More than 300 homologs were found in PanDaTox collection
for query gene Vapar_3685 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_3685  binding-protein-dependent transport systems inner membrane component  100 
 
 
283 aa  567  1e-161  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1241  binding-protein-dependent transport systems inner membrane component  91.52 
 
 
283 aa  525  1e-148  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_3527  binding-protein-dependent transport systems inner membrane component  89.4 
 
 
283 aa  511  1e-144  Polaromonas sp. JS666  Bacteria  normal  0.16619  normal  0.170584 
 
 
-
 
NC_009485  BBta_6834  putative ABC transporter permease protein  77.74 
 
 
283 aa  456  1e-127  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.176531  normal 
 
 
-
 
NC_010511  M446_2926  binding-protein-dependent transport systems inner membrane component  80.51 
 
 
304 aa  449  1e-125  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3341  putative sugar ABC transporter, permease protein  37.6 
 
 
292 aa  166  2.9999999999999998e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.22127  normal  0.118781 
 
 
-
 
NC_007005  Psyr_0760  binding-protein dependent transport system inner membrane protein  37.17 
 
 
280 aa  160  3e-38  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0312496  normal  0.789995 
 
 
-
 
NC_014165  Tbis_1884  binding-protein-dependent transporter inner membrane component  35.66 
 
 
278 aa  158  8e-38  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.683331 
 
 
-
 
NC_004578  PSPTO_0887  sugar ABC transporter, permease protein  36.06 
 
 
280 aa  157  2e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.453961  n/a   
 
 
-
 
NC_009953  Sare_0749  binding-protein-dependent transport systems inner membrane component  35.21 
 
 
306 aa  152  7e-36  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00175385 
 
 
-
 
NC_009380  Strop_0805  binding-protein-dependent transport systems inner membrane component  34.96 
 
 
311 aa  152  7e-36  Salinispora tropica CNB-440  Bacteria  normal  0.736814  normal 
 
 
-
 
NC_007802  Jann_3555  binding-protein-dependent transport systems inner membrane component  36.82 
 
 
279 aa  151  1e-35  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_11600  carbohydrate ABC transporter membrane protein  36.4 
 
 
283 aa  150  2e-35  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0306  sugar ABC transporter, permease protein  34.6 
 
 
275 aa  149  6e-35  Brucella suis 1330  Bacteria  normal  0.147324  n/a   
 
 
-
 
NC_009636  Smed_0188  binding-protein-dependent transport systems inner membrane component  36.75 
 
 
277 aa  149  7e-35  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_4088  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
275 aa  148  1.0000000000000001e-34  Jannaschia sp. CCS1  Bacteria  normal  normal  0.350213 
 
 
-
 
NC_010498  EcSMS35_1810  putative sugar ABC transporter, permease protein  34.47 
 
 
280 aa  148  1.0000000000000001e-34  Escherichia coli SMS-3-5  Bacteria  normal  0.817708  normal 
 
 
-
 
NC_008699  Noca_0871  binding-protein-dependent transport systems inner membrane component  35.98 
 
 
284 aa  147  2.0000000000000003e-34  Nocardioides sp. JS614  Bacteria  normal  0.288507  n/a   
 
 
-
 
NC_011369  Rleg2_3667  binding-protein-dependent transport systems inner membrane component  33.71 
 
 
296 aa  147  2.0000000000000003e-34  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_0644  binding-protein-dependent transport systems inner membrane component  34.15 
 
 
283 aa  146  3e-34  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000450076  n/a   
 
 
-
 
NC_010483  TRQ2_0669  binding-protein-dependent transport systems inner membrane component  34.15 
 
 
283 aa  147  3e-34  Thermotoga sp. RQ2  Bacteria  normal  0.586722  n/a   
 
 
-
 
NC_012848  Rleg_4865  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
296 aa  147  3e-34  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.174421 
 
 
-
 
NC_009436  Ent638_2162  binding-protein-dependent transport systems inner membrane component  35.98 
 
 
280 aa  146  4.0000000000000006e-34  Enterobacter sp. 638  Bacteria  normal  normal  0.250115 
 
 
-
 
NC_012791  Vapar_3350  binding-protein-dependent transport systems inner membrane component  36.52 
 
 
274 aa  144  1e-33  Variovorax paradoxus S110  Bacteria  normal  0.610127  n/a   
 
 
-
 
NC_013131  Caci_2110  binding-protein-dependent transport systems inner membrane component  38.73 
 
 
316 aa  144  1e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.523457 
 
 
-
 
NC_008687  Pden_4440  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
277 aa  144  1e-33  Paracoccus denitrificans PD1222  Bacteria  normal  0.062682  normal 
 
 
-
 
NC_009668  Oant_2942  binding-protein-dependent transport systems inner membrane component  33.84 
 
 
275 aa  144  1e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.667129  n/a   
 
 
-
 
NC_011353  ECH74115_1957  putative sugar ABC transporter, permease protein  34.47 
 
 
280 aa  143  2e-33  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.605299  normal  0.820662 
 
 
-
 
NC_010505  Mrad2831_2890  binding-protein-dependent transport systems inner membrane component  35.56 
 
 
312 aa  144  2e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal  0.323454 
 
 
-
 
NC_008541  Arth_3685  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
299 aa  143  3e-33  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0625  binding-protein-dependent transport systems inner membrane component  32.7 
 
 
298 aa  143  3e-33  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009667  Oant_0352  binding-protein-dependent transport systems inner membrane component  32.86 
 
 
277 aa  143  3e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0399  binding-protein-dependent transport systems inner membrane component  32.36 
 
 
286 aa  143  4e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009952  Dshi_3142  sugar ABC transporter  34.78 
 
 
275 aa  143  4e-33  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.367291  normal 
 
 
-
 
NC_014158  Tpau_1201  binding-protein-dependent transport systems inner membrane component  32.95 
 
 
277 aa  142  5e-33  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01289  predicted sugar transporter subunit: membrane component of ABC superfamily  34.47 
 
 
280 aa  142  7e-33  Escherichia coli BL21(DE3)  Bacteria  normal  0.553016  n/a   
 
 
-
 
CP001637  EcDH1_2334  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
280 aa  142  7e-33  Escherichia coli DH1  Bacteria  normal  0.240108  n/a   
 
 
-
 
NC_012892  B21_01300  hypothetical protein  34.47 
 
 
280 aa  142  7e-33  Escherichia coli BL21  Bacteria  normal  0.534807  n/a   
 
 
-
 
NC_009800  EcHS_A1427  putative sugar ABC transporter, permease protein  34.47 
 
 
280 aa  142  7e-33  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2313  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
280 aa  142  7e-33  Escherichia coli ATCC 8739  Bacteria  normal  0.676844  normal 
 
 
-
 
NC_009801  EcE24377A_1522  putative sugar ABC transporter, permease protein  34.47 
 
 
280 aa  142  7e-33  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4646  binding-protein-dependent transport systems inner membrane component  33.94 
 
 
273 aa  141  9e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00194673 
 
 
-
 
NC_010511  M446_0820  binding-protein-dependent transport systems inner membrane component  35.45 
 
 
291 aa  142  9e-33  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1415  binding-protein-dependent transport systems inner membrane component  34.83 
 
 
292 aa  141  9.999999999999999e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3334  binding-protein-dependent transport systems inner membrane component  32.21 
 
 
299 aa  141  9.999999999999999e-33  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_19870  binding-protein-dependent transport systems inner membrane component  32.21 
 
 
285 aa  140  3e-32  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5669  binding-protein-dependent transport systems inner membrane component  32.43 
 
 
275 aa  140  3e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_06510  carbohydrate ABC transporter membrane protein  31.88 
 
 
282 aa  139  3.9999999999999997e-32  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2192  putative sugar ABC transporter, permease protein  32.58 
 
 
283 aa  139  4.999999999999999e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_01830  carbohydrate ABC transporter membrane protein  35.32 
 
 
272 aa  139  4.999999999999999e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_3589  binding-protein-dependent transport systems inner membrane component  35 
 
 
276 aa  139  4.999999999999999e-32  Sinorhizobium medicae WSM419  Bacteria  normal  0.577285  normal 
 
 
-
 
NC_013093  Amir_0350  binding-protein-dependent transport systems inner membrane component  35.85 
 
 
297 aa  139  7e-32  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_4134  ABC sugar transporter, inner membrane subunit  32.77 
 
 
295 aa  137  1e-31  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0395  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
277 aa  138  1e-31  Thermoanaerobacter sp. X514  Bacteria  normal  0.230637  n/a   
 
 
-
 
NC_011145  AnaeK_4265  binding-protein-dependent transport systems inner membrane component  32.77 
 
 
293 aa  137  1e-31  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_3810  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
276 aa  138  1e-31  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1881  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
277 aa  137  2e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.31192  normal  0.345507 
 
 
-
 
NC_009718  Fnod_0448  binding-protein-dependent transport systems inner membrane component  32.71 
 
 
281 aa  137  2e-31  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_4287  binding-protein-dependent transport systems inner membrane component  32.77 
 
 
293 aa  137  3.0000000000000003e-31  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_008243  Meso_4515  binding-protein-dependent transport systems inner membrane component  34.62 
 
 
275 aa  137  3.0000000000000003e-31  Chelativorans sp. BNC1  Bacteria  normal  0.275064  n/a   
 
 
-
 
NC_009664  Krad_4017  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
313 aa  136  3.0000000000000003e-31  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0409938  normal  0.173322 
 
 
-
 
NC_008541  Arth_0415  binding-protein-dependent transport systems inner membrane component  32.32 
 
 
298 aa  137  3.0000000000000003e-31  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2542  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
275 aa  136  3.0000000000000003e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.607728  normal 
 
 
-
 
NC_012848  Rleg_4718  binding-protein-dependent transport systems inner membrane component  32.82 
 
 
280 aa  136  3.0000000000000003e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_02950  carbohydrate ABC transporter membrane protein  34.8 
 
 
297 aa  137  3.0000000000000003e-31  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3853  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
275 aa  136  4e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0623628 
 
 
-
 
NC_013947  Snas_1043  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
273 aa  136  4e-31  Stackebrandtia nassauensis DSM 44728  Bacteria  decreased coverage  0.00118636  normal  0.712976 
 
 
-
 
NC_011368  Rleg2_4693  binding-protein-dependent transport systems inner membrane component  32.43 
 
 
280 aa  136  5e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.595578 
 
 
-
 
NC_007925  RPC_3644  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
306 aa  135  9e-31  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.433095 
 
 
-
 
NC_007952  Bxe_B0078  ABC sugar transporter, inner membrane subunit  34.88 
 
 
293 aa  135  9e-31  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_3327  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
278 aa  135  9e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013172  Bfae_25430  carbohydrate ABC transporter membrane protein  33.1 
 
 
275 aa  134  9.999999999999999e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0542318  n/a   
 
 
-
 
NC_009050  Rsph17029_3407  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
277 aa  134  9.999999999999999e-31  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.353789  normal  0.790416 
 
 
-
 
NC_013093  Amir_0809  binding-protein-dependent transport systems inner membrane component  31.5 
 
 
281 aa  134  9.999999999999999e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3672  ABC sugar transporter, inner membrane subunit  33.21 
 
 
277 aa  134  1.9999999999999998e-30  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.191343  n/a   
 
 
-
 
NC_007958  RPD_2908  binding-protein-dependent transport systems inner membrane component  30.15 
 
 
303 aa  134  1.9999999999999998e-30  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.265009  normal  0.0499964 
 
 
-
 
NC_010483  TRQ2_0972  binding-protein-dependent transport systems inner membrane component  31.32 
 
 
278 aa  134  1.9999999999999998e-30  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00136246  n/a   
 
 
-
 
NC_009486  Tpet_0956  binding-protein-dependent transport systems inner membrane component  31.32 
 
 
278 aa  134  1.9999999999999998e-30  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_3981  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
278 aa  133  3e-30  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4055  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
278 aa  133  3e-30  Mycobacterium sp. KMS  Bacteria  normal  normal  0.898469 
 
 
-
 
NC_009485  BBta_3556  putative ABC transporter permease protein  32.84 
 
 
302 aa  133  3e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3144  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
283 aa  133  3.9999999999999996e-30  Haliangium ochraceum DSM 14365  Bacteria  normal  0.657095  normal  0.345018 
 
 
-
 
NC_011368  Rleg2_5493  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
276 aa  133  3.9999999999999996e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.173525 
 
 
-
 
NC_007963  Csal_0260  binding-protein-dependent transport systems inner membrane component  33.59 
 
 
280 aa  133  3.9999999999999996e-30  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_4878  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
283 aa  133  3.9999999999999996e-30  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0498  binding-protein-dependent transport systems inner membrane component  31.95 
 
 
307 aa  133  3.9999999999999996e-30  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3287  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
283 aa  133  3.9999999999999996e-30  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3995  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
278 aa  132  3.9999999999999996e-30  Mycobacterium sp. JLS  Bacteria  normal  0.273063  normal  0.368954 
 
 
-
 
NC_014165  Tbis_1103  binding-protein-dependent transporter inner membrane component  34.08 
 
 
283 aa  132  6e-30  Thermobispora bispora DSM 43833  Bacteria  normal  0.216355  normal  0.105298 
 
 
-
 
NC_008025  Dgeo_0589  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
283 aa  132  6.999999999999999e-30  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.288724  normal 
 
 
-
 
NC_009636  Smed_2422  binding-protein-dependent transport systems inner membrane component  29.89 
 
 
277 aa  132  6.999999999999999e-30  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.161716 
 
 
-
 
NC_013093  Amir_0401  binding-protein-dependent transport systems inner membrane component  36.19 
 
 
273 aa  132  7.999999999999999e-30  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3320  binding-protein-dependent transport systems inner membrane component  33.08 
 
 
306 aa  132  9e-30  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.516891  normal 
 
 
-
 
NC_012034  Athe_2577  binding-protein-dependent transport systems inner membrane component  30.88 
 
 
289 aa  131  1.0000000000000001e-29  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000123664  n/a   
 
 
-
 
NC_007778  RPB_2099  binding-protein dependent transport system inner membrane protein  33.08 
 
 
307 aa  131  1.0000000000000001e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.642563  decreased coverage  0.0000998416 
 
 
-
 
NC_007778  RPB_2548  binding-protein dependent transport system inner membrane protein  28.73 
 
 
304 aa  131  1.0000000000000001e-29  Rhodopseudomonas palustris HaA2  Bacteria  decreased coverage  0.00362276  normal 
 
 
-
 
NC_008148  Rxyl_1989  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
284 aa  131  1.0000000000000001e-29  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.951557  n/a   
 
 
-
 
NC_009654  Mmwyl1_0023  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
277 aa  131  1.0000000000000001e-29  Marinomonas sp. MWYL1  Bacteria  normal  0.275556  normal  0.424969 
 
 
-
 
NC_011004  Rpal_3958  binding-protein-dependent transport systems inner membrane component  33.08 
 
 
308 aa  130  2.0000000000000002e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.809225  n/a   
 
 
-
 
NC_009620  Smed_4330  binding-protein-dependent transport systems inner membrane component  31.68 
 
 
299 aa  130  2.0000000000000002e-29  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0255144 
 
 
-
 
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