| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2086 |
|---|
| Symbol | |
|---|
| ID | 8133030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2385284 |
|---|
| End bp | 2387257 |
|---|
| Gene Length | 1974 bp |
|---|
| Protein Length | 657 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644865375 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_003017662 |
|---|
| Protein GI | 253688472 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGC AATTAATACA AAAAAAGACA ATGAGCACCC GCGCCCAAGT ATTGTTAACC
GGCGCATTAA CCATCGCACT CGGTTTCGCT GTCACCATCG GTGTGCTCAG CTGGCAGTCT
AGCCGTGAAC AAAAATCTCT AGCCGAACGC TATTTACAGC AGATAGCCCA AAGCGAAGCA
CTAAAAATTC AACAGGAGCT TAACTACGCC CGTGATGTAG CGCATAACCT TGGTCAAGGG
TTGGTTGCCT TGCCCACCGC AGGAATTAAA GACCGCGCCG TGGTCGATAA AATGATGGAG
TATGCTCTGC GGGATAACCC GGAATACCTC TCGATTTCCG TCATTTTTGA AGAAAATGCG
TTTGACGGGC GTGATGCCGA GTTTGCCGAT CAACCGGGTC AGGCACCAAA AGGCCGCTAT
GCCTGGTTTG TTGACCGCGA TCAGACTGGC AATTATAAGA TGCATCCTCT GCTTTCTTAT
CTGACTCCTG GACAGGGCGA TTACTACCTG CTGCCGCAAA AGAGTCAGAA AGATACGCTA
ATCGAACCCT ATACCTATGC TTACAACGGC GTTCCAACGC TGCTGACGTC AGTCGCCGCA
CCGATTGTCA GCCAGGGGAA ACTGTGGGGC GTTGTCACTT CCGATATTTC TCTTGCGTCA
TTGCAGCAAA AAGTTAACCA GATTAAGCCT TGGGAAGGCG GCGGCTACGC GATGCTGCTA
TCCAGTGCGA GTAAAGTCAT CTCTTATCCT GATAAGTCCC AGACGAGCAA AGCCTGGCAA
GGGCCGACGG ACAATTTCAC GTCCTCAGTG GTGCAACACG ACGATGCGAT TCTGGGCGAG
CAGGCGCTGG TAACCTGGCA GCCGGTTACT ATAGGCAACA GCACGGAGAA ATGGTATCTG
GGCGTTGTCG CTCCGGTGAG CCAGGTGATG GCCGCTTCTC AACGTCAGTT AATGAATGCC
GTCATCATGA TGGTGATCAG CATCCTGTTG GTGAGTGCGC TGCTGGGCTG GGTATTCAGC
CGTAAAGTCC TGAAACCGCT GGGTGGTGAA CCACGTGAAG CCGCCACCAT TGCGCTGGCC
GTAGCAGAAG GTCGCCTGAG TAATGTGATT GACGTGAAGC CCAACGATCG CAGCAGCTTG
TTTTTCGCTC TGCACACCAT GCAGGCACAG CTGCGTCAGG TGGTAGGGCA GATCAAAGAA
GCCAGCGATT CCGTGCGACA GGGTGCGGGG GAAATTGCCA GCGGCAACCT CAACCTTGCA
TCACGTACGG AGCAGCAGGC TGCCGCATTG GAGCAAACCG CGGCAAGTAT GGAAGAGATC
ACCGCAACCG TGAAACACAA CGCCAATAAT GCCCATCAGG CTACGACGCT CACCGAGAAC
GCTACGAAGA TAGCCCAGCG TGGTGAATCG TTGGTCGGTC AGGTTGTCCA GACGATGGCG
CAGATTGATG AGAGTGCGAA GAAGATTGGC GATATTACCA CCATGATTAA CAGCATCGCT
TTCCAGACCA ATATTCTGGC GCTTAACGCG GCGGTAGAAG CGGCGCGCGC GGGCGAGCAG
GGAAGAGGGT TCGCAGTGGT CGCATCGGAA GTTCGCAACC TGGCACAGCG CAGCGCCAGC
GCGGTGAAAG AGATTGCCGC GCTGATTGAG GAATCCAGCC AGCGCGTTGA AAGTGGCGTT
AAGCTGGTGA ATGATGCCGG TAAAACCATG CAGGATATGA CTCACGCCGT CAGTTCGGTA
CAAAGTATCA TCGGTGAAAT TGTCACAGCA TCGGATGAGC AGGCGAAAGG CATTAGCCAG
GTTACGATTG CCGTCAATGA AATGGATGGC GTTACGCAAC AAAACTCCGC GCTGGTACAG
CAGATGTCTG CTGCGGCCAG CTCACTGGAA GATCAGTCCA TGCTGTTGGC ACAAACGATC
GAGCATTTCC GTTTGGAGCA GCAGCACGCG TTACCCCATG CGCTCTTAAA GTAA
|
|---|
| Protein sequence | MAKQLIQKKT MSTRAQVLLT GALTIALGFA VTIGVLSWQS SREQKSLAER YLQQIAQSEA
LKIQQELNYA RDVAHNLGQG LVALPTAGIK DRAVVDKMME YALRDNPEYL SISVIFEENA
FDGRDAEFAD QPGQAPKGRY AWFVDRDQTG NYKMHPLLSY LTPGQGDYYL LPQKSQKDTL
IEPYTYAYNG VPTLLTSVAA PIVSQGKLWG VVTSDISLAS LQQKVNQIKP WEGGGYAMLL
SSASKVISYP DKSQTSKAWQ GPTDNFTSSV VQHDDAILGE QALVTWQPVT IGNSTEKWYL
GVVAPVSQVM AASQRQLMNA VIMMVISILL VSALLGWVFS RKVLKPLGGE PREAATIALA
VAEGRLSNVI DVKPNDRSSL FFALHTMQAQ LRQVVGQIKE ASDSVRQGAG EIASGNLNLA
SRTEQQAAAL EQTAASMEEI TATVKHNANN AHQATTLTEN ATKIAQRGES LVGQVVQTMA
QIDESAKKIG DITTMINSIA FQTNILALNA AVEAARAGEQ GRGFAVVASE VRNLAQRSAS
AVKEIAALIE ESSQRVESGV KLVNDAGKTM QDMTHAVSSV QSIIGEIVTA SDEQAKGISQ
VTIAVNEMDG VTQQNSALVQ QMSAAASSLE DQSMLLAQTI EHFRLEQQHA LPHALLK
|
|---|
| |