More than 300 homologs were found in PanDaTox collection
for query gene Smed_4330 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009620  Smed_4330  binding-protein-dependent transport systems inner membrane component  100 
 
 
299 aa  595  1e-169  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0255144 
 
 
-
 
NC_012848  Rleg_5335  binding-protein-dependent transport systems inner membrane component  89.63 
 
 
299 aa  542  1e-153  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.494114 
 
 
-
 
NC_011366  Rleg2_5715  binding-protein-dependent transport systems inner membrane component  90 
 
 
311 aa  540  9.999999999999999e-153  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.578248 
 
 
-
 
NC_007948  Bpro_1260  binding-protein-dependent transport systems inner membrane component  72.7 
 
 
291 aa  437  9.999999999999999e-123  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2099  binding-protein dependent transport system inner membrane protein  67.56 
 
 
307 aa  418  1e-116  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.642563  decreased coverage  0.0000998416 
 
 
-
 
NC_007958  RPD_3320  binding-protein-dependent transport systems inner membrane component  68.12 
 
 
306 aa  419  1e-116  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.516891  normal 
 
 
-
 
NC_010505  Mrad2831_2890  binding-protein-dependent transport systems inner membrane component  69.18 
 
 
312 aa  419  1e-116  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal  0.323454 
 
 
-
 
NC_010511  M446_0820  binding-protein-dependent transport systems inner membrane component  70.49 
 
 
291 aa  418  1e-116  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3556  putative ABC transporter permease protein  69.34 
 
 
302 aa  418  1e-116  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1415  binding-protein-dependent transport systems inner membrane component  69.31 
 
 
292 aa  417  9.999999999999999e-116  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3644  binding-protein-dependent transport systems inner membrane component  69.15 
 
 
306 aa  413  1e-114  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.433095 
 
 
-
 
NC_011004  Rpal_3958  binding-protein-dependent transport systems inner membrane component  70.38 
 
 
308 aa  411  1e-114  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.809225  n/a   
 
 
-
 
NC_009720  Xaut_0498  binding-protein-dependent transport systems inner membrane component  88.2 
 
 
219 aa  293  3e-78  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_3316  binding-protein-dependent transport systems inner membrane component  46.93 
 
 
281 aa  254  1.0000000000000001e-66  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3122  ABC sugar transporter, inner membrane subunit  48.11 
 
 
281 aa  254  2.0000000000000002e-66  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3230  binding-protein-dependent transport systems inner membrane component  46.93 
 
 
281 aa  253  3e-66  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1664  binding-protein-dependent transport systems inner membrane component  46.81 
 
 
281 aa  238  1e-61  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.150444  normal 
 
 
-
 
NC_007964  Nham_1209  binding-protein-dependent transport systems inner membrane component  47.89 
 
 
284 aa  236  2e-61  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0008  binding-protein-dependent transport systems inner membrane component  43.37 
 
 
295 aa  226  3e-58  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_2908  binding-protein-dependent transport systems inner membrane component  41.03 
 
 
303 aa  213  1.9999999999999998e-54  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.265009  normal  0.0499964 
 
 
-
 
NC_009485  BBta_4119  ABC transporter permease protein  42.86 
 
 
303 aa  214  1.9999999999999998e-54  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0396939  normal  0.542053 
 
 
-
 
NC_007778  RPB_2548  binding-protein dependent transport system inner membrane protein  38.56 
 
 
304 aa  213  3.9999999999999995e-54  Rhodopseudomonas palustris HaA2  Bacteria  decreased coverage  0.00362276  normal 
 
 
-
 
NC_008243  Meso_4515  binding-protein-dependent transport systems inner membrane component  36.94 
 
 
275 aa  183  3e-45  Chelativorans sp. BNC1  Bacteria  normal  0.275064  n/a   
 
 
-
 
NC_009620  Smed_3589  binding-protein-dependent transport systems inner membrane component  36.65 
 
 
276 aa  182  6e-45  Sinorhizobium medicae WSM419  Bacteria  normal  0.577285  normal 
 
 
-
 
NC_009636  Smed_0188  binding-protein-dependent transport systems inner membrane component  37.18 
 
 
277 aa  173  1.9999999999999998e-42  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_0500  putative sugar uptake ABC transporter permease protein  73.08 
 
 
146 aa  173  2.9999999999999996e-42  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1881  binding-protein-dependent transport systems inner membrane component  38.52 
 
 
277 aa  172  7.999999999999999e-42  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.31192  normal  0.345507 
 
 
-
 
NC_004311  BRA0306  sugar ABC transporter, permease protein  39.11 
 
 
275 aa  165  8e-40  Brucella suis 1330  Bacteria  normal  0.147324  n/a   
 
 
-
 
NC_013525  Tter_0399  binding-protein-dependent transport systems inner membrane component  36.23 
 
 
286 aa  164  2.0000000000000002e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009668  Oant_2942  binding-protein-dependent transport systems inner membrane component  38.38 
 
 
275 aa  162  7e-39  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.667129  n/a   
 
 
-
 
NC_013521  Sked_02950  carbohydrate ABC transporter membrane protein  33.98 
 
 
297 aa  162  8.000000000000001e-39  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2088  binding-protein-dependent transport systems inner membrane component  38.1 
 
 
282 aa  162  8.000000000000001e-39  Meiothermus ruber DSM 1279  Bacteria  hitchhiker  0.00655693  normal  0.897951 
 
 
-
 
NC_013411  GYMC61_2957  binding-protein-dependent transport systems inner membrane component  40.59 
 
 
275 aa  158  1e-37  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011899  Hore_19870  binding-protein-dependent transport systems inner membrane component  35.25 
 
 
285 aa  156  4e-37  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1682  binding-protein-dependent transport systems inner membrane component  32.71 
 
 
275 aa  155  6e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.299262  normal 
 
 
-
 
NC_008699  Noca_1418  binding-protein-dependent transport systems inner membrane component  33.83 
 
 
276 aa  155  7e-37  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4398  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
292 aa  155  8e-37  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.445244 
 
 
-
 
NC_012848  Rleg_5211  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
281 aa  155  9e-37  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.610418 
 
 
-
 
NC_007802  Jann_3555  binding-protein-dependent transport systems inner membrane component  33.86 
 
 
279 aa  154  1e-36  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_0942  binding-protein-dependent transport systems inner membrane component  32.27 
 
 
280 aa  154  1e-36  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.41482 
 
 
-
 
NC_010320  Teth514_0395  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
277 aa  154  2e-36  Thermoanaerobacter sp. X514  Bacteria  normal  0.230637  n/a   
 
 
-
 
NC_011368  Rleg2_5474  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
280 aa  153  2.9999999999999998e-36  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.9066  normal  0.435889 
 
 
-
 
NC_004578  PSPTO_0887  sugar ABC transporter, permease protein  32.51 
 
 
280 aa  153  4e-36  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.453961  n/a   
 
 
-
 
NC_007005  Psyr_0760  binding-protein dependent transport system inner membrane protein  33.98 
 
 
280 aa  153  4e-36  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0312496  normal  0.789995 
 
 
-
 
NC_010003  Pmob_0029  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
283 aa  152  8e-36  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000511748  n/a   
 
 
-
 
NC_011899  Hore_20850  binding-protein-dependent transport systems inner membrane component  35.27 
 
 
288 aa  152  8.999999999999999e-36  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1884  binding-protein-dependent transporter inner membrane component  30.96 
 
 
278 aa  150  2e-35  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.683331 
 
 
-
 
NC_009616  Tmel_1818  binding-protein-dependent transport systems inner membrane component  35.34 
 
 
279 aa  150  2e-35  Thermosipho melanesiensis BI429  Bacteria  normal  0.675174  n/a   
 
 
-
 
NC_011899  Hore_20450  binding-protein-dependent transport systems inner membrane component  33.94 
 
 
277 aa  149  4e-35  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000244229  n/a   
 
 
-
 
NC_011145  AnaeK_4265  binding-protein-dependent transport systems inner membrane component  40.48 
 
 
293 aa  149  4e-35  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0448  binding-protein-dependent transport systems inner membrane component  36.09 
 
 
277 aa  149  4e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_4287  binding-protein-dependent transport systems inner membrane component  40.48 
 
 
293 aa  149  5e-35  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_012853  Rleg_5696  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
283 aa  149  6e-35  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.697019  normal  0.0828938 
 
 
-
 
NC_013595  Sros_7723  binding-protein-dependent transport systems inner membrane component  33.08 
 
 
279 aa  149  6e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5095  binding-protein-dependent transport systems inner membrane component  37.33 
 
 
273 aa  149  7e-35  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.336394 
 
 
-
 
NC_013595  Sros_2192  putative sugar ABC transporter, permease protein  34.83 
 
 
283 aa  149  7e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007494  RSP_3672  ABC sugar transporter, inner membrane subunit  32.25 
 
 
277 aa  148  1.0000000000000001e-34  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.191343  n/a   
 
 
-
 
NC_012848  Rleg_4865  binding-protein-dependent transport systems inner membrane component  35.32 
 
 
296 aa  148  1.0000000000000001e-34  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.174421 
 
 
-
 
NC_013172  Bfae_25430  carbohydrate ABC transporter membrane protein  37.5 
 
 
275 aa  148  1.0000000000000001e-34  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0542318  n/a   
 
 
-
 
NC_013595  Sros_3341  putative sugar ABC transporter, permease protein  31.7 
 
 
292 aa  147  1.0000000000000001e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.22127  normal  0.118781 
 
 
-
 
NC_007760  Adeh_4134  ABC sugar transporter, inner membrane subunit  40 
 
 
295 aa  147  2.0000000000000003e-34  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_11600  carbohydrate ABC transporter membrane protein  31.18 
 
 
283 aa  147  2.0000000000000003e-34  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009050  Rsph17029_3407  binding-protein-dependent transport systems inner membrane component  31.88 
 
 
277 aa  147  2.0000000000000003e-34  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.353789  normal  0.790416 
 
 
-
 
NC_008010  Dgeo_2818  binding-protein-dependent transport systems inner membrane component  34.23 
 
 
255 aa  147  3e-34  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2624  binding-protein-dependent transport systems inner membrane component  38.06 
 
 
282 aa  147  3e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.313327  normal 
 
 
-
 
NC_010498  EcSMS35_1810  putative sugar ABC transporter, permease protein  33.83 
 
 
280 aa  147  3e-34  Escherichia coli SMS-3-5  Bacteria  normal  0.817708  normal 
 
 
-
 
NC_009620  Smed_3810  binding-protein-dependent transport systems inner membrane component  35.93 
 
 
276 aa  147  3e-34  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3667  binding-protein-dependent transport systems inner membrane component  35.32 
 
 
296 aa  146  4.0000000000000006e-34  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0952  binding-protein-dependent transport systems inner membrane component  34.44 
 
 
271 aa  146  4.0000000000000006e-34  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0549  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpE  33.33 
 
 
272 aa  146  4.0000000000000006e-34  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_2524  binding-protein-dependent transport systems inner membrane component  37.07 
 
 
281 aa  145  6e-34  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0237  sugar ABC transporter, permease protein  32.98 
 
 
291 aa  145  8.000000000000001e-34  Brucella suis 1330  Bacteria  normal  0.963709  n/a   
 
 
-
 
NC_009505  BOV_0230  sugar ABC transporter, permease protein  32.98 
 
 
291 aa  145  8.000000000000001e-34  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6792  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
285 aa  145  9e-34  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0023  binding-protein-dependent transport systems inner membrane component  37.21 
 
 
277 aa  145  9e-34  Marinomonas sp. MWYL1  Bacteria  normal  0.275556  normal  0.424969 
 
 
-
 
NC_012912  Dd1591_3242  binding-protein-dependent transport systems inner membrane component  36 
 
 
275 aa  145  9e-34  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2303  binding-protein-dependent transport systems inner membrane component  31.92 
 
 
275 aa  144  1e-33  Chelativorans sp. BNC1  Bacteria  normal  0.313337  n/a   
 
 
-
 
NC_007963  Csal_0260  binding-protein-dependent transport systems inner membrane component  34.83 
 
 
280 aa  144  2e-33  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_0448  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
281 aa  144  2e-33  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0067  binding-protein-dependent transport systems inner membrane component  32.71 
 
 
282 aa  143  3e-33  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3527  binding-protein-dependent transport systems inner membrane component  33.59 
 
 
283 aa  143  4e-33  Polaromonas sp. JS666  Bacteria  normal  0.16619  normal  0.170584 
 
 
-
 
NC_009667  Oant_0352  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
277 aa  143  4e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3397  binding-protein-dependent transport systems inner membrane component  35.87 
 
 
287 aa  142  5e-33  Ruegeria sp. TM1040  Bacteria  normal  0.141396  normal  0.659935 
 
 
-
 
NC_011899  Hore_04600  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
277 aa  142  5e-33  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0311  binding-protein-dependent transport systems inner membrane component  32.87 
 
 
292 aa  142  7e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.466995  n/a   
 
 
-
 
NC_011894  Mnod_5669  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
275 aa  142  8e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0972  binding-protein-dependent transport systems inner membrane component  32.38 
 
 
278 aa  142  8e-33  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00136246  n/a   
 
 
-
 
NC_013517  Sterm_1526  binding-protein-dependent transport systems inner membrane component  32.75 
 
 
283 aa  142  8e-33  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0956  binding-protein-dependent transport systems inner membrane component  32.38 
 
 
278 aa  142  8e-33  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01289  predicted sugar transporter subunit: membrane component of ABC superfamily  32.62 
 
 
280 aa  141  9.999999999999999e-33  Escherichia coli BL21(DE3)  Bacteria  normal  0.553016  n/a   
 
 
-
 
CP001637  EcDH1_2334  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
280 aa  141  9.999999999999999e-33  Escherichia coli DH1  Bacteria  normal  0.240108  n/a   
 
 
-
 
NC_007484  Noc_0280  ABC transporter, inner membrane subunit  31.21 
 
 
280 aa  141  9.999999999999999e-33  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.787211  n/a   
 
 
-
 
NC_012892  B21_01300  hypothetical protein  32.62 
 
 
280 aa  141  9.999999999999999e-33  Escherichia coli BL21  Bacteria  normal  0.534807  n/a   
 
 
-
 
NC_009800  EcHS_A1427  putative sugar ABC transporter, permease protein  32.62 
 
 
280 aa  141  9.999999999999999e-33  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1522  putative sugar ABC transporter, permease protein  32.62 
 
 
280 aa  141  9.999999999999999e-33  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2313  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
280 aa  141  9.999999999999999e-33  Escherichia coli ATCC 8739  Bacteria  normal  0.676844  normal 
 
 
-
 
NC_009620  Smed_4977  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
288 aa  141  9.999999999999999e-33  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0547171 
 
 
-
 
NC_011899  Hore_00800  binding-protein-dependent transport systems inner membrane component  39.51 
 
 
280 aa  141  9.999999999999999e-33  Halothermothrix orenii H 168  Bacteria  normal  0.303025  n/a   
 
 
-
 
NC_010623  Bphy_4059  binding-protein-dependent transport systems inner membrane component  34.24 
 
 
281 aa  141  9.999999999999999e-33  Burkholderia phymatum STM815  Bacteria  normal  0.965906  normal  0.767737 
 
 
-
 
NC_014212  Mesil_3058  binding-protein-dependent transport systems inner membrane component  32.42 
 
 
286 aa  140  1.9999999999999998e-32  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
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