| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1179 |
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| Symbol | |
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| ID | 4021655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 1337223 |
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| End bp | 1338671 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637961371 |
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| Product | sigma-54 factor, interaction region |
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| Protein accession | YP_568318 |
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| Protein GI | 91975659 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0557788 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGGAC AAGCGACAGT CCTGGTGGTC GACGACGAGA TCCGCTCGCT CGAATCGCTG
CAGCGCGTGC TGAGTGACGA ATTCGAAGTG ATCTGCGCGC GTGACGCCAC TGAGGCGCGC
CGTGTGCTGG AAAGCGAGAT CGTCCACGCC ATCCTGTGCG ATCAACGCAT GCAATACGAG
ACCGGGGTCG ATTTTCTCAA GCACGTCCGT GAGACCTGGC CCGATCCGGT GCGGATGATC
ATCTCCGGCT ATTCGGACAG CGAAGACATT ATCGCCGGCA TCAATGAGGC CGGGATCTAT
CAGTACATCG CCAAGCCGTG GCACCCGGAC AAATTGCTCG CCACCGTGCG CGGCGCGGTG
GAACTGTTCC GGCTGCAGAA GGAAACCGAG ACCGCCAGCA TCGACGTCAA GCTGACGCCG
GAGCGGGTGC AGCGCGTCGT CACCGAGAAG CGCGGCGTGG CGCGCAAGCT GTACGATTTC
GACCGCATCG TGCACGCGCC GGATAGCCCC CTGGGCGACG TGATCGCGCT CGGCAAGCGC
GCCGCCGAGT TCGATATTTC GGTGCTGATC ACCGGCGAGT CCGGCACCGG CAAGGAGCTG
CTTGCCCGGG CGATCCACTA CGGCTCGGCG CGCTCGGGCA AGGCGTTCGT GGTCGAGAAT
TGCGGCGCGC TGCCGGACGA GTTGCTGGAG AGCGAATTGT TCGGCTGCAA GAAGGGCGCG
TTCACCGGCG CCTATCAGGA TCGCGTCGGG CTGTTCGAGG TCGCAGACGG CGGCACGATC
TTCCTCGACG AGATCGGCGA GACCTCGCCG GCGTTTCAGG TCAAGCTGCT GCGGGTCTTG
CAGGAGAGCG AGATCCGCCC GCTCGGGGCG CAGCGCGTGC GCAAGGTCGA CGTCCGAATC
GTCGCCGCCA CCAATCGCGA CCTCGAGGCC GAAGTTCGCG CCGGCCGATT CCGGCGCGAT
CTGTTCTATC GGCTGGCGGC GTTCCCGCTG CACATGCCGC CGCTGCGCGA ACGGCCGATG
GACGTGCCAT TGATTGCCGC CAAGGTGCTC GCCGATGTCA CGAAATCCTA CGGCCGCGCC
ATCGAGGGCA TCTCGCCGGG AGCGCTGGCC CGGATGCGGC GCTATGATTG GCCGGGCAAT
GTCCGCGAGC TGCAGAACGA GATCCAGCGT ATGGTGGTGC TGACCGACGA CGGCTGGCTG
CAAGAGGCCG ATCTGTCGGC GCGGATCCGG CAGGGCGGCG AGCCGATCCA GCTGCAGTCG
GCGCATCACA GCAGCGCGTC GCTGAAAACC AATATCGAGG CGCTGGAGCG GCACATGATC
GTCGAGGCGC TGGATCGCCA TGGCGGCAAT ATCAGCCGGG TCGCGGGCGA ACTCGGCCTG
TCGCGAGTCG GCCTGCGCAA CAAGCTCGGC CGCTATGATC TGCGTAAGGG CCTCAGCGAT
GAGGTCTGA
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| Protein sequence | MSGQATVLVV DDEIRSLESL QRVLSDEFEV ICARDATEAR RVLESEIVHA ILCDQRMQYE
TGVDFLKHVR ETWPDPVRMI ISGYSDSEDI IAGINEAGIY QYIAKPWHPD KLLATVRGAV
ELFRLQKETE TASIDVKLTP ERVQRVVTEK RGVARKLYDF DRIVHAPDSP LGDVIALGKR
AAEFDISVLI TGESGTGKEL LARAIHYGSA RSGKAFVVEN CGALPDELLE SELFGCKKGA
FTGAYQDRVG LFEVADGGTI FLDEIGETSP AFQVKLLRVL QESEIRPLGA QRVRKVDVRI
VAATNRDLEA EVRAGRFRRD LFYRLAAFPL HMPPLRERPM DVPLIAAKVL ADVTKSYGRA
IEGISPGALA RMRRYDWPGN VRELQNEIQR MVVLTDDGWL QEADLSARIR QGGEPIQLQS
AHHSSASLKT NIEALERHMI VEALDRHGGN ISRVAGELGL SRVGLRNKLG RYDLRKGLSD
EV
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