC_010508  Bcenmc03_2845  methyl-accepting chemotaxis sensory transducer  49.33 
 
 
545 aa  268  1e-70  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.788597  normal 
 
 
-
 
NC_007348  Reut_B5230  methyl-accepting chemotaxis sensory transducer  59.39 
 
 
518 aa  268  2e-70  Ralstonia eutropha JMP134  Bacteria  normal  0.530292  n/a   
 
 
-
 
NC_010465  YPK_1753  methyl-accepting chemotaxis sensory transducer  48.62 
 
 
557 aa  268  2e-70  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_4162  methyl-accepting chemotaxis sensory transducer  55.82 
 
 
615 aa  268  2e-70  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4050  methyl-accepting chemotaxis sensory transducer  55.82 
 
 
615 aa  268  2e-70  Ralstonia pickettii 12J  Bacteria  normal  0.996584  normal 
 
 
-
 
NC_012912  Dd1591_0792  methyl-accepting chemotaxis sensory transducer  43.99 
 
 
542 aa  268  2e-70  Dickeya zeae Ech1591  Bacteria  normal  0.821346  n/a   
 
 
-
 
NC_008060  Bcen_2221  methyl-accepting chemotaxis sensory transducer  49.33 
 
 
545 aa  268  2e-70  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1858  methyl-accepting chemotaxis sensory transducer  45.63 
 
 
552 aa  268  2e-70  Enterobacter sp. 638  Bacteria  normal  normal  0.332391 
 
 
-
 
NC_008542  Bcen2424_2834  methyl-accepting chemotaxis sensory transducer  49.33 
 
 
545 aa  268  2e-70  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2457  methyl-accepting chemotaxis sensory transducer  41.93 
 
 
555 aa  268  2e-70  Enterobacter sp. 638  Bacteria  normal  0.890786  normal 
 
 
-
 
NC_009708  YpsIP31758_1642  methyl-accepting chemotaxis protein  48.62 
 
 
557 aa  268  2e-70  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A4159  methyl-accepting chemotaxis sensory transducer  49.84 
 
 
611 aa  267  2.9999999999999995e-70  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1742  methyl-accepting chemotaxis sensory transducer  44.79 
 
 
579 aa  267  4e-70  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4047  methyl-accepting chemotaxis sensory transducer  52.16 
 
 
559 aa  267  4e-70  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4046  methyl-accepting chemotaxis sensory transducer  49.03 
 
 
560 aa  267  4e-70  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00041  chemotaxis protein  50.99 
 
 
752 aa  267  4e-70  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.292066  n/a   
 
 
-
 
NC_009708  YpsIP31758_1631  methyl-accepting chemotaxis protein  44.79 
 
 
579 aa  267  4e-70  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2095  methyl-accepting chemotaxis sensory transducer  50.93 
 
 
520 aa  267  5e-70  Ralstonia pickettii 12J  Bacteria  normal  0.649492  normal  0.265934 
 
 
-
 
NC_012917  PC1_1208  methyl-accepting chemotaxis sensory transducer  46.32 
 
 
555 aa  266  5e-70  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.000392698  n/a   
 
 
-
 
NC_013421  Pecwa_1849  methyl-accepting chemotaxis sensory transducer  49.24 
 
 
570 aa  266  5e-70  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0104  methyl-accepting chemotaxis sensory transducer  45.21 
 
 
548 aa  266  5e-70  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2374  methyl-accepting chemotaxis protein  58.09 
 
 
586 aa  267  5e-70  Burkholderia thailandensis E264  Bacteria  normal  0.205822  n/a   
 
 
-
 
NC_010002  Daci_5410  methyl-accepting chemotaxis sensory transducer  46.58 
 
 
635 aa  266  5e-70  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A3516  methyl-accepting chemotaxis protein  48.31 
 
 
557 aa  266  5e-70  Yersinia pestis Angola  Bacteria  normal  normal  0.698348 
 
 
-
 
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