More than 300 homologs were found in PanDaTox collection
for query gene Mext_3486 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_3486  binding-protein-dependent transport systems inner membrane component  100 
 
 
285 aa  520  1e-146  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3794  binding-protein-dependent transport systems inner membrane component  97.54 
 
 
285 aa  484  1e-136  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.185627 
 
 
-
 
NC_010725  Mpop_3868  binding-protein-dependent transport systems inner membrane component  92.98 
 
 
285 aa  440  9.999999999999999e-123  Methylobacterium populi BJ001  Bacteria  normal  normal  0.03471 
 
 
-
 
NC_013889  TK90_0966  binding-protein-dependent transport systems inner membrane component  58.26 
 
 
279 aa  283  3.0000000000000004e-75  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.136509 
 
 
-
 
NC_011666  Msil_2835  binding-protein-dependent transport systems inner membrane component  58.27 
 
 
276 aa  275  5e-73  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_0309  binding-protein dependent transport system inner membrane protein  60.83 
 
 
277 aa  270  1e-71  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.409097 
 
 
-
 
NC_007520  Tcr_0034  binding-protein dependent transport system inner membrane protein  55.65 
 
 
276 aa  260  2e-68  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008062  Bcen_6514  binding-protein-dependent transport systems inner membrane component  45.26 
 
 
275 aa  196  5.000000000000001e-49  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6748  binding-protein-dependent transport systems inner membrane component  45.26 
 
 
275 aa  196  5.000000000000001e-49  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.133303 
 
 
-
 
NC_002947  PP_3635  binding-protein-dependent transport systems inner membrane component  52.75 
 
 
251 aa  194  1e-48  Pseudomonas putida KT2440  Bacteria  normal  0.606268  normal  0.873181 
 
 
-
 
NC_009512  Pput_2098  binding-protein-dependent transport systems inner membrane component  52.75 
 
 
251 aa  192  5e-48  Pseudomonas putida F1  Bacteria  normal  normal  0.660602 
 
 
-
 
NC_008639  Cpha266_0145  binding-protein-dependent transport systems inner membrane component  46.95 
 
 
266 aa  192  7e-48  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6337  binding-protein-dependent transport systems inner membrane component  44.89 
 
 
275 aa  189  4e-47  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0099  nitrate/nitrite/cyanate ABC transporter inner membrane protein  47.16 
 
 
277 aa  187  2e-46  Burkholderia xenovorans LB400  Bacteria  normal  0.291864  normal  0.355691 
 
 
-
 
NC_010322  PputGB1_2277  binding-protein-dependent transport systems inner membrane component  52.29 
 
 
251 aa  186  4e-46  Pseudomonas putida GB-1  Bacteria  normal  normal  0.554921 
 
 
-
 
NC_007595  Synpcc7942_B2630  sulfonate ABC transporter, permease protein, putative  47.25 
 
 
266 aa  180  2e-44  Synechococcus elongatus PCC 7942  Bacteria  normal  0.312135  normal 
 
 
-
 
NC_007952  Bxe_B1541  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  45.34 
 
 
281 aa  177  2e-43  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5822  binding-protein-dependent transport systems inner membrane component  49.12 
 
 
241 aa  177  2e-43  Delftia acidovorans SPH-1  Bacteria  normal  0.367586  normal  0.455347 
 
 
-
 
NC_013510  Tcur_1455  binding-protein-dependent transport systems inner membrane component  50.74 
 
 
269 aa  173  1.9999999999999998e-42  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0865715  n/a   
 
 
-
 
NC_007406  Nwi_0456  binding-protein dependent transport system inner membrane protein  49.01 
 
 
285 aa  171  2e-41  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_34520  ABC transporter permease  51.31 
 
 
254 aa  151  1e-35  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.132889  normal  0.0672965 
 
 
-
 
NC_009656  PSPA7_2932  ABC transporter permease  51.31 
 
 
254 aa  150  2e-35  Pseudomonas aeruginosa PA7  Bacteria  normal  0.451747  n/a   
 
 
-
 
NC_007948  Bpro_2935  binding-protein-dependent transport systems inner membrane component  39.84 
 
 
252 aa  149  4e-35  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  41.04 
 
 
273 aa  140  3e-32  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  41.04 
 
 
273 aa  140  3e-32  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  41.04 
 
 
273 aa  140  3.9999999999999997e-32  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  40.57 
 
 
273 aa  138  8.999999999999999e-32  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_007644  Moth_1974  binding-protein dependent transport system inner membrane protein  41.39 
 
 
261 aa  129  7.000000000000001e-29  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000226251  normal 
 
 
-
 
NC_002947  PP_0208  nitrate ABC transporter, permease protein, putative  40.19 
 
 
260 aa  128  9.000000000000001e-29  Pseudomonas putida KT2440  Bacteria  normal  normal  0.473726 
 
 
-
 
NC_007947  Mfla_2171  nitrate transport permease  36.84 
 
 
272 aa  127  2.0000000000000002e-28  Methylobacillus flagellatus KT  Bacteria  normal  0.0149943  normal 
 
 
-
 
NC_009675  Anae109_3869  binding-protein-dependent transport systems inner membrane component  39.6 
 
 
274 aa  127  3e-28  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5414  putative nitrate ABC transporter (permease protein) (ntrB-like protein)  38.46 
 
 
279 aa  125  8.000000000000001e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.481789  normal 
 
 
-
 
NC_007298  Daro_2152  binding-protein dependent transport system inner membrane protein  37.91 
 
 
271 aa  124  1e-27  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.529987 
 
 
-
 
NC_007778  RPB_2055  nitrate transport permease  39.01 
 
 
279 aa  125  1e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.562067  normal 
 
 
-
 
NC_008463  PA14_19510  ABC transporter permease  38.68 
 
 
274 aa  124  2e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009715  CCV52592_1129  taurine transport system permease protein TauC  38.77 
 
 
241 aa  124  2e-27  Campylobacter curvus 525.92  Bacteria  normal  0.774255  n/a   
 
 
-
 
NC_007404  Tbd_2273  nitrate transport permease  37.5 
 
 
299 aa  123  4e-27  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1679  ABC transporter permease  38.27 
 
 
274 aa  123  4e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  0.451747  n/a   
 
 
-
 
NC_010524  Lcho_3842  nitrate ABC transporter, inner membrane subunit  33.73 
 
 
331 aa  123  4e-27  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008340  Mlg_1704  nitrate ABC transporter, inner membrane subunit  37.5 
 
 
311 aa  123  4e-27  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3973  nitrate ABC transporter, inner membrane subunit  41.44 
 
 
295 aa  122  5e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.930991  normal  0.148208 
 
 
-
 
NC_011146  Gbem_1734  binding-protein-dependent transport systems inner membrane component  40.86 
 
 
252 aa  122  5e-27  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1982  binding-protein dependent transport system inner membrane protein  34.36 
 
 
266 aa  122  6e-27  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.187248  normal 
 
 
-
 
NC_011894  Mnod_5146  binding-protein-dependent transport systems inner membrane component  38.28 
 
 
277 aa  122  6e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0887356  n/a   
 
 
-
 
NC_010511  M446_4508  binding-protein-dependent transport systems inner membrane component  38.76 
 
 
277 aa  122  8e-27  Methylobacterium sp. 4-46  Bacteria  normal  0.854714  normal  0.909107 
 
 
-
 
NC_011004  Rpal_2404  nitrate ABC transporter, inner membrane subunit  38.46 
 
 
279 aa  122  9e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.105129  n/a   
 
 
-
 
NC_009436  Ent638_2324  nitrate ABC transporter, inner membrane subunit  36.73 
 
 
293 aa  121  9.999999999999999e-27  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1900  binding-protein dependent transport system inner membrane protein  38.25 
 
 
252 aa  120  1.9999999999999998e-26  Geobacter metallireducens GS-15  Bacteria  normal  0.128113  hitchhiker  0.000000000000910228 
 
 
-
 
NC_010501  PputW619_4981  binding-protein-dependent transport systems inner membrane component  40.57 
 
 
279 aa  120  3e-26  Pseudomonas putida W619  Bacteria  normal  normal  0.588836 
 
 
-
 
NC_009720  Xaut_2618  nitrate ABC transporter, inner membrane subunit  39.67 
 
 
279 aa  120  3e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.234813 
 
 
-
 
NC_009708  YpsIP31758_1848  ABC transporter permease  38.21 
 
 
273 aa  120  3.9999999999999996e-26  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_0233  ABC transporter, permease protein  40.1 
 
 
241 aa  119  3.9999999999999996e-26  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0291  nitrate transport permease  36.7 
 
 
287 aa  119  3.9999999999999996e-26  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1957  binding-protein-dependent transport systems inner membrane component  38.21 
 
 
273 aa  120  3.9999999999999996e-26  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_3478  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
291 aa  120  3.9999999999999996e-26  Gordonia bronchialis DSM 43247  Bacteria  normal  0.466071  n/a   
 
 
-
 
NC_008825  Mpe_A3486  nitrate ABC transporter permease protein  41.24 
 
 
295 aa  119  3.9999999999999996e-26  Methylibium petroleiphilum PM1  Bacteria  normal  0.236914  normal 
 
 
-
 
NC_011757  Mchl_3671  binding-protein-dependent transport systems inner membrane component  41.48 
 
 
287 aa  119  6e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0347715  normal 
 
 
-
 
NC_013422  Hneap_2205  nitrate ABC transporter, inner membrane subunit  37.91 
 
 
280 aa  119  7e-26  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_0483  binding-protein-dependent transport systems inner membrane component  32.84 
 
 
275 aa  119  7e-26  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3346  binding-protein-dependent transport systems inner membrane component  41.52 
 
 
291 aa  119  7.999999999999999e-26  Methylobacterium extorquens PA1  Bacteria  normal  0.252204  normal 
 
 
-
 
NC_007298  Daro_0831  nitrate transport permease  33.47 
 
 
312 aa  118  9e-26  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0203602 
 
 
-
 
NC_010682  Rpic_0236  nitrate ABC transporter, inner membrane subunit  33.09 
 
 
283 aa  118  9.999999999999999e-26  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0996  nitrate ABC transporter, inner membrane subunit  38.74 
 
 
286 aa  117  1.9999999999999998e-25  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3160  binding-protein dependent transport system inner membrane protein  38.22 
 
 
274 aa  117  1.9999999999999998e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.913146  normal 
 
 
-
 
NC_007908  Rfer_3741  nitrate transport permease  36.7 
 
 
288 aa  117  1.9999999999999998e-25  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0263  binding-protein-dependent transport systems inner membrane component  35 
 
 
265 aa  117  1.9999999999999998e-25  Pseudomonas putida GB-1  Bacteria  normal  0.791848  normal 
 
 
-
 
NC_002947  PP_0231  binding-protein-dependent transport systems inner membrane component  39.62 
 
 
279 aa  117  3e-25  Pseudomonas putida KT2440  Bacteria  normal  0.33405  hitchhiker  0.000710194 
 
 
-
 
NC_004578  PSPTO_5321  taurine ABC transporter, permease protein  40.53 
 
 
285 aa  117  3e-25  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2104  nitrate ABC transporter, inner membrane subunit  38.59 
 
 
283 aa  117  3e-25  Pseudomonas mendocina ymp  Bacteria  normal  0.0291571  normal  0.0240092 
 
 
-
 
NC_007492  Pfl01_0254  binding-protein dependent transport system inner membrane protein  40 
 
 
279 aa  117  3e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.57663 
 
 
-
 
NC_007604  Synpcc7942_1489  nitrate transport permease  38.12 
 
 
278 aa  117  3e-25  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0254  binding-protein-dependent transport systems inner membrane component  35 
 
 
265 aa  117  3e-25  Pseudomonas putida F1  Bacteria  normal  0.293544  normal  0.0445843 
 
 
-
 
NC_009512  Pput_0246  binding-protein-dependent transport systems inner membrane component  39.62 
 
 
279 aa  117  3e-25  Pseudomonas putida F1  Bacteria  normal  0.0570948  normal  0.0921514 
 
 
-
 
NC_010725  Mpop_4662  nitrate ABC transporter, inner membrane subunit  37.36 
 
 
279 aa  117  3e-25  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4973  binding-protein-dependent transport systems inner membrane component  35 
 
 
265 aa  116  3.9999999999999997e-25  Pseudomonas putida W619  Bacteria  normal  0.0722896  normal  0.022026 
 
 
-
 
NC_011729  PCC7424_4677  nitrate ABC transporter, inner membrane subunit  35.53 
 
 
279 aa  116  3.9999999999999997e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_002947  PP_0239  binding-protein-dependent transport systems inner membrane component  34.55 
 
 
265 aa  116  5e-25  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00756787 
 
 
-
 
NC_011992  Dtpsy_2321  nitrate ABC transporter, inner membrane subunit  36.27 
 
 
313 aa  116  5e-25  Acidovorax ebreus TPSY  Bacteria  normal  0.539996  n/a   
 
 
-
 
NC_008782  Ajs_2832  nitrate ABC transporter, inner membrane subunit  36.27 
 
 
313 aa  116  5e-25  Acidovorax sp. JS42  Bacteria  normal  normal  0.442547 
 
 
-
 
NC_012856  Rpic12D_0257  nitrate ABC transporter, inner membrane subunit  33.09 
 
 
283 aa  115  6.9999999999999995e-25  Ralstonia pickettii 12D  Bacteria  normal  normal  0.738144 
 
 
-
 
NC_010172  Mext_1147  nitrate ABC transporter, inner membrane subunit  37.3 
 
 
279 aa  115  6.9999999999999995e-25  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.488584 
 
 
-
 
NC_010511  M446_4817  nitrate ABC transporter, inner membrane subunit  40.11 
 
 
279 aa  115  7.999999999999999e-25  Methylobacterium sp. 4-46  Bacteria  normal  0.775678  hitchhiker  0.00263828 
 
 
-
 
NC_009012  Cthe_2803  binding-protein-dependent transport systems inner membrane component  38.69 
 
 
259 aa  115  7.999999999999999e-25  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00122675  n/a   
 
 
-
 
NC_010725  Mpop_4185  binding-protein-dependent transport systems inner membrane component  39.46 
 
 
283 aa  115  7.999999999999999e-25  Methylobacterium populi BJ001  Bacteria  normal  0.321257  normal 
 
 
-
 
NC_010501  PputW619_5010  binding-protein-dependent transport systems inner membrane component  42 
 
 
260 aa  114  1.0000000000000001e-24  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0326  nitrate transport permease  34.02 
 
 
295 aa  114  1.0000000000000001e-24  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_3807  binding-protein-dependent transport systems inner membrane component  42.41 
 
 
269 aa  114  2.0000000000000002e-24  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3891  binding-protein-dependent transport systems inner membrane component  42.41 
 
 
269 aa  114  2.0000000000000002e-24  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0255  binding-protein-dependent transport systems inner membrane component  39.62 
 
 
279 aa  113  3e-24  Pseudomonas putida GB-1  Bacteria  normal  0.796344  normal 
 
 
-
 
NC_011757  Mchl_1306  nitrate ABC transporter, inner membrane subunit  37.3 
 
 
279 aa  114  3e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2732  nitrate ABC transporter, inner membrane subunit  37.63 
 
 
304 aa  113  3e-24  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0882865  n/a   
 
 
-
 
NC_008554  Sfum_1642  binding-protein-dependent transport systems inner membrane component  39.42 
 
 
231 aa  114  3e-24  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.0324285  normal  0.0160388 
 
 
-
 
NC_003295  RSc0380  putative nitrate transmembrane ABC transporter protein  31.58 
 
 
287 aa  113  4.0000000000000004e-24  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.931268 
 
 
-
 
NC_009632  SaurJH1_0164  binding-protein-dependent transport systems inner membrane component  37 
 
 
253 aa  113  4.0000000000000004e-24  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_19570  ABC transporter permease  36.36 
 
 
262 aa  113  4.0000000000000004e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2146  nitrate ABC transporter, inner membrane subunit  34.72 
 
 
315 aa  113  4.0000000000000004e-24  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_0159  binding-protein-dependent transport systems inner membrane component  37 
 
 
253 aa  113  4.0000000000000004e-24  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0963  nitrate ABC transporter, inner membrane subunit  34.76 
 
 
281 aa  112  5e-24  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.563275 
 
 
-
 
NC_007953  Bxe_C0981  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  34.67 
 
 
279 aa  112  5e-24  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2588  nitrate ABC transporter, inner membrane subunit  38.5 
 
 
279 aa  112  6e-24  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  hitchhiker  0.00171927 
 
 
-
 
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