More than 300 homologs were found in PanDaTox collection
for query gene Hneap_2338 on replicon NC_013422
Organism: Halothiobacillus neapolitanus c2



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013422  Hneap_2338  cold-shock DNA-binding domain protein  100 
 
 
143 aa  286  5.0000000000000004e-77  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00428193  n/a   
 
 
-
 
NC_009439  Pmen_1263  cold-shock DNA-binding protein family protein  54.12 
 
 
205 aa  90.1  8e-18  Pseudomonas mendocina ymp  Bacteria  normal  0.18948  normal 
 
 
-
 
NC_009656  PSPA7_4547  cold-shock protein  54.32 
 
 
203 aa  87  8e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_4209  cold-shock DNA-binding domain-containing protein  53.66 
 
 
197 aa  86.7  1e-16  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0555  cold-shock DNA-binding protein family protein  42.7 
 
 
155 aa  85.5  2e-16  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.804868  n/a   
 
 
-
 
NC_008463  PA14_51840  cold-shock protein  61.54 
 
 
204 aa  85.9  2e-16  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.192967  hitchhiker  0.0041484 
 
 
-
 
NC_008228  Patl_1543  cold-shock DNA-binding domain-containing protein  59.38 
 
 
68 aa  84.3  5e-16  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2614  cold-shock DNA-binding domain-containing protein  60.32 
 
 
68 aa  82.8  0.000000000000001  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0114712 
 
 
-
 
NC_013457  VEA_001460  cold shock protein CspE  64.62 
 
 
69 aa  82.8  0.000000000000001  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1238  cold-shock DNA-binding domain-containing protein  52.44 
 
 
197 aa  82.4  0.000000000000002  Pseudomonas putida F1  Bacteria  normal  0.267087  normal 
 
 
-
 
NC_009665  Shew185_1705  cold-shock DNA-binding domain-containing protein  60.32 
 
 
69 aa  82  0.000000000000002  Shewanella baltica OS185  Bacteria  hitchhiker  0.000000671273  n/a   
 
 
-
 
NC_009052  Sbal_1708  cold-shock DNA-binding domain-containing protein  60.32 
 
 
69 aa  82  0.000000000000002  Shewanella baltica OS155  Bacteria  hitchhiker  0.000000316023  n/a   
 
 
-
 
NC_009901  Spea_2485  cold-shock DNA-binding domain-containing protein  58.73 
 
 
68 aa  82.4  0.000000000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  0.109641  n/a   
 
 
-
 
NC_009524  PsycPRwf_0769  cold-shock DNA-binding domain-containing protein  61.43 
 
 
71 aa  82  0.000000000000002  Psychrobacter sp. PRwf-1  Bacteria  hitchhiker  0.0000000056179  normal 
 
 
-
 
NC_010506  Swoo_2052  cold-shock DNA-binding domain-containing protein  58.73 
 
 
68 aa  82.4  0.000000000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0435864  normal  0.0231014 
 
 
-
 
NC_009997  Sbal195_1748  cold-shock DNA-binding domain-containing protein  60.32 
 
 
69 aa  82  0.000000000000002  Shewanella baltica OS195  Bacteria  hitchhiker  0.0000249775  normal  0.291294 
 
 
-
 
NC_009438  Sputcn32_1572  cold-shock DNA-binding domain-containing protein  60.32 
 
 
69 aa  82.4  0.000000000000002  Shewanella putrefaciens CN-32  Bacteria  normal  0.259211  n/a   
 
 
-
 
NC_011663  Sbal223_2659  cold-shock DNA-binding domain protein  60.32 
 
 
69 aa  82  0.000000000000002  Shewanella baltica OS223  Bacteria  hitchhiker  0.00019694  hitchhiker  0.00182123 
 
 
-
 
NC_010501  PputW619_4006  cold-shock DNA-binding domain-containing protein  42.06 
 
 
197 aa  82.8  0.000000000000002  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1614  cold-shock DNA-binding domain-containing protein  58.73 
 
 
68 aa  82.8  0.000000000000002  Shewanella loihica PV-4  Bacteria  normal  0.074349  hitchhiker  0.00762568 
 
 
-
 
NC_009784  VIBHAR_05396  hypothetical protein  59.7 
 
 
69 aa  81.6  0.000000000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004347  SO_2787  cold shock domain-contain protein  58.73 
 
 
69 aa  81.6  0.000000000000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_2407  cold-shock DNA-binding protein family protein  58.73 
 
 
69 aa  81.6  0.000000000000003  Shewanella sp. MR-4  Bacteria  normal  0.0284217  normal 
 
 
-
 
NC_008322  Shewmr7_2477  cold-shock DNA-binding protein family protein  58.73 
 
 
69 aa  81.6  0.000000000000003  Shewanella sp. MR-7  Bacteria  normal  0.916903  normal  0.105419 
 
 
-
 
NC_008345  Sfri_1693  cold-shock DNA-binding domain-containing protein  60.32 
 
 
68 aa  82  0.000000000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4097  cold-shock DNA-binding domain-containing protein  60.29 
 
 
69 aa  81.6  0.000000000000003  Pseudomonas putida W619  Bacteria  normal  0.0272616  normal 
 
 
-
 
NC_008577  Shewana3_2569  cold-shock DNA-binding protein family protein  58.73 
 
 
69 aa  81.6  0.000000000000003  Shewanella sp. ANA-3  Bacteria  normal  0.608616  normal  0.369821 
 
 
-
 
NC_007492  Pfl01_4415  cold-shock DNA-binding protein  50 
 
 
200 aa  81.3  0.000000000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0245079  normal 
 
 
-
 
NC_008700  Sama_1970  cold-shock DNA-binding domain-containing protein  58.73 
 
 
69 aa  80.9  0.000000000000005  Shewanella amazonensis SB2B  Bacteria  decreased coverage  0.00428125  normal  0.0463669 
 
 
-
 
NC_007954  Sden_2285  cold-shock protein, DNA-binding  58.73 
 
 
69 aa  80.9  0.000000000000006  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_1522  cold shock protein CspA  58.82 
 
 
69 aa  80.5  0.000000000000007  Pseudomonas putida KT2440  Bacteria  normal  0.310546  normal  0.49084 
 
 
-
 
NC_009512  Pput_4202  cold-shock DNA-binding domain-containing protein  58.82 
 
 
69 aa  80.5  0.000000000000007  Pseudomonas putida F1  Bacteria  normal  0.713161  normal 
 
 
-
 
NC_010322  PputGB1_1127  cold-shock DNA-binding domain-containing protein  58.82 
 
 
69 aa  80.5  0.000000000000007  Pseudomonas putida GB-1  Bacteria  normal  0.53927  normal 
 
 
-
 
NC_002947  PP_1209  cold-shock domain-contain protein  52.56 
 
 
91 aa  79.7  0.00000000000001  Pseudomonas putida KT2440  Bacteria  normal  0.953881  normal 
 
 
-
 
NC_008228  Patl_3784  cold-shock DNA-binding domain-containing protein  53.03 
 
 
69 aa  79.3  0.00000000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4529  cold shock DNA-binding domain-containing protein  61.54 
 
 
68 aa  78.6  0.00000000000002  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1648  cold shock domain-contain protein  57.35 
 
 
69 aa  79  0.00000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009456  VC0395_1092  cold shock DNA-binding domain-containing protein  61.54 
 
 
69 aa  79  0.00000000000002  Vibrio cholerae O395  Bacteria  decreased coverage  0.000741991  n/a   
 
 
-
 
NC_008709  Ping_0755  cold-shock DNA-binding domain-containing protein  54.69 
 
 
68 aa  79  0.00000000000002  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1731  cold-shock DNA-binding domain-containing protein  53.85 
 
 
69 aa  79  0.00000000000002  Marinobacter aquaeolei VT8  Bacteria  unclonable  0.0000000915529  n/a   
 
 
-
 
NC_009439  Pmen_3069  cold-shock DNA-binding protein family protein  57.58 
 
 
69 aa  79  0.00000000000002  Pseudomonas mendocina ymp  Bacteria  normal  0.0986156  normal 
 
 
-
 
NC_010513  Xfasm12_2186  cold-shock DNA-binding domain-containing protein  51.39 
 
 
73 aa  79.3  0.00000000000002  Xylella fastidiosa M12  Bacteria  normal  0.541208  n/a   
 
 
-
 
NC_010577  XfasM23_2098  cold-shock DNA-binding domain-containing protein  51.39 
 
 
73 aa  79.3  0.00000000000002  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp2908  hypothetical protein  55.88 
 
 
71 aa  78.2  0.00000000000003  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_012560  Avin_39180  Cold-shock-like protein  60.32 
 
 
69 aa  78.6  0.00000000000003  Azotobacter vinelandii DJ  Bacteria  normal  0.197755  n/a   
 
 
-
 
NC_008709  Ping_3098  cold-shock DNA-binding domain-containing protein  56.06 
 
 
69 aa  77.8  0.00000000000004  Psychromonas ingrahamii 37  Bacteria  normal  0.208356  normal  0.0206903 
 
 
-
 
NC_008709  Ping_3095  cold-shock DNA-binding domain-containing protein  54.55 
 
 
69 aa  77.8  0.00000000000004  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0410712 
 
 
-
 
NC_007912  Sde_3558  cold-shock DNA-binding protein family protein  53.03 
 
 
69 aa  78.2  0.00000000000004  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.914458 
 
 
-
 
NC_008321  Shewmr4_2622  cold-shock DNA-binding protein family protein  57.35 
 
 
69 aa  78.2  0.00000000000004  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.00345453 
 
 
-
 
NC_008322  Shewmr7_2689  cold-shock DNA-binding protein family protein  57.35 
 
 
69 aa  78.2  0.00000000000004  Shewanella sp. MR-7  Bacteria  normal  unclonable  0.0000312687 
 
 
-
 
NC_002977  MCA0792  cold shock protein  57.58 
 
 
69 aa  77.8  0.00000000000005  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.000000912185  n/a   
 
 
-
 
NC_008709  Ping_2543  cold-shock DNA-binding domain-containing protein  53.03 
 
 
69 aa  77.8  0.00000000000005  Psychromonas ingrahamii 37  Bacteria  normal  0.754516  normal 
 
 
-
 
NC_007492  Pfl01_1085  cold-shock DNA-binding protein family protein  57.58 
 
 
69 aa  77.4  0.00000000000005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0927739  normal 
 
 
-
 
NC_009656  PSPA7_4220  cold-shock protein  60.32 
 
 
69 aa  77.8  0.00000000000005  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_49410  cold-shock protein  60.32 
 
 
69 aa  77.8  0.00000000000005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.0000191939  normal  0.274128 
 
 
-
 
NC_008740  Maqu_1336  cold-shock DNA-binding domain-containing protein  58.73 
 
 
68 aa  77.4  0.00000000000006  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1500  cold-shock DNA-binding domain-containing protein  58.82 
 
 
69 aa  77.4  0.00000000000006  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3614  cold-shock DNA-binding domain-containing protein  59.02 
 
 
70 aa  77.4  0.00000000000006  Marinomonas sp. MWYL1  Bacteria  normal  0.44614  hitchhiker  0.00284754 
 
 
-
 
NC_009665  Shew185_1464  cold-shock DNA-binding domain-containing protein  58.82 
 
 
69 aa  77.4  0.00000000000006  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2883  cold-shock DNA-binding domain protein  58.82 
 
 
69 aa  77.4  0.00000000000006  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00808952 
 
 
-
 
NC_008740  Maqu_2955  cold-shock DNA-binding domain-containing protein  55.56 
 
 
68 aa  77  0.00000000000008  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1097  cold-shock DNA-binding domain-containing protein  58.46 
 
 
67 aa  77  0.00000000000008  Psychromonas ingrahamii 37  Bacteria  normal  0.24529  normal 
 
 
-
 
NC_008709  Ping_1881  cold-shock DNA-binding domain-containing protein  55.56 
 
 
69 aa  77  0.00000000000008  Psychromonas ingrahamii 37  Bacteria  normal  0.0395263  normal  0.068791 
 
 
-
 
NC_006369  lpl2762  hypothetical protein  54.41 
 
 
71 aa  77  0.00000000000008  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007969  Pcryo_1475  cold-shock DNA-binding domain-containing protein  60.61 
 
 
71 aa  77  0.00000000000008  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_0942  cold-shock DNA-binding protein family protein  60.61 
 
 
71 aa  77  0.00000000000009  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2649  cold-shock DNA-binding domain protein  58.73 
 
 
69 aa  76.6  0.0000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.139093  normal  0.222327 
 
 
-
 
NC_011658  BCAH187_A5356  cold shock protein CspC  57.14 
 
 
67 aa  76.3  0.0000000000001  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5298  cold shock protein CspC  57.14 
 
 
67 aa  76.3  0.0000000000001  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3984  cold shock domain family protein  58.46 
 
 
73 aa  76.6  0.0000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.231003  n/a   
 
 
-
 
NC_007005  Psyr_1403  cold-shock protein, DNA-binding  58.46 
 
 
73 aa  76.6  0.0000000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.861967  normal 
 
 
-
 
NC_012560  Avin_11700  Cold shock domain family protein  57.58 
 
 
70 aa  76.6  0.0000000000001  Azotobacter vinelandii DJ  Bacteria  normal  0.0476912  n/a   
 
 
-
 
NC_007912  Sde_3760  cold-shock DNA-binding protein family protein  51.56 
 
 
69 aa  76.6  0.0000000000001  Saccharophagus degradans 2-40  Bacteria  normal  0.780435  normal 
 
 
-
 
NC_009052  Sbal_1469  cold-shock DNA-binding domain-containing protein  58.82 
 
 
69 aa  76.6  0.0000000000001  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1953  cold-shock DNA-binding domain-containing protein  54.55 
 
 
69 aa  76.6  0.0000000000001  Psychromonas ingrahamii 37  Bacteria  normal  0.0846226  normal  0.0196408 
 
 
-
 
NC_013947  Snas_6113  cold-shock DNA-binding domain-containing protein  53.97 
 
 
66 aa  75.5  0.0000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1261  cold-shock DNA-binding domain-containing protein  53.97 
 
 
156 aa  75.9  0.0000000000002  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.835969 
 
 
-
 
NC_009439  Pmen_3523  cold-shock DNA-binding protein family protein  59.09 
 
 
70 aa  75.9  0.0000000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.32154 
 
 
-
 
NC_011772  BCG9842_B5647  cold shock protein CspC  57.14 
 
 
65 aa  75.5  0.0000000000002  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000135799 
 
 
-
 
NC_008740  Maqu_3612  cold-shock DNA-binding domain-containing protein  56.25 
 
 
68 aa  75.9  0.0000000000002  Marinobacter aquaeolei VT8  Bacteria  decreased coverage  0.00000433441  n/a   
 
 
-
 
NC_005945  BAS5040  cold shock protein CspC  57.14 
 
 
67 aa  75.5  0.0000000000002  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4870  cold shock protein  57.14 
 
 
67 aa  75.5  0.0000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II1034  cold shock-like protein CspG  54.55 
 
 
69 aa  75.5  0.0000000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4885  cold shock protein  57.14 
 
 
67 aa  75.5  0.0000000000002  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5310  cold shock protein CspC  57.14 
 
 
65 aa  75.5  0.0000000000002  Bacillus cereus B4264  Bacteria  normal  0.156889  n/a   
 
 
-
 
NC_007520  Tcr_1057  cold-shock DNA-binding domain-containing protein  52.24 
 
 
68 aa  75.9  0.0000000000002  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2158  cold-shock DNA-binding domain-containing protein  53.97 
 
 
69 aa  75.9  0.0000000000002  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_5424  cold shock protein CspC  57.14 
 
 
65 aa  75.5  0.0000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.491326  n/a   
 
 
-
 
NC_011773  BCAH820_5280  cold shock protein CspC  57.14 
 
 
67 aa  75.5  0.0000000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000584465 
 
 
-
 
NC_010184  BcerKBAB4_4985  cold-shock DNA-binding domain-containing protein  57.14 
 
 
67 aa  75.5  0.0000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_3704  cold-shock DNA-binding domain-containing protein  53.97 
 
 
69 aa  75.1  0.0000000000003  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0559  putative cold-shock protein  51.47 
 
 
69 aa  75.1  0.0000000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_05960  putative cold-shock protein  51.47 
 
 
69 aa  75.1  0.0000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.979044  normal  0.17642 
 
 
-
 
NC_007520  Tcr_1862  cold-shock DNA-binding domain-containing protein  54.84 
 
 
69 aa  74.7  0.0000000000004  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.861564  n/a   
 
 
-
 
NC_009487  SaurJH9_0817  cold-shock DNA-binding domain-containing protein  55.56 
 
 
66 aa  74.3  0.0000000000005  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.000000123312  n/a   
 
 
-
 
NC_009632  SaurJH1_0833  cold-shock protein DNA-binding  55.56 
 
 
66 aa  74.3  0.0000000000005  Staphylococcus aureus subsp. aureus JH1  Bacteria  hitchhiker  0.000000457197  n/a   
 
 
-
 
NC_008709  Ping_0279  cold-shock DNA-binding domain-containing protein  53.97 
 
 
68 aa  74.3  0.0000000000005  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0735  cold-shock DNA-binding domain-containing protein  53.73 
 
 
70 aa  74.3  0.0000000000005  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3598  cold-shock DNA-binding domain-containing protein  58.06 
 
 
66 aa  74.3  0.0000000000005  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.851035  n/a   
 
 
-
 
NC_013947  Snas_4169  cold-shock DNA-binding domain-containing protein  57.81 
 
 
67 aa  74.3  0.0000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.206868  normal  0.740799 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>