| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3039 |
|---|
| Symbol | |
|---|
| ID | 8133994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3422966 |
|---|
| End bp | 3424633 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644866322 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_003018598 |
|---|
| Protein GI | 253689408 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.525671 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATCA CGCAACGCTT GCTGCTGACG TTTTCGCTAA TGTCGCTAGC ACTTATCTCA
TTAGTTATAG TCACTTTATC ATTGTTATCA GGGTTCCAGT CTCGTTTTGA ATATGTTCAG
GACAATGCGA TTCCGAGCAT CAAAGATTTA AATAGTCTGG TGGATAAAAG TAATTCGCTG
GTGCTTTTTT TGTATCGTCA TCAGACCACG GATGACGACC GTAAGCTGCC CGCGATCGAA
CAGGACATCA ATAGAACCAT CGAGGAAATA AAGAACCTCA ATGAGTACTA CCTGATCAAT
GATGTCTCCA GTGAGGAAGA TCGACAACTG ACCAACACGG CGATTGACCT GACCAAAAAA
TTACAGGCGT CACTACCTGT GTTTCTTAAT GCATCAAAGG CAAATCAAAA CGAGATCGCG
CTTGGCCTGT TGCAGGGAAC GGGTGGACCT GGAGAAGCAG TTCGTAACCT GCTCGCCAAT
TACCGTAAAC AGTTCGATCT GAATGTTGAA ATGGGCGATG CATTGCGTCA GGTGAATAAA
CGGGTCTATG AGCAAACGTG GTTTGGTCTG TTGTCCGGTA CGTTACTGAT CGTGTTACTG
ATCGGCTTTT TTGCGGTGAG AACCATTCTG GGTATTAGAA AAAGCTTGAA CAATATGAGT
CAAACGATGG AGAACGTCAG CACGCATCTC GACTTGACGA TTCAAGCTGA CGATCGGCGC
AAAGATGAAG TGGGAAATAC TGCCCGTGCC TTTAATAGCC TGATGCACCG GGTATCTTCG
GCGTTGGCAT CAGTGAGTGC GTCATCGCAG TCGGTGAGTA GCGCGGCGAC GCAGATTGCC
GCGGGTAATG AAGATTTGTC ATCCCGTACC GAGGAACAGG CTGCTTCGCT GGAACAAACC
GCCGCCAGTA TGACGGAAAT CAGTGAGACA GTGCGCCAGA ATGCGGAGAA CACGCAACAG
GCCAGCCTGC TGGCGGGGAA TGCCAGCCGA ATTTCCATCA ATAGCGCGGA TTCCGTGAAC
ACGATGCTGA ATACGATGGA ACATATTCGT ACCAGCTCGG GCAAGATCAC CGACATTATT
GCGCTTATCG AAGGGATTGC ATTTCAGACC AATATTCTTG CCCTGAATGC GGCGGTAGAA
GCAGCGCGCG CCGGCGAGCA GGGACGCGGT TTTGCGGTGG TGGCGGGAGA AGTGCGCACG
CTGGCACAGC GGTCGTCCAC GGCGGCGCGT GAAATTAAGG ATTTGATTGA TGCTTCAAAC
TCGCTGGTAT CGGCAGGTGT TGATCAGGCC AGCGACGTAG GGAAAAACAT GTCGGCGATG
AAAGACGCGA TCCAACAGGT GACGGATTTG GTGAATGAAA TCGCGGCGGC GACCGAGGAA
CAAAGCCGAG GTATCAGTCA GGTGCATCAG GCCGTTAACC AGATGGACGA TGTGACTCAG
CAAAACGCCT CATTGGTGGA GGAGGCTTCT GCGGCGTCGC AGTCGCTACA AGAGCAGGCG
AGTACGCTGA GTCAGTTGGT GGGGCAGTTC ACTGTAGGAC AGGTACCTTC TCTGGCGCTG
GCTTCCGCTT CTGCACCTGT GCTACCAGGA ATATCAACGT CGCGTCTTTC TCCCGTGAGG
AAAAAAGGCG TCGTCACTCA GGATGAAACG GACTGGCAGA GTTTCTGA
|
|---|
| Protein sequence | MNITQRLLLT FSLMSLALIS LVIVTLSLLS GFQSRFEYVQ DNAIPSIKDL NSLVDKSNSL
VLFLYRHQTT DDDRKLPAIE QDINRTIEEI KNLNEYYLIN DVSSEEDRQL TNTAIDLTKK
LQASLPVFLN ASKANQNEIA LGLLQGTGGP GEAVRNLLAN YRKQFDLNVE MGDALRQVNK
RVYEQTWFGL LSGTLLIVLL IGFFAVRTIL GIRKSLNNMS QTMENVSTHL DLTIQADDRR
KDEVGNTARA FNSLMHRVSS ALASVSASSQ SVSSAATQIA AGNEDLSSRT EEQAASLEQT
AASMTEISET VRQNAENTQQ ASLLAGNASR ISINSADSVN TMLNTMEHIR TSSGKITDII
ALIEGIAFQT NILALNAAVE AARAGEQGRG FAVVAGEVRT LAQRSSTAAR EIKDLIDASN
SLVSAGVDQA SDVGKNMSAM KDAIQQVTDL VNEIAAATEE QSRGISQVHQ AVNQMDDVTQ
QNASLVEEAS AASQSLQEQA STLSQLVGQF TVGQVPSLAL ASASAPVLPG ISTSRLSPVR
KKGVVTQDET DWQSF
|
|---|
| |