More than 300 homologs were found in PanDaTox collection
for query gene PC1_2086 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013421  Pecwa_0006  methyl-accepting chemotaxis sensory transducer with Cache sensor  56.68 
 
 
667 aa  738    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0007  methyl-accepting chemotaxis sensory transducer with Cache sensor  57.32 
 
 
636 aa  724    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2086  methyl-accepting chemotaxis sensory transducer  100 
 
 
657 aa  1334    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3926  methyl-accepting chemotaxis sensory transducer with Cache sensor  53.73 
 
 
665 aa  681    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2372  methyl-accepting chemotaxis sensory transducer  95.43 
 
 
657 aa  1281    Pectobacterium wasabiae WPP163  Bacteria  normal  0.63052  n/a   
 
 
-
 
NC_007947  Mfla_0352  methyl-accepting chemotaxis sensory transducer  40.06 
 
 
649 aa  453  1.0000000000000001e-126  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.127099 
 
 
-
 
NC_010623  Bphy_4943  methyl-accepting chemotaxis sensory transducer  41.87 
 
 
571 aa  374  1e-102  Burkholderia phymatum STM815  Bacteria  normal  0.769292  normal 
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  51.69 
 
 
585 aa  328  3e-88  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_012912  Dd1591_0055  methyl-accepting chemotaxis sensory transducer  52.12 
 
 
628 aa  325  1e-87  Dickeya zeae Ech1591  Bacteria  normal  0.608397  n/a   
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  47.98 
 
 
661 aa  318  2e-85  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1099  methyl-accepting chemotaxis sensory transducer  33.28 
 
 
699 aa  318  2e-85  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0428  methyl-accepting chemotaxis sensory transducer  53.02 
 
 
597 aa  316  9.999999999999999e-85  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_4161  methyl-accepting chemotaxis sensory transducer  51.69 
 
 
628 aa  314  2.9999999999999996e-84  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A1341  methyl-accepting chemotaxis sensory transducer  53.77 
 
 
558 aa  314  2.9999999999999996e-84  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5641  methyl-accepting chemotaxis sensory transducer  53.27 
 
 
519 aa  314  2.9999999999999996e-84  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_4443  methyl-accepting chemotaxis sensory transducer  52.77 
 
 
630 aa  312  1e-83  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1838  methyl-accepting chemotaxis sensory transducer  49.71 
 
 
667 aa  311  2e-83  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3407  methyl-accepting chemotaxis sensory transducer  52.74 
 
 
545 aa  311  2e-83  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3137  methyl-accepting chemotaxis sensory transducer  55.16 
 
 
532 aa  311  2e-83  Rhodoferax ferrireducens T118  Bacteria  normal  0.310324  n/a   
 
 
-
 
NC_010681  Bphyt_2793  methyl-accepting chemotaxis sensory transducer  53.14 
 
 
573 aa  312  2e-83  Burkholderia phytofirmans PsJN  Bacteria  normal  0.22826  normal  0.238924 
 
 
-
 
NC_007511  Bcep18194_B1523  methyl-accepting chemotaxis sensory transducer  52.24 
 
 
539 aa  308  2.0000000000000002e-82  Burkholderia sp. 383  Bacteria  normal  normal  0.377846 
 
 
-
 
NC_013421  Pecwa_3123  methyl-accepting chemotaxis sensory transducer  58.7 
 
 
555 aa  308  2.0000000000000002e-82  Pectobacterium wasabiae WPP163  Bacteria  decreased coverage  0.000142041  n/a   
 
 
-
 
NC_012917  PC1_1208  methyl-accepting chemotaxis sensory transducer  58.7 
 
 
555 aa  308  2.0000000000000002e-82  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.000392698  n/a   
 
 
-
 
NC_007952  Bxe_B0771  methyl-accepting chemotaxis sensory transducer  52.73 
 
 
519 aa  307  4.0000000000000004e-82  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1586  methyl-accepting chemotaxis sensory transducer  52.28 
 
 
553 aa  306  7e-82  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_0769  methyl-accepting chemotaxis sensory transducer  49.72 
 
 
505 aa  306  7e-82  Dickeya zeae Ech1591  Bacteria  normal  0.0409416  n/a   
 
 
-
 
NC_012880  Dd703_1816  methyl-accepting chemotaxis sensory transducer  51.38 
 
 
651 aa  306  7e-82  Dickeya dadantii Ech703  Bacteria  normal  0.700193  n/a   
 
 
-
 
NC_008782  Ajs_3772  methyl-accepting chemotaxis sensory transducer  53.55 
 
 
586 aa  306  8.000000000000001e-82  Acidovorax sp. JS42  Bacteria  normal  0.167359  normal 
 
 
-
 
NC_007404  Tbd_1619  chemotaxis sensory transducer  51.74 
 
 
559 aa  305  1.0000000000000001e-81  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.940607  normal  0.203143 
 
 
-
 
NC_008061  Bcen_3926  methyl-accepting chemotaxis sensory transducer  50.86 
 
 
539 aa  306  1.0000000000000001e-81  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.279293  n/a   
 
 
-
 
NC_008543  Bcen2424_4440  methyl-accepting chemotaxis sensory transducer  50.86 
 
 
539 aa  306  1.0000000000000001e-81  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2481  methyl-accepting chemotaxis sensory transducer  52.58 
 
 
579 aa  305  2.0000000000000002e-81  Rhodoferax ferrireducens T118  Bacteria  normal  0.37743  n/a   
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  52.4 
 
 
589 aa  305  2.0000000000000002e-81  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7569  methyl-accepting chemotaxis sensory transducer  46.53 
 
 
576 aa  305  2.0000000000000002e-81  Burkholderia phymatum STM815  Bacteria  normal  0.448898  normal  0.153923 
 
 
-
 
NC_010515  Bcenmc03_5865  methyl-accepting chemotaxis sensory transducer  51.8 
 
 
539 aa  305  2.0000000000000002e-81  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.439663  normal 
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  52.47 
 
 
579 aa  304  3.0000000000000004e-81  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012912  Dd1591_2086  methyl-accepting chemotaxis sensory transducer  50.45 
 
 
653 aa  305  3.0000000000000004e-81  Dickeya zeae Ech1591  Bacteria  normal  0.0240769  n/a   
 
 
-
 
NC_010465  YPK_0034  methyl-accepting chemotaxis sensory transducer  52.19 
 
 
649 aa  304  4.0000000000000003e-81  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.38678  n/a   
 
 
-
 
NC_009708  YpsIP31758_4122  methyl-accepting chemotaxis protein  52.19 
 
 
649 aa  304  4.0000000000000003e-81  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4495  methyl-accepting chemotaxis sensory transducer  52.76 
 
 
605 aa  304  4.0000000000000003e-81  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0928828 
 
 
-
 
NC_008752  Aave_4446  methyl-accepting chemotaxis sensory transducer  52.45 
 
 
605 aa  303  6.000000000000001e-81  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0260008  normal  0.622584 
 
 
-
 
NC_013421  Pecwa_1849  methyl-accepting chemotaxis sensory transducer  59.09 
 
 
570 aa  303  6.000000000000001e-81  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2548  methyl-accepting chemotaxis protein  52.13 
 
 
525 aa  303  7.000000000000001e-81  Methylibium petroleiphilum PM1  Bacteria  decreased coverage  0.00975221  normal  0.500866 
 
 
-
 
NC_007336  Reut_C6319  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  37.7 
 
 
601 aa  303  8.000000000000001e-81  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc2799  putative methyl-accepting chemotaxis transmembrane protein  53.64 
 
 
515 aa  302  1e-80  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.00825356  normal  0.849966 
 
 
-
 
NC_009436  Ent638_1858  methyl-accepting chemotaxis sensory transducer  51.05 
 
 
552 aa  302  1e-80  Enterobacter sp. 638  Bacteria  normal  normal  0.332391 
 
 
-
 
NC_012917  PC1_3679  methyl-accepting chemotaxis sensory transducer  61.45 
 
 
567 aa  302  1e-80  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0557  methyl-accepting chemotaxis sensory transducer  53.07 
 
 
627 aa  303  1e-80  Burkholderia phytofirmans PsJN  Bacteria  normal  0.191348  normal  0.480006 
 
 
-
 
NC_012880  Dd703_2488  methyl-accepting chemotaxis sensory transducer with Cache sensor  47.7 
 
 
512 aa  302  1e-80  Dickeya dadantii Ech703  Bacteria  normal  0.0783891  n/a   
 
 
-
 
NC_012791  Vapar_4185  methyl-accepting chemotaxis sensory transducer  52.99 
 
 
579 aa  301  2e-80  Variovorax paradoxus S110  Bacteria  normal  0.356775  n/a   
 
 
-
 
NC_010676  Bphyt_6645  methyl-accepting chemotaxis sensory transducer  54.66 
 
 
583 aa  301  2e-80  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.983597 
 
 
-
 
NC_010512  Bcenmc03_6305  methyl-accepting chemotaxis sensory transducer  53.33 
 
 
528 aa  301  3e-80  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4184  methyl-accepting chemotaxis sensory transducer  52.44 
 
 
493 aa  300  5e-80  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_2891  methyl-accepting chemotaxis sensory transducer  55.1 
 
 
521 aa  300  7e-80  Burkholderia ambifaria AMMD  Bacteria  normal  0.657214  n/a   
 
 
-
 
NC_010622  Bphy_0289  methyl-accepting chemotaxis sensory transducer  53.23 
 
 
598 aa  299  1e-79  Burkholderia phymatum STM815  Bacteria  normal  normal  0.759991 
 
 
-
 
NC_010552  BamMC406_4332  methyl-accepting chemotaxis sensory transducer  52.13 
 
 
545 aa  298  2e-79  Burkholderia ambifaria MC40-6  Bacteria  normal  0.167851  normal 
 
 
-
 
NC_012856  Rpic12D_2632  methyl-accepting chemotaxis sensory transducer with Cache sensor  51.14 
 
 
515 aa  298  2e-79  Ralstonia pickettii 12D  Bacteria  normal  0.397554  normal  0.945455 
 
 
-
 
NC_008062  Bcen_6464  methyl-accepting chemotaxis sensory transducer  53.02 
 
 
528 aa  298  2e-79  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2081  methyl-accepting chemotaxis sensory transducer  50.16 
 
 
668 aa  298  2e-79  Dickeya dadantii Ech703  Bacteria  normal  0.622232  n/a   
 
 
-
 
NC_008544  Bcen2424_6699  methyl-accepting chemotaxis sensory transducer  53.02 
 
 
528 aa  298  2e-79  Burkholderia cenocepacia HI2424  Bacteria  normal  0.971949  normal  0.6752 
 
 
-
 
NC_010159  YpAngola_A3774  methyl-accepting chemotaxis protein  52.56 
 
 
649 aa  298  2e-79  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2749  methyl-accepting chemotaxis sensory transducer  52.27 
 
 
578 aa  298  3e-79  Rhodoferax ferrireducens T118  Bacteria  normal  0.274613  n/a   
 
 
-
 
NC_007963  Csal_2019  methyl-accepting chemotaxis sensory transducer  51.47 
 
 
567 aa  298  3e-79  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4188  methyl-accepting chemotaxis sensory transducer with Cache sensor  55.19 
 
 
566 aa  298  3e-79  Variovorax paradoxus S110  Bacteria  normal  0.210427  n/a   
 
 
-
 
NC_010676  Bphyt_4450  methyl-accepting chemotaxis sensory transducer  53.9 
 
 
519 aa  297  4e-79  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.000313766  normal 
 
 
-
 
NC_010682  Rpic_3042  methyl-accepting chemotaxis sensory transducer  51.14 
 
 
515 aa  297  4e-79  Ralstonia pickettii 12J  Bacteria  normal  0.401177  normal 
 
 
-
 
NC_013421  Pecwa_3873  methyl-accepting chemotaxis sensory transducer  58.7 
 
 
575 aa  297  4e-79  Pectobacterium wasabiae WPP163  Bacteria  normal  0.460221  n/a   
 
 
-
 
NC_007510  Bcep18194_A6164  methyl-accepting chemotaxis sensory transducer  51.96 
 
 
544 aa  296  6e-79  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0409  methyl-accepting chemotaxis sensory transducer  50.6 
 
 
585 aa  296  6e-79  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_3683  methyl-accepting chemotaxis sensory transducer  53.23 
 
 
613 aa  296  8e-79  Cupriavidus metallidurans CH34  Bacteria  normal  0.755698  normal  0.0578518 
 
 
-
 
NC_010551  BamMC406_2751  methyl-accepting chemotaxis sensory transducer  54.76 
 
 
521 aa  296  9e-79  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA1130  methyl-accepting chemotaxis protein  52.55 
 
 
580 aa  295  1e-78  Burkholderia mallei ATCC 23344  Bacteria  normal  0.306094  n/a   
 
 
-
 
NC_012880  Dd703_1719  methyl-accepting chemotaxis sensory transducer with Cache sensor  48.25 
 
 
517 aa  295  1e-78  Dickeya dadantii Ech703  Bacteria  unclonable  0.00000712436  n/a   
 
 
-
 
NC_012917  PC1_3910  methyl-accepting chemotaxis sensory transducer  48.78 
 
 
555 aa  295  1e-78  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0927  methyl-accepting chemotaxis protein  52.55 
 
 
580 aa  295  1e-78  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2139  methyl-accepting chemotaxis protein  52.55 
 
 
616 aa  296  1e-78  Burkholderia pseudomallei 1710b  Bacteria  normal  0.942679  n/a   
 
 
-
 
NC_009076  BURPS1106A_2002  methyl-accepting chemotaxis protein  52.55 
 
 
580 aa  295  1e-78  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  44.34 
 
 
566 aa  295  1e-78  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1571  methyl-accepting chemotaxis protein  52.55 
 
 
580 aa  295  1e-78  Burkholderia mallei SAVP1  Bacteria  normal  0.295886  n/a   
 
 
-
 
NC_008836  BMA10229_A0232  methyl-accepting chemotaxis protein  52.55 
 
 
580 aa  295  1e-78  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1983  methyl-accepting chemotaxis protein  52.55 
 
 
580 aa  295  1e-78  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2457  methyl-accepting chemotaxis sensory transducer  52.89 
 
 
555 aa  295  2e-78  Enterobacter sp. 638  Bacteria  normal  0.890786  normal 
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  48.97 
 
 
583 aa  295  2e-78  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_007951  Bxe_A4159  methyl-accepting chemotaxis sensory transducer  51.68 
 
 
611 aa  295  2e-78  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2778  methyl-accepting chemotaxis sensory transducer  49.39 
 
 
544 aa  295  2e-78  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.643433  n/a   
 
 
-
 
NC_012880  Dd703_0071  methyl-accepting chemotaxis sensory transducer  49.44 
 
 
630 aa  295  2e-78  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2374  methyl-accepting chemotaxis protein  52.08 
 
 
586 aa  294  3e-78  Burkholderia thailandensis E264  Bacteria  normal  0.205822  n/a   
 
 
-
 
NC_007651  BTH_I0438  methyl-accepting chemotaxis protein  53.4 
 
 
512 aa  294  4e-78  Burkholderia thailandensis E264  Bacteria  normal  0.212381  n/a   
 
 
-
 
NC_009074  BURPS668_0502  methyl-accepting chemotaxis protein  53.73 
 
 
546 aa  294  4e-78  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1642  methyl-accepting chemotaxis protein  56.29 
 
 
557 aa  293  5e-78  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1753  methyl-accepting chemotaxis sensory transducer  56.29 
 
 
557 aa  293  5e-78  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2643  methyl-accepting chemotaxis sensory transducer  51.8 
 
 
541 aa  294  5e-78  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0238907  normal  0.0164957 
 
 
-
 
NC_010002  Daci_3786  methyl-accepting chemotaxis sensory transducer with Cache sensor  41.12 
 
 
610 aa  293  6e-78  Delftia acidovorans SPH-1  Bacteria  normal  0.0254049  normal  0.3858 
 
 
-
 
NC_006348  BMA3184  methyl-accepting chemotaxis protein  53.73 
 
 
511 aa  293  6e-78  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0520  methyl-accepting chemotaxis protein  53.73 
 
 
546 aa  293  6e-78  Burkholderia pseudomallei 1106a  Bacteria  normal  0.640738  n/a   
 
 
-
 
NC_007434  BURPS1710b_0685  methyl-accepting chemotaxis protein  53.73 
 
 
526 aa  293  6e-78  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0137  methyl-accepting chemotaxis sensory transducer  51.44 
 
 
515 aa  293  6e-78  Burkholderia phymatum STM815  Bacteria  normal  0.5368  normal 
 
 
-
 
NC_009080  BMA10247_2862  methyl-accepting chemotaxis protein  53.73 
 
 
546 aa  293  6e-78  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0157  methyl-accepting chemotaxis protein  53.73 
 
 
546 aa  293  6e-78  Burkholderia mallei SAVP1  Bacteria  normal  0.293853  n/a   
 
 
-
 
NC_008836  BMA10229_A1435  methyl-accepting chemotaxis protein  53.73 
 
 
546 aa  293  6e-78  Burkholderia mallei NCTC 10229  Bacteria  normal  0.631191  n/a   
 
 
-
 
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