Gene Smed_3810 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3810 
Symbol 
ID5318364 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp263028 
End bp263858 
Gene Length831 bp 
Protein Length276 aa 
Translation table11 
GC content61% 
IMG OID640775622 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001312555 
Protein GI150375959 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0395] ABC-type sugar transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCGTTA CGCTTGTAAA ACGGACCGCG TTCTACGCGC TCGTTGCCGT CATCATCCTG 
ATTGCCGTCT TTCCATTCTA CTACGCGATC CTGACGAGCT TGAAGTCCGG CACGGCGCTG
TTTCGCATCG ACTACTGGCC GACCGATTTC TCGCTCGCGA ACTATGCCGA CATCTTTTCG
CACGGCACAT TCGTGCGCAA TCTCGGCAAT TCGCTCCTCG TCGCCACGCT CGTGGTCGCC
ATATCGCTCC TTCTCGCCGT TACCGCGGCC TATGCGCTTG CCCGGGTGCG CTTCCGCGGC
CGGGGGCTGC TTTTGCTGAC GATCCTGTCC GTTTCCATGT TCCCGCAGAT CGCCGTGCTT
GCAGGCCTCT TCGAACTCAT CCGCTTCGTC GGGATCTTCA ACACGCCGCT TGCGCTCATA
TTTTCCTACA TGATCTTCAC ACTGCCCTTC ACGGTCTGGG TGCTGACTAC CTTCATGCGG
GACCTGCCGA TCGAGATCGA GGAGGCGGCA ATCGTCGACG GCGCTTCTCC CTGGGTGGTG
ATCACGCGCG TCTTCATGCC ACTGATGTGG CCGGCGCTGG TGACGACCGG CCTTCTCGCC
TTCATTGCGG CGTGGAACGA GTTCCTCTTT GCGCTGACAT TCACGTCGTC CAACACGCAG
CGCACCGTGC CGGTTGCGAT TGCGCTGCTC TCCGGGGGCA GCCAGTTCGA GATTCCCTGG
GGCAACATCA TGGCAGCGTC CGTGATCGTC ACGGTGCCCC TCGTGGTGCT CGTGCTCATC
TTTCAGCGGC GGATCATTTC CGGCCTCACC GCAGGCGGCG TCAAAGGATA G
 
Protein sequence
MVVTLVKRTA FYALVAVIIL IAVFPFYYAI LTSLKSGTAL FRIDYWPTDF SLANYADIFS 
HGTFVRNLGN SLLVATLVVA ISLLLAVTAA YALARVRFRG RGLLLLTILS VSMFPQIAVL
AGLFELIRFV GIFNTPLALI FSYMIFTLPF TVWVLTTFMR DLPIEIEEAA IVDGASPWVV
ITRVFMPLMW PALVTTGLLA FIAAWNEFLF ALTFTSSNTQ RTVPVAIALL SGGSQFEIPW
GNIMAASVIV TVPLVVLVLI FQRRIISGLT AGGVKG