More than 300 homologs were found in PanDaTox collection
for query gene Francci3_0818 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_0818  short-chain dehydrogenase/reductase SDR  100 
 
 
278 aa  535  1e-151  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_5718  short-chain dehydrogenase/reductase SDR  78.78 
 
 
276 aa  428  1e-119  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6413  short-chain dehydrogenase/reductase SDR  44.67 
 
 
255 aa  187  2e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0597317 
 
 
-
 
NC_013159  Svir_23050  short-chain dehydrogenase of unknown substrate specificity  43.8 
 
 
246 aa  147  2.0000000000000003e-34  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.223324 
 
 
-
 
NC_010184  BcerKBAB4_3967  short-chain dehydrogenase/reductase SDR  31.08 
 
 
264 aa  130  3e-29  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0321162  n/a   
 
 
-
 
NC_011725  BCB4264_A4244  oxidoreductase, short-chain dehydrogenase/reductase family  30.68 
 
 
264 aa  129  5.0000000000000004e-29  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0992  oxidoreductase, short-chain dehydrogenase/reductase family  30.68 
 
 
264 aa  129  5.0000000000000004e-29  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_4205  short chain dehydrogenase/reductase family oxidoreductase  31.08 
 
 
264 aa  127  1.0000000000000001e-28  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS4042  short chain dehydrogenase/reductase family oxidoreductase  30.68 
 
 
264 aa  127  1.0000000000000001e-28  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4357  short chain dehydrogenase/reductase family oxidoreductase  30.68 
 
 
264 aa  127  1.0000000000000001e-28  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4268  oxidoreductase, short-chain dehydrogenase/reductase family  30.68 
 
 
264 aa  127  1.0000000000000001e-28  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3889  short chain dehydrogenase/reductase family oxidoreductase  30.68 
 
 
264 aa  126  4.0000000000000003e-28  Bacillus cereus E33L  Bacteria  normal  0.674087  n/a   
 
 
-
 
NC_011773  BCAH820_4158  oxidoreductase, short-chain dehydrogenase/reductase family  30.68 
 
 
264 aa  126  4.0000000000000003e-28  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010085  Nmar_0044  short-chain dehydrogenase/reductase SDR  31.89 
 
 
264 aa  126  4.0000000000000003e-28  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_005957  BT9727_3881  oxidoreductase, short-chain dehydrogenase/reductase  30.68 
 
 
264 aa  126  5e-28  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_2831  short-chain dehydrogenase/reductase SDR  30.65 
 
 
264 aa  124  2e-27  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0660  short-chain dehydrogenase/reductase SDR  35.53 
 
 
284 aa  114  1.0000000000000001e-24  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_2968  short-chain dehydrogenase/reductase SDR  40.64 
 
 
272 aa  111  1.0000000000000001e-23  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.118258  normal 
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  38.69 
 
 
262 aa  110  2.0000000000000002e-23  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  38.69 
 
 
262 aa  110  2.0000000000000002e-23  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_4202  short-chain dehydrogenase/reductase SDR  33.84 
 
 
344 aa  110  3e-23  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0177  short-chain dehydrogenase/reductase SDR  39.7 
 
 
262 aa  110  3e-23  Mycobacterium sp. JLS  Bacteria  normal  normal  0.721122 
 
 
-
 
NC_013501  Rmar_1809  short-chain dehydrogenase/reductase SDR  35.44 
 
 
263 aa  109  4.0000000000000004e-23  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_1192  oxidoreductase, short chain dehydrogenase/reductase family  27.42 
 
 
255 aa  108  8.000000000000001e-23  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3521  short-chain dehydrogenase/reductase SDR  37.5 
 
 
268 aa  108  9.000000000000001e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4285  short chain dehydrogenase/reductase family oxidoreductase  41.49 
 
 
249 aa  108  1e-22  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5585  short-chain dehydrogenase/reductase SDR  35.98 
 
 
265 aa  106  4e-22  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.892025  normal  0.853623 
 
 
-
 
NC_008261  CPF_2906  short chain dehydrogenase/reductase family oxidoreductase  35.9 
 
 
257 aa  106  4e-22  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0195  short-chain dehydrogenase/reductase SDR  34.78 
 
 
267 aa  105  7e-22  Sinorhizobium medicae WSM419  Bacteria  normal  0.802669  normal 
 
 
-
 
NC_013922  Nmag_1126  short-chain dehydrogenase/reductase SDR  37.57 
 
 
338 aa  105  8e-22  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0353  short-chain dehydrogenase/reductase SDR  33.2 
 
 
262 aa  105  1e-21  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008530  LGAS_0875  Short-chain dehydrogenase of various substrate specificities  31.43 
 
 
264 aa  105  1e-21  Lactobacillus gasseri ATCC 33323  Bacteria  normal  hitchhiker  0.00123287 
 
 
-
 
NC_007413  Ava_2596  Short-chain dehydrogenase/reductase SDR  30.8 
 
 
287 aa  103  3e-21  Anabaena variabilis ATCC 29413  Bacteria  normal  0.7335  normal 
 
 
-
 
NC_013744  Htur_3849  short-chain dehydrogenase/reductase SDR  35.68 
 
 
314 aa  103  3e-21  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0687851  n/a   
 
 
-
 
NC_008255  CHU_2064  oxidoreductase ( short-chain dehydrogenase)  31.9 
 
 
264 aa  103  3e-21  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.694867  normal  0.0846624 
 
 
-
 
NC_010117  COXBURSA331_A1015  short chain dehydrogenase/reductase family oxidoreductase  30.4 
 
 
263 aa  103  4e-21  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2271  short-chain dehydrogenase/reductase SDR  30.16 
 
 
262 aa  103  4e-21  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1067  short-chain dehydrogenase/reductase SDR  35.29 
 
 
258 aa  103  4e-21  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  36.36 
 
 
263 aa  102  5e-21  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_009943  Dole_2194  short-chain dehydrogenase/reductase SDR  31.63 
 
 
280 aa  102  6e-21  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0155651  n/a   
 
 
-
 
NC_009727  CBUD_1145  short chain dehydrogenase  30.4 
 
 
321 aa  102  8e-21  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2462  short chain dehydrogenase  37.7 
 
 
254 aa  102  8e-21  Sinorhizobium medicae WSM419  Bacteria  normal  0.131471  normal 
 
 
-
 
NC_010831  Cphamn1_1031  short-chain dehydrogenase/reductase SDR  37.57 
 
 
233 aa  100  2e-20  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_0350  short chain dehydrogenase/reductase family oxidoreductase  40 
 
 
259 aa  101  2e-20  Chlorobium chlorochromatii CaD3  Bacteria  hitchhiker  0.000771311  n/a   
 
 
-
 
NC_009484  Acry_1526  3-oxoacyl-(acyl-carrier-protein) reductase  39.34 
 
 
249 aa  101  2e-20  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_2629  short-chain dehydrogenase/reductase SDR  34.76 
 
 
317 aa  101  2e-20  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_007413  Ava_1572  Short-chain dehydrogenase/reductase SDR  34.72 
 
 
263 aa  100  3e-20  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.577459 
 
 
-
 
NC_009767  Rcas_3908  short-chain dehydrogenase/reductase SDR  35.64 
 
 
272 aa  100  3e-20  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.106718  normal  0.186536 
 
 
-
 
NC_008148  Rxyl_0016  short-chain dehydrogenase/reductase SDR  37.07 
 
 
260 aa  100  3e-20  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2585  short chain dehydrogenase/reductase family oxidoreductase  33.51 
 
 
257 aa  100  3e-20  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_3453  short-chain dehydrogenase/reductase SDR  31.94 
 
 
267 aa  100  3e-20  Trichodesmium erythraeum IMS101  Bacteria  normal  0.282255  normal 
 
 
-
 
NC_010831  Cphamn1_0312  short-chain dehydrogenase/reductase SDR  32.57 
 
 
261 aa  99.4  5e-20  Chlorobium phaeobacteroides BS1  Bacteria  hitchhiker  0.0000113464  decreased coverage  0.000120518 
 
 
-
 
NC_014212  Mesil_1171  short-chain dehydrogenase/reductase SDR  33.86 
 
 
238 aa  99.8  5e-20  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.399765 
 
 
-
 
NC_012850  Rleg_4625  short chain dehydrogenase  35.2 
 
 
249 aa  99.4  6e-20  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.402352  normal  0.18483 
 
 
-
 
NC_011884  Cyan7425_0445  short-chain dehydrogenase/reductase SDR  37.37 
 
 
267 aa  99  7e-20  Cyanothece sp. PCC 7425  Bacteria  normal  0.810235  normal  0.221701 
 
 
-
 
NC_008698  Tpen_1770  short-chain dehydrogenase/reductase SDR  36.63 
 
 
234 aa  99  7e-20  Thermofilum pendens Hrk 5  Archaea  normal  0.0933094  n/a   
 
 
-
 
CP001637  EcDH1_2554  3-oxoacyl-(acyl-carrier-protein) reductase  31.43 
 
 
244 aa  99  8e-20  Escherichia coli DH1  Bacteria  unclonable  9.3114e-16  n/a   
 
 
-
 
NC_010658  SbBS512_E2231  3-ketoacyl-(acyl-carrier-protein) reductase  31.43 
 
 
244 aa  99  8e-20  Shigella boydii CDC 3083-94  Bacteria  unclonable  0.00000000000000399569  n/a   
 
 
-
 
NC_011353  ECH74115_1472  3-ketoacyl-(acyl-carrier-protein) reductase  32.62 
 
 
244 aa  99  8e-20  Escherichia coli O157:H7 str. EC4115  Bacteria  unclonable  0.00000000346671  hitchhiker  0.00000000000000508287 
 
 
-
 
NC_010468  EcolC_2508  3-ketoacyl-(acyl-carrier-protein) reductase  31.43 
 
 
244 aa  99  8e-20  Escherichia coli ATCC 8739  Bacteria  unclonable  0.0000000339194  hitchhiker  0.00000190522 
 
 
-
 
NC_010498  EcSMS35_2034  3-ketoacyl-(acyl-carrier-protein) reductase  31.43 
 
 
244 aa  99  8e-20  Escherichia coli SMS-3-5  Bacteria  unclonable  0.000000000773418  decreased coverage  0.000000561813 
 
 
-
 
NC_009801  EcE24377A_1214  3-ketoacyl-(acyl-carrier-protein) reductase  31.43 
 
 
244 aa  99  8e-20  Escherichia coli E24377A  Bacteria  hitchhiker  0.0000000000193485  n/a   
 
 
-
 
NC_009800  EcHS_A1215  3-ketoacyl-(acyl-carrier-protein) reductase  31.43 
 
 
244 aa  99  8e-20  Escherichia coli HS  Bacteria  unclonable  7.480399999999999e-22  n/a   
 
 
-
 
CP001509  ECD_01089  3-oxoacyl-[acyl-carrier-protein] reductase  31.43 
 
 
244 aa  98.6  9e-20  Escherichia coli BL21(DE3)  Bacteria  unclonable  0.00000046254  n/a   
 
 
-
 
NC_012892  B21_01097  hypothetical protein  31.43 
 
 
244 aa  98.6  9e-20  Escherichia coli BL21  Bacteria  unclonable  0.000000400605  n/a   
 
 
-
 
NC_007948  Bpro_3168  short chain dehydrogenase  39.22 
 
 
270 aa  98.6  9e-20  Polaromonas sp. JS666  Bacteria  normal  0.273274  normal  0.685188 
 
 
-
 
NC_013132  Cpin_5008  short-chain dehydrogenase/reductase SDR  33 
 
 
298 aa  98.6  9e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0468951  hitchhiker  0.00252787 
 
 
-
 
NC_011884  Cyan7425_3307  short-chain dehydrogenase/reductase SDR  36.4 
 
 
275 aa  97.8  1e-19  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010085  Nmar_1321  short-chain dehydrogenase/reductase SDR  28.63 
 
 
276 aa  98.2  1e-19  Nitrosopumilus maritimus SCM1  Archaea  n/a    decreased coverage  0.00000000000224332 
 
 
-
 
NC_008686  Pden_1769  3-oxoacyl-(acyl-carrier-protein) reductase  35.15 
 
 
245 aa  98.2  1e-19  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.485655 
 
 
-
 
NC_013730  Slin_0208  short-chain dehydrogenase/reductase SDR  31.58 
 
 
263 aa  98.6  1e-19  Spirosoma linguale DSM 74  Bacteria  normal  0.196422  normal 
 
 
-
 
NC_011738  PCC7424_5709  short-chain dehydrogenase/reductase SDR  29.96 
 
 
347 aa  97.4  2e-19  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009664  Krad_2500  short-chain dehydrogenase/reductase SDR  37.76 
 
 
257 aa  97.4  2e-19  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_3911  short-chain dehydrogenase/reductase SDR  34.54 
 
 
267 aa  97.8  2e-19  'Nostoc azollae' 0708  Bacteria  normal  0.322734  n/a   
 
 
-
 
NC_009523  RoseRS_3145  short-chain dehydrogenase/reductase SDR  35.48 
 
 
535 aa  97.4  2e-19  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.61705 
 
 
-
 
NC_008148  Rxyl_3000  short-chain dehydrogenase/reductase SDR  42.31 
 
 
241 aa  97.4  2e-19  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3901  short-chain dehydrogenase/reductase SDR  36.7 
 
 
280 aa  97.8  2e-19  Chelativorans sp. BNC1  Bacteria  normal  0.962145  n/a   
 
 
-
 
NC_009667  Oant_1734  short chain dehydrogenase  33.03 
 
 
249 aa  97.8  2e-19  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.747593  n/a   
 
 
-
 
NC_010803  Clim_0189  short-chain dehydrogenase/reductase SDR  33.9 
 
 
267 aa  97.1  3e-19  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.00000709968  n/a   
 
 
-
 
NC_014158  Tpau_3993  short-chain dehydrogenase/reductase SDR  37.77 
 
 
268 aa  96.3  4e-19  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.468783  n/a   
 
 
-
 
NC_013525  Tter_0451  short-chain dehydrogenase/reductase SDR  28.09 
 
 
339 aa  96.3  5e-19  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008228  Patl_0906  short-chain dehydrogenase/reductase SDR  29.02 
 
 
273 aa  96.3  5e-19  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.127379  n/a   
 
 
-
 
NC_009952  Dshi_0553  short-chain dehydrogenase/reductase SDR  31.71 
 
 
255 aa  95.9  6e-19  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3370  short-chain dehydrogenase/reductase SDR  29.41 
 
 
285 aa  95.9  6e-19  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.976299 
 
 
-
 
NC_009441  Fjoh_5037  3-ketoacyl-(acyl-carrier-protein) reductase  31.25 
 
 
238 aa  96.3  6e-19  Flavobacterium johnsoniae UW101  Bacteria  normal  0.293143  n/a   
 
 
-
 
NC_013162  Coch_0498  short-chain dehydrogenase/reductase SDR  32.35 
 
 
273 aa  95.9  7e-19  Capnocytophaga ochracea DSM 7271  Bacteria  hitchhiker  0.000000406118  n/a   
 
 
-
 
NC_013204  Elen_0666  short-chain dehydrogenase/reductase SDR  36.17 
 
 
343 aa  95.9  7e-19  Eggerthella lenta DSM 2243  Bacteria  normal  0.019294  hitchhiker  0.000464867 
 
 
-
 
NC_009523  RoseRS_3239  short-chain dehydrogenase/reductase SDR  35.75 
 
 
258 aa  95.9  7e-19  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.703839 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  38.71 
 
 
258 aa  95.9  7e-19  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  38.78 
 
 
263 aa  95.5  8e-19  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_013517  Sterm_1096  short-chain dehydrogenase/reductase SDR  35.14 
 
 
256 aa  95.5  8e-19  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2014  short-chain dehydrogenase/reductase SDR  36.87 
 
 
268 aa  95.5  8e-19  Gordonia bronchialis DSM 43247  Bacteria  normal  0.700313  n/a   
 
 
-
 
NC_007643  Rru_A0273  3-oxoacyl-[acyl-carrier-protein] reductase  33.82 
 
 
242 aa  95.5  9e-19  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0655  Short-chain dehydrogenase of various substrate specificities  29.8 
 
 
233 aa  95.5  9e-19  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_1044  short-chain dehydrogenase/reductase SDR  38.83 
 
 
226 aa  95.5  9e-19  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012029  Hlac_0964  short-chain dehydrogenase/reductase SDR  36.22 
 
 
306 aa  95.1  1e-18  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal 
 
 
-
 
NC_010803  Clim_1508  short-chain dehydrogenase/reductase SDR  37.11 
 
 
233 aa  95.1  1e-18  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_3621  short-chain dehydrogenase  35.79 
 
 
258 aa  95.1  1e-18  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_3561  short chain dehydrogenase  34.58 
 
 
276 aa  95.1  1e-18  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_3324  short-chain dehydrogenase/reductase SDR  34.69 
 
 
269 aa  94.7  1e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.377978 
 
 
-
 
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