More than 300 homologs were found in PanDaTox collection
for query gene VEA_003751 on replicon NC_013456
Organism: Vibrio sp. Ex25



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013456  VEA_003751  response regulator  100 
 
 
165 aa  335  9.999999999999999e-92  Vibrio sp. Ex25  Bacteria  normal  0.562532  n/a   
 
 
-
 
NC_009783  VIBHAR_02626  hypothetical protein  87.27 
 
 
165 aa  302  2.0000000000000002e-81  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A0725  response regulator  68.48 
 
 
165 aa  241  3.9999999999999997e-63  Vibrio cholerae O395  Bacteria  normal  0.836787  n/a   
 
 
-
 
NC_009831  Ssed_3209  putative chemotaxis protein CheY  39.74 
 
 
157 aa  127  9.000000000000001e-29  Shewanella sediminis HAW-EB3  Bacteria  normal  0.62967  normal 
 
 
-
 
NC_010655  Amuc_0857  response regulator receiver protein  38.46 
 
 
159 aa  117  6e-26  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.60456  normal 
 
 
-
 
NC_013456  VEA_003584  putative chemotaxis protein CheY  40.69 
 
 
157 aa  116  1.9999999999999998e-25  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02545  hypothetical protein  35.26 
 
 
178 aa  112  3e-24  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008709  Ping_2342  CheY-like chemotaxis protein, response regulator receiver  38.82 
 
 
157 aa  110  1.0000000000000001e-23  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0482174 
 
 
-
 
NC_009457  VC0395_A0934  putative chemotaxis protein CheY  35.26 
 
 
158 aa  109  2.0000000000000002e-23  Vibrio cholerae O395  Bacteria  normal  0.0812215  n/a   
 
 
-
 
NC_008709  Ping_2340  CheY-like chemotaxis protein, response regulator receiver  40.3 
 
 
158 aa  106  2e-22  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0371017 
 
 
-
 
NC_009457  VC0395_A0726  response regulator  34.91 
 
 
651 aa  93.6  1e-18  Vibrio cholerae O395  Bacteria  hitchhiker  0.000761968  n/a   
 
 
-
 
NC_009783  VIBHAR_02625  hypothetical protein  31.9 
 
 
646 aa  89.4  2e-17  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003750  sensor histidine kinase  30.77 
 
 
646 aa  86.7  1e-16  Vibrio sp. Ex25  Bacteria  normal  0.0232552  n/a   
 
 
-
 
NC_013730  Slin_6098  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  34.51 
 
 
553 aa  72  0.000000000003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4588  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  40.18 
 
 
567 aa  70.9  0.000000000008  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1342  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  32.2 
 
 
556 aa  70.5  0.000000000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1190  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  37.39 
 
 
560 aa  68.2  0.00000000005  Conexibacter woesei DSM 14684  Bacteria  normal  0.716725  unclonable  0.0000120152 
 
 
-
 
NC_013037  Dfer_0369  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  31.86 
 
 
567 aa  68.2  0.00000000005  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.106418 
 
 
-
 
NC_008312  Tery_4817  response regulator receiver modulated serine phosphatase with GAF sensor  35.26 
 
 
553 aa  66.2  0.0000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4317  response regulator receiver modulated GAF sensor protein  39.52 
 
 
317 aa  66.2  0.0000000002  'Nostoc azollae' 0708  Bacteria  normal  0.248315  n/a   
 
 
-
 
NC_010623  Bphy_4576  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  31.94 
 
 
553 aa  65.1  0.0000000004  Burkholderia phymatum STM815  Bacteria  normal  0.494559  normal  0.955166 
 
 
-
 
NC_008312  Tery_3971  putative GAF sensor protein  34.81 
 
 
312 aa  65.1  0.0000000004  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1070  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  31.97 
 
 
554 aa  65.1  0.0000000005  Mycobacterium sp. MCS  Bacteria  normal  0.970037  n/a   
 
 
-
 
NC_009077  Mjls_1097  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  31.97 
 
 
554 aa  65.1  0.0000000005  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_1086  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  31.97 
 
 
554 aa  65.1  0.0000000005  Mycobacterium sp. KMS  Bacteria  normal  0.667334  normal  0.027498 
 
 
-
 
NC_008312  Tery_3155  adenylate/guanylate cyclase  37.3 
 
 
1172 aa  64.3  0.0000000008  Trichodesmium erythraeum IMS101  Bacteria  normal  0.386213  hitchhiker  0.00095291 
 
 
-
 
NC_008576  Mmc1_2496  two component, sigma54 specific, Fis family transcriptional regulator  29.68 
 
 
495 aa  64.3  0.0000000008  Magnetococcus sp. MC-1  Bacteria  normal  0.0534594  normal  0.148721 
 
 
-
 
NC_012918  GM21_2363  response regulator receiver protein  29.5 
 
 
189 aa  63.5  0.000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_0662  response regulator receiver (CheY) and GAF modulated Serine phosphatase  37.21 
 
 
557 aa  63.5  0.000000001  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00161844  normal  0.0426655 
 
 
-
 
NC_014158  Tpau_0406  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulfide oxidoreductase  36.3 
 
 
557 aa  63.9  0.000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_1371  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  31.29 
 
 
582 aa  63.2  0.000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.858891  normal  0.520575 
 
 
-
 
NC_008228  Patl_1534  response regulator receiver protein  33.33 
 
 
439 aa  62.8  0.000000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2793  two-component response regulator  32.52 
 
 
154 aa  62.8  0.000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0292911 
 
 
-
 
NC_007413  Ava_1423  response regulator receiver (CheY) and GAF domain-containing protein  40.16 
 
 
315 aa  62.4  0.000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  33.12 
 
 
1180 aa  62  0.000000003  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_013131  Caci_6387  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  32 
 
 
565 aa  62.4  0.000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.958979  normal  0.0107564 
 
 
-
 
NC_013037  Dfer_2388  response regulator receiver protein  33.86 
 
 
154 aa  61.6  0.000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.319662 
 
 
-
 
NC_009338  Mflv_5003  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  34.78 
 
 
554 aa  61.2  0.000000006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3476  response regulator receiver modulated metal dependent phosphohydrolase  31.39 
 
 
479 aa  60.8  0.000000007  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1179  sigma-54 factor, interaction region  29.49 
 
 
482 aa  60.8  0.000000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0557788  normal 
 
 
-
 
NC_009921  Franean1_2259  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  35.34 
 
 
582 aa  60.5  0.000000009  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0983279 
 
 
-
 
NC_008781  Pnap_1956  two component, sigma54 specific, Fis family transcriptional regulator  29.88 
 
 
486 aa  60.1  0.00000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.696783  normal 
 
 
-
 
NC_007204  Psyc_0720  response regulator receiver, fis type  32.84 
 
 
312 aa  60.5  0.00000001  Psychrobacter arcticus 273-4  Bacteria  normal  0.935409  normal 
 
 
-
 
NC_008825  Mpe_A2450  putative two-component response regulator  34.71 
 
 
431 aa  60.1  0.00000001  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1404  response regulator receiver protein  33.33 
 
 
154 aa  60.5  0.00000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1315  response regulator receiver sensor signal transduction histidine kinase  31.82 
 
 
365 aa  60.1  0.00000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3364  hydrogenase accessory protein HypB  27.95 
 
 
492 aa  59.7  0.00000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.224656 
 
 
-
 
NC_007298  Daro_0966  type II secretion system protein E  29.73 
 
 
746 aa  59.3  0.00000002  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.783688 
 
 
-
 
NC_013595  Sros_2038  pyridine nucleotide-disulphide oxidoreductase  33.05 
 
 
554 aa  59.7  0.00000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0938493  normal 
 
 
-
 
NC_009664  Krad_0457  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  32.77 
 
 
578 aa  59.7  0.00000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.809625  normal  0.293491 
 
 
-
 
NC_013037  Dfer_2100  response regulator receiver protein  33.06 
 
 
117 aa  58.9  0.00000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.515459 
 
 
-
 
NC_010814  Glov_1569  response regulator receiver modulated metal dependent phosphohydrolase  30.88 
 
 
452 aa  58.9  0.00000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1766  response regulator receiver domain-containing protein  32.09 
 
 
311 aa  59.3  0.00000003  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.143421 
 
 
-
 
NC_008687  Pden_3109  two component, sigma54 specific, Fis family transcriptional regulator  30.71 
 
 
493 aa  59.3  0.00000003  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_2839  GAF(s) sensor(s)-containing protein serine phosphatase  33.86 
 
 
557 aa  58.5  0.00000004  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3241  response regulator  31.2 
 
 
428 aa  58.2  0.00000004  Colwellia psychrerythraea 34H  Bacteria  normal  0.0406645  n/a   
 
 
-
 
NC_007298  Daro_3962  two component, sigma54 specific, Fis family transcriptional regulator  32.76 
 
 
495 aa  58.2  0.00000004  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3477  PAS/PAC sensor hybrid histidine kinase  30 
 
 
1465 aa  58.5  0.00000004  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_1481  multi-sensor signal transduction histidine kinase  33.55 
 
 
1425 aa  58.5  0.00000004  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_010571  Oter_0430  response regulator receiver protein  34.25 
 
 
423 aa  58.2  0.00000005  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal 
 
 
-
 
NC_010571  Oter_2708  response regulator receiver protein  31.71 
 
 
141 aa  58.2  0.00000005  Opitutus terrae PB90-1  Bacteria  normal  0.0523429  normal 
 
 
-
 
NC_008825  Mpe_A2808  two component, sigma54 specific, Fis family transcriptional regulator  33.04 
 
 
482 aa  58.2  0.00000005  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2934  response regulator receiver protein  35.9 
 
 
129 aa  57.8  0.00000006  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000852899  n/a   
 
 
-
 
NC_009512  Pput_2745  response regulator receiver protein  31.36 
 
 
456 aa  57.8  0.00000006  Pseudomonas putida F1  Bacteria  normal  0.862781  normal 
 
 
-
 
NC_011004  Rpal_1171  two component, sigma54 specific, transcriptional regulator, Fis family  28.66 
 
 
482 aa  57.8  0.00000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2371  response regulator receiver protein  32.28 
 
 
382 aa  57.8  0.00000007  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0784161  n/a   
 
 
-
 
NC_002947  PP_2942  response regulator  31.36 
 
 
456 aa  57  0.0000001  Pseudomonas putida KT2440  Bacteria  normal  0.714666  normal  0.271158 
 
 
-
 
NC_007298  Daro_0972  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  28.68 
 
 
994 aa  56.6  0.0000001  Dechloromonas aromatica RCB  Bacteria  normal  0.172335  normal 
 
 
-
 
NC_007413  Ava_2239  adenylate/guanylate cyclase  32.05 
 
 
1156 aa  57.4  0.0000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159061  normal 
 
 
-
 
NC_012918  GM21_2368  putative PAS/PAC sensor protein  28.79 
 
 
270 aa  57  0.0000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007493  RSP_0507  HupR response regulator  26.67 
 
 
491 aa  57  0.0000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1854  histidine kinase  31.78 
 
 
1111 aa  56.6  0.0000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.131557  normal 
 
 
-
 
NC_009049  Rsph17029_2158  two component, sigma54 specific, Fis family transcriptional regulator  26.67 
 
 
491 aa  57  0.0000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00791251  normal  0.142838 
 
 
-
 
NC_004347  SO_2541  response regulator  38.98 
 
 
441 aa  56.2  0.0000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_03496  response regulator  31.67 
 
 
434 aa  56.2  0.0000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4051  response regulator receiver modulated diguanylate cyclase  33.33 
 
 
360 aa  56.6  0.0000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.255257  normal  0.825864 
 
 
-
 
NC_007925  RPC_3757  two component, sigma54 specific, Fis family transcriptional regulator  26.75 
 
 
499 aa  56.6  0.0000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_3081  PAS/PAC sensor hybrid histidine kinase  33.06 
 
 
638 aa  56.2  0.0000002  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.0200059 
 
 
-
 
NC_013757  Gobs_2253  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  34.07 
 
 
552 aa  56.2  0.0000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.388258  n/a   
 
 
-
 
NC_011884  Cyan7425_3735  signal transduction histidine kinase  28.36 
 
 
1183 aa  56.6  0.0000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.709518  normal 
 
 
-
 
NC_010505  Mrad2831_2189  multi-sensor hybrid histidine kinase  34.17 
 
 
628 aa  56.2  0.0000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0671838  normal 
 
 
-
 
NC_012918  GM21_2367  response regulator receiver modulated metal dependent phosphohydrolase  30.5 
 
 
538 aa  55.5  0.0000003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011894  Mnod_5456  multi-sensor hybrid histidine kinase  33.33 
 
 
641 aa  55.5  0.0000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0579502  n/a   
 
 
-
 
NC_007298  Daro_0970  response regulator receiver  33.33 
 
 
438 aa  55.5  0.0000003  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2842  PAS sensor protein  32 
 
 
622 aa  55.5  0.0000003  Methylobacterium extorquens PA1  Bacteria  normal  0.174863  normal 
 
 
-
 
NC_011757  Mchl_3068  PAS/PAC sensor hybrid histidine kinase  32 
 
 
622 aa  55.5  0.0000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.231547  normal 
 
 
-
 
NC_007517  Gmet_3473  response regulator receiver domain-containing protein  29.08 
 
 
823 aa  55.5  0.0000003  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0605  response regulator  28.93 
 
 
536 aa  55.5  0.0000003  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_4102  two component, sigma54 specific, Fis family transcriptional regulator  31.03 
 
 
475 aa  55.8  0.0000003  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2184  two component, sigma54 specific, Fis family transcriptional regulator  29.3 
 
 
497 aa  55.8  0.0000003  Xanthobacter autotrophicus Py2  Bacteria  normal  0.682977  normal  0.229753 
 
 
-
 
NC_007973  Rmet_1542  response regulator receiver domain-containing protein  34.19 
 
 
309 aa  55.5  0.0000003  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000150385  normal  0.319028 
 
 
-
 
NC_010725  Mpop_2960  PAS/PAC sensor hybrid histidine kinase  32 
 
 
622 aa  55.8  0.0000003  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_2074  two component Fis family transcriptional regulator  34.65 
 
 
227 aa  55.5  0.0000004  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1525  ATP-binding region ATPase domain protein  27.56 
 
 
359 aa  55.1  0.0000004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.331233  normal  0.636632 
 
 
-
 
NC_009943  Dole_3257  response regulator receiver modulated metal dependent phosphohydrolase  30.92 
 
 
358 aa  55.1  0.0000005  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  27.81 
 
 
515 aa  55.1  0.0000005  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_008463  PA14_26830  putative two-component response regulator  29.66 
 
 
303 aa  54.7  0.0000006  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2364  response regulator receiver protein  27.54 
 
 
806 aa  54.3  0.0000006  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_1660  response regulator receiver protein  34.68 
 
 
126 aa  54.3  0.0000007  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2553  response regulator receiver protein  34.68 
 
 
126 aa  54.3  0.0000007  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.1194499999999997e-20 
 
 
-
 
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