| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3842 |
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| Symbol | |
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| ID | 6161957 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4305683 |
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| End bp | 4306678 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666615 |
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| Product | nitrate ABC transporter, inner membrane subunit |
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| Protein accession | YP_001792861 |
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| Protein GI | 171060512 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0600] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
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| TIGRFAM ID | [TIGR01183] nitrate ABC transporter, permease protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCAT CCACACTGAG CCTGTCGGCG ATGGCCCCGA CAGCAGGACC GGCGAACCTG
CCGGCCGGTA CGGCGCCCCG CCAGGCGTCG GCCGCCGCGA GCGAGGTGGT GGCCCACCCG
GCCGCGGCCG CCCTGGCCGG GGCTGCGGCC GCGGCGCGGG CTGCCACCTC GAGCTCGACC
GCCGACGTCG TGCTGCGCGA ACAGGGCGCC GCGCTGGCGC GCGCGCAGCG CCGCCGTGCG
CTGGCCAAGG TGCTGGCACC GGCGGTCGGC TTCGCGTTGT TCCTGCTGTT GTGGCAGGCG
GTTTCGCTCG CCGGTGACAA GCAGCTGCCC GGCCCGGCGC CGGTCTGGGA GGCGGCGGTC
AAGCTGTTCT CCGATCCGTT CTACAGCAAC GGCCCGAACG ACCAGGGCAT CGGCTGGAAC
GTGCTGTCGT CGCTGCAGCG CGTGGCCATG GGCTTCGGTC TGGCGGCGCT GGTGGGCATC
CCGCTCGGTT TCATGATCGG GCGCTTCAAT TTCCTCAACC AGATGCTCGA CCCGCTCATC
AGCCTGCTGC GCCCGGTGTC GCCGCTGGCC TGGCTGCCGA TCGGCCTGAT GGTGTTCCAG
GCCGCCAACC CGGCGGCGAT CTGGACCATC TTCATCTGCT CGATCTGGCC GATGGTGATC
AACACCGCGG TCGGCGTGCG CCAGGTGCCG CAGGACTACC TCAACGTCGC GCGGGTGCTC
GAGCTGTCCG AGTGGACGGT GATGCGCAAG ATCCTGTTCC CCGCCGTGCT GCCCTACATG
CTGACCGGCG TGCGGCTGGC CGTGGGAACC GCCTGGCTGG TGATCGTGGC CGCCGAGATG
CTGACCGGCG GGCAGGGCAT CGGCTTCTGG CTGTGGGACG AGTGGAACAA CCTCAACGTG
GCGCACATCC TGATCGCCAT CTTCGTGATC GGTGGAGTCG GTCTGGCGCT CGAAGCGCTG
CTGATGGCCA TCGCCCGCCG TTTCGAATAC GCCTGA
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| Protein sequence | MNASTLSLSA MAPTAGPANL PAGTAPRQAS AAASEVVAHP AAAALAGAAA AARAATSSST
ADVVLREQGA ALARAQRRRA LAKVLAPAVG FALFLLLWQA VSLAGDKQLP GPAPVWEAAV
KLFSDPFYSN GPNDQGIGWN VLSSLQRVAM GFGLAALVGI PLGFMIGRFN FLNQMLDPLI
SLLRPVSPLA WLPIGLMVFQ AANPAAIWTI FICSIWPMVI NTAVGVRQVP QDYLNVARVL
ELSEWTVMRK ILFPAVLPYM LTGVRLAVGT AWLVIVAAEM LTGGQGIGFW LWDEWNNLNV
AHILIAIFVI GGVGLALEAL LMAIARRFEY A
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