More than 300 homologs were found in PanDaTox collection
for query gene VC0395_A0934 on replicon NC_009457
Organism: Vibrio cholerae O395



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009457  VC0395_A0934  putative chemotaxis protein CheY  100 
 
 
158 aa  323  5e-88  Vibrio cholerae O395  Bacteria  normal  0.0812215  n/a   
 
 
-
 
NC_013456  VEA_003584  putative chemotaxis protein CheY  71.34 
 
 
157 aa  247  5e-65  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02545  hypothetical protein  70.78 
 
 
178 aa  235  2e-61  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_3209  putative chemotaxis protein CheY  64.33 
 
 
157 aa  218  3.9999999999999997e-56  Shewanella sediminis HAW-EB3  Bacteria  normal  0.62967  normal 
 
 
-
 
NC_008709  Ping_2342  CheY-like chemotaxis protein, response regulator receiver  52.23 
 
 
157 aa  171  3.9999999999999995e-42  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0482174 
 
 
-
 
NC_010655  Amuc_0857  response regulator receiver protein  52.23 
 
 
159 aa  170  9e-42  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.60456  normal 
 
 
-
 
NC_008709  Ping_2340  CheY-like chemotaxis protein, response regulator receiver  50.63 
 
 
158 aa  166  1e-40  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0371017 
 
 
-
 
NC_009457  VC0395_A0725  response regulator  37.82 
 
 
165 aa  117  7e-26  Vibrio cholerae O395  Bacteria  normal  0.836787  n/a   
 
 
-
 
NC_013456  VEA_003751  response regulator  35.26 
 
 
165 aa  109  2.0000000000000002e-23  Vibrio sp. Ex25  Bacteria  normal  0.562532  n/a   
 
 
-
 
NC_009783  VIBHAR_02626  hypothetical protein  35.26 
 
 
165 aa  108  4.0000000000000004e-23  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009429  Rsph17025_3364  hydrogenase accessory protein HypB  33.77 
 
 
492 aa  79.7  0.00000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.224656 
 
 
-
 
NC_009049  Rsph17029_2158  two component, sigma54 specific, Fis family transcriptional regulator  31.41 
 
 
491 aa  76.6  0.0000000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00791251  normal  0.142838 
 
 
-
 
NC_007493  RSP_0507  HupR response regulator  31.41 
 
 
491 aa  76.6  0.0000000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0885  response regulator receiver modulated metal dependent phosphohydrolase  35.51 
 
 
324 aa  75.1  0.0000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_4317  response regulator receiver modulated GAF sensor protein  35.77 
 
 
317 aa  72.4  0.000000000002  'Nostoc azollae' 0708  Bacteria  normal  0.248315  n/a   
 
 
-
 
NC_012918  GM21_3375  response regulator receiver modulated metal dependent phosphohydrolase  34.06 
 
 
324 aa  72  0.000000000003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011884  Cyan7425_3735  signal transduction histidine kinase  36.22 
 
 
1183 aa  72  0.000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.709518  normal 
 
 
-
 
NC_008312  Tery_3971  putative GAF sensor protein  34.44 
 
 
312 aa  71.2  0.000000000005  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1097  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  40.18 
 
 
554 aa  70.1  0.00000000001  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_1086  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  40.18 
 
 
554 aa  70.1  0.00000000001  Mycobacterium sp. KMS  Bacteria  normal  0.667334  normal  0.027498 
 
 
-
 
NC_008146  Mmcs_1070  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  40.18 
 
 
554 aa  70.1  0.00000000001  Mycobacterium sp. MCS  Bacteria  normal  0.970037  n/a   
 
 
-
 
NC_008726  Mvan_1371  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  40.18 
 
 
582 aa  69.3  0.00000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.858891  normal  0.520575 
 
 
-
 
NC_010814  Glov_1895  response regulator receiver protein  36.43 
 
 
185 aa  68.6  0.00000000003  Geobacter lovleyi SZ  Bacteria  normal  0.706146  n/a   
 
 
-
 
NC_008609  Ppro_2721  response regulator receiver protein  34.88 
 
 
188 aa  68.2  0.00000000004  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_5003  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  40.52 
 
 
554 aa  68.2  0.00000000005  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2363  response regulator receiver protein  33.08 
 
 
189 aa  67.8  0.00000000006  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008687  Pden_3109  two component, sigma54 specific, Fis family transcriptional regulator  34.43 
 
 
493 aa  67.8  0.00000000006  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7223  response regulator receiver modulated metal dependent phosphohydrolase  35.71 
 
 
473 aa  67.4  0.00000000007  Burkholderia sp. 383  Bacteria  normal  0.58817  normal  0.218696 
 
 
-
 
NC_009921  Franean1_2259  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  37.72 
 
 
582 aa  67.4  0.00000000007  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0983279 
 
 
-
 
NC_012918  GM21_2368  putative PAS/PAC sensor protein  33.58 
 
 
270 aa  67  0.0000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009457  VC0395_A0605  response regulator  34.17 
 
 
536 aa  66.6  0.0000000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1423  response regulator receiver (CheY) and GAF domain-containing protein  35.25 
 
 
315 aa  66.6  0.0000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1190  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  36.61 
 
 
560 aa  65.9  0.0000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.716725  unclonable  0.0000120152 
 
 
-
 
NC_013730  Slin_6098  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  36.61 
 
 
553 aa  65.9  0.0000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3476  response regulator receiver modulated metal dependent phosphohydrolase  32.61 
 
 
479 aa  66.2  0.0000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03496  response regulator  35.83 
 
 
434 aa  65.9  0.0000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1342  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  38.05 
 
 
556 aa  65.9  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4576  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  39.32 
 
 
553 aa  64.7  0.0000000004  Burkholderia phymatum STM815  Bacteria  normal  0.494559  normal  0.955166 
 
 
-
 
NC_009664  Krad_0457  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  38.05 
 
 
578 aa  63.9  0.0000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.809625  normal  0.293491 
 
 
-
 
NC_013131  Caci_6387  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  40.35 
 
 
565 aa  64.3  0.0000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.958979  normal  0.0107564 
 
 
-
 
NC_008340  Mlg_2012  two component, sigma54 specific, Fis family transcriptional regulator  32.79 
 
 
484 aa  64.3  0.0000000007  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6441  response regulator receiver modulated metal dependent phosphohydrolase  33.93 
 
 
470 aa  63.9  0.0000000008  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1569  response regulator receiver modulated metal dependent phosphohydrolase  33.08 
 
 
452 aa  63.5  0.000000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2184  two component, sigma54 specific, Fis family transcriptional regulator  30.32 
 
 
497 aa  63.2  0.000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  0.682977  normal  0.229753 
 
 
-
 
NC_009078  BURPS1106A_A2231  response regulator  38.74 
 
 
475 aa  63.2  0.000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0369  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  37.5 
 
 
567 aa  62.8  0.000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.106418 
 
 
-
 
NC_009656  PSPA7_2645  response regulator  38.14 
 
 
447 aa  62.8  0.000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0366662  n/a   
 
 
-
 
NC_008062  Bcen_5575  response regulator receiver modulated metal dependent phosphohydrolase  33.04 
 
 
472 aa  63.2  0.000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2793  two-component response regulator  30.53 
 
 
154 aa  62.8  0.000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0292911 
 
 
-
 
NC_008544  Bcen2424_5939  response regulator receiver modulated metal dependent phosphohydrolase  33.04 
 
 
472 aa  63.2  0.000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.862183 
 
 
-
 
NC_007298  Daro_0970  response regulator receiver  34.43 
 
 
438 aa  62.4  0.000000003  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A0711  response regulator  37.84 
 
 
518 aa  62  0.000000003  Burkholderia pseudomallei 1710b  Bacteria  normal  0.226782  n/a   
 
 
-
 
NC_010557  BamMC406_5980  response regulator receiver modulated metal dependent phosphohydrolase  33.93 
 
 
469 aa  62  0.000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_2839  GAF(s) sensor(s)-containing protein serine phosphatase  34.88 
 
 
557 aa  62  0.000000003  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_6276  response regulator receiver modulated metal dependent phosphohydrolase  33.93 
 
 
469 aa  62  0.000000003  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_30830  putative two-component response regulator  40.22 
 
 
447 aa  62  0.000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0592396  hitchhiker  0.000000000000489784 
 
 
-
 
NC_003910  CPS_3241  response regulator  31.39 
 
 
428 aa  61.6  0.000000004  Colwellia psychrerythraea 34H  Bacteria  normal  0.0406645  n/a   
 
 
-
 
NC_009079  BMA10247_A0599  response regulator  37.84 
 
 
475 aa  61.6  0.000000004  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1662  response regulator  37.84 
 
 
475 aa  61.6  0.000000004  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1716  response regulator  37.84 
 
 
475 aa  61.6  0.000000004  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1923  response regulator  37.84 
 
 
475 aa  61.6  0.000000004  Burkholderia mallei NCTC 10229  Bacteria  normal  0.537818  n/a   
 
 
-
 
NC_013235  Namu_4588  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  32.17 
 
 
567 aa  61.6  0.000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A2314  response regulator  37.84 
 
 
475 aa  61.6  0.000000004  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3472  response regulator receiver domain-containing protein  30.88 
 
 
187 aa  61.2  0.000000005  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_3257  response regulator receiver modulated metal dependent phosphohydrolase  36.3 
 
 
358 aa  61.2  0.000000005  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_0406  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulfide oxidoreductase  36.61 
 
 
557 aa  61.2  0.000000005  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1161  two component, sigma54 specific, Fis family transcriptional regulator  27.92 
 
 
496 aa  61.2  0.000000006  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.175427  normal 
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  34.56 
 
 
1180 aa  60.8  0.000000007  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_010725  Mpop_2960  PAS/PAC sensor hybrid histidine kinase  36.22 
 
 
622 aa  60.8  0.000000007  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0662  response regulator receiver (CheY) and GAF modulated Serine phosphatase  32.58 
 
 
557 aa  60.5  0.000000008  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00161844  normal  0.0426655 
 
 
-
 
NC_008228  Patl_1534  response regulator receiver protein  33.6 
 
 
439 aa  60.8  0.000000008  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_2842  PAS sensor protein  36.22 
 
 
622 aa  60.5  0.000000009  Methylobacterium extorquens PA1  Bacteria  normal  0.174863  normal 
 
 
-
 
NC_011757  Mchl_3068  PAS/PAC sensor hybrid histidine kinase  36.22 
 
 
622 aa  60.5  0.000000009  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.231547  normal 
 
 
-
 
NC_010505  Mrad2831_2189  multi-sensor hybrid histidine kinase  38.84 
 
 
628 aa  60.1  0.00000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0671838  normal 
 
 
-
 
NC_007643  Rru_A0692  response regulator receiver domain-containing protein  32.31 
 
 
390 aa  59.3  0.00000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0615  response regulator  35.77 
 
 
484 aa  59.3  0.00000002  Burkholderia thailandensis E264  Bacteria  normal  0.177724  n/a   
 
 
-
 
NC_008825  Mpe_A2808  two component, sigma54 specific, Fis family transcriptional regulator  30.66 
 
 
482 aa  59.3  0.00000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0606  response regulator  33.61 
 
 
447 aa  59.3  0.00000002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2298  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  33.63 
 
 
569 aa  58.5  0.00000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2942  response regulator  31.01 
 
 
456 aa  58.5  0.00000004  Pseudomonas putida KT2440  Bacteria  normal  0.714666  normal  0.271158 
 
 
-
 
NC_007413  Ava_2239  adenylate/guanylate cyclase  35.06 
 
 
1156 aa  58.5  0.00000004  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159061  normal 
 
 
-
 
NC_007908  Rfer_1980  response regulator receiver modulated metal dependent phosphohydrolase  36.07 
 
 
449 aa  58.2  0.00000004  Rhodoferax ferrireducens T118  Bacteria  normal  0.247955  n/a   
 
 
-
 
NC_008781  Pnap_1956  two component, sigma54 specific, Fis family transcriptional regulator  32.52 
 
 
486 aa  58.5  0.00000004  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.696783  normal 
 
 
-
 
NC_008609  Ppro_2723  putative PAS/PAC sensor protein  31.62 
 
 
285 aa  58.2  0.00000004  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_4817  response regulator receiver modulated serine phosphatase with GAF sensor  32.85 
 
 
553 aa  58.2  0.00000004  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_26830  putative two-component response regulator  29.27 
 
 
303 aa  58.2  0.00000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1520  chemotaxis protein CheY  30.89 
 
 
127 aa  57.8  0.00000005  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2541  response regulator  33.88 
 
 
441 aa  58.2  0.00000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007973  Rmet_2949  response regulator receiver domain-containing protein  42.03 
 
 
332 aa  57.8  0.00000005  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_3155  adenylate/guanylate cyclase  39.6 
 
 
1172 aa  58.2  0.00000005  Trichodesmium erythraeum IMS101  Bacteria  normal  0.386213  hitchhiker  0.00095291 
 
 
-
 
NC_007298  Daro_3962  two component, sigma54 specific, Fis family transcriptional regulator  31.62 
 
 
495 aa  57.8  0.00000006  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2450  putative two-component response regulator  43.42 
 
 
431 aa  57.8  0.00000006  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1529  response regulator receiver  34.48 
 
 
151 aa  57.8  0.00000006  Pedobacter heparinus DSM 2366  Bacteria  normal  0.542106  normal 
 
 
-
 
NC_011884  Cyan7425_4301  signal transduction histidine kinase  32.5 
 
 
2693 aa  57.8  0.00000006  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4051  response regulator receiver modulated diguanylate cyclase  30.88 
 
 
360 aa  57.4  0.00000007  Haliangium ochraceum DSM 14365  Bacteria  normal  0.255257  normal  0.825864 
 
 
-
 
NC_011894  Mnod_5456  multi-sensor hybrid histidine kinase  36 
 
 
641 aa  57.4  0.00000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0579502  n/a   
 
 
-
 
NC_008228  Patl_3029  response regulator receiver protein  31.71 
 
 
127 aa  57.4  0.00000007  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_2388  response regulator receiver protein  31.2 
 
 
154 aa  57.4  0.00000008  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.319662 
 
 
-
 
NC_006348  BMA0261  response regulator  37.17 
 
 
439 aa  57.4  0.00000008  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0745  response regulator/HD domain-containing protein  36.36 
 
 
481 aa  57.4  0.00000008  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
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