| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2908 |
|---|
| Symbol | |
|---|
| ID | 4023409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3240611 |
|---|
| End bp | 3241522 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637963109 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_570037 |
|---|
| Protein GI | 91977378 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.265009 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0499964 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACGC TCACGATCGA CAAGACCGGG CCGCGACGCA ACCCCGCTTA CGGCAGCATG
AGCCGCGACC GCGCCTGGGC GCTGAAATGG TCCTATGTCT TCCTCACGAT CTTCGCGGCG
TTTTCGCTGG TGCCGCCGCT GTACATGCTG ATCACCTCGC TGAAGAGCAG CCGGGAAATC
TCCGCGGCGA CCAATCCGTG GTGGGTGTTT CACCCGACGC TGGACAATTA CATCCAGTTG
CTCACCTCGA ACCAGTTCCT GACCTTCTTC TTCAACTCGG CGATGGTCTC GATCTTCGTC
GTCACCATCA CCATGCTGAT CAGCGTGCCT GCCGCGTTCG CGCTGGCGCG GATGCGGTTC
TGGGGCTCGG CGACGCTCGC CACCGGCGTG TTCCTGACCT ATCTGATCCC GGACACGCTA
CTGTTCATCC CGCTGTTCAA GATGTTCGCG TCGTTCGGCG ACTGGAGCGG CATCCCGCTG
ATCAACCGCT GGTACGTGCT GCTGATCATC TATCCGACGC TGACCGTGCC GTTCTGCACC
TGGATCATGA TCGGCTATTT CGCCTCGATC CCCAAGGAAC TCGACGAAGC GGCGATCATC
GACGGCGCGT CGTGGTTCCA GACGCTGACG CGGATCTTCA TCCCGGTGGC GATGCCCGGC
ATCATCGCCG CGACGATCTT CGCCTTCACC GTGTCGTGGG CGCAATTCCT CTATCCGCTG
GTGTTCACCA CCTCGGTGGA CCAGCTCGTG CTGCCGGTCG GCATCATCAC CACGCTGATC
AAGGGCGACG TCTTCAACTG GGGACAGATC ATGACCGGGG CGCTGCTCGG TGCCGCGCCG
CCGCTGATCA TCTACGCGTT CCTGATGGAC TATTACGTCG CGGGGCTCAC CGCGGGCGCA
ACGAAAGGGT GA
|
|---|
| Protein sequence | MATLTIDKTG PRRNPAYGSM SRDRAWALKW SYVFLTIFAA FSLVPPLYML ITSLKSSREI
SAATNPWWVF HPTLDNYIQL LTSNQFLTFF FNSAMVSIFV VTITMLISVP AAFALARMRF
WGSATLATGV FLTYLIPDTL LFIPLFKMFA SFGDWSGIPL INRWYVLLII YPTLTVPFCT
WIMIGYFASI PKELDEAAII DGASWFQTLT RIFIPVAMPG IIAATIFAFT VSWAQFLYPL
VFTTSVDQLV LPVGIITTLI KGDVFNWGQI MTGALLGAAP PLIIYAFLMD YYVAGLTAGA
TKG
|
|---|
| |