Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_1956 |
Symbol | |
ID | 4687044 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 2078603 |
End bp | 2080063 |
Gene Length | 1461 bp |
Protein Length | 486 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639834964 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_982186 |
Protein GI | 121604857 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.696783 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTCT CTGATTCACT GCCCAGCATC CTCGTGGTGG ACGACGAAGT GCATTCGCAG GCTGCCATGC GGCGAACGCT CGATGAAGAC TTCACCGTGT TCACGGCCAG CGATGCCGAC GAGGCCAGAG CCCTGCTGGA GCGCCAGGCG GTCAGCGTGA TCTTGTGTGA CCAGCGCATG CCCGGGCTGA CCGGCGTGGC TTTTCTGAAA GAGGTGCGCG AGCGCTGGCC GGACACGGTG CGCATCGTGA TTTCCGGCTA TACCGACACC GAAGACATCA TCGCCGGCAT CAATGACGCA GGCATCTACC AGTACATTTT GAAGCCCTGG GTGCCGGACC ACCTGCTGCA AACCGTGCGC ACAGCCGCCG AGGCGCAAAC CCTGCAGCGC AGCATGAACC AGCTGGACCT GGAGCTGCGC ACCAGCACGC CGGTGCTGCG CCAGCGGGTC GCCCACAAGC TGGCGCAGGC GCGCAGTGTC TTTGACTTTG AGCGTATCGA ACGCGGCTCG AACAGTCCCT TGAATGCGGT CTGCAGCATG GCCGAGCGGG TGGCGCGCTA TGACCTGAGC GTGCTGGTGC TGGGCGAGTC CGGCAGCGGC AAGGAGCTGA TCGCTCGCGC CATCCACTAC GCCAGTCCGC GCGGAGGCGG CCCGTTCGTG GTGGAAAACT GCGCGGCCAT TCCTGACACA TTGCTGGAGT CCGAACTGTT CGGCCACAAG CGCGGCTCCT TCACCGGCGC CTATGAAGAT CGCCCGGGAC TCTTTCAGCG GGCCAACGGC GGCACCGTTT TCCTGGACGA GATTGGCGAG ACCTCCCCGG CTTTTCAGGT GCGGGTGCTG CGGGTGCTGC AGGAAGGCGA GGTGCGGCCG GTGGGGGCGG CACGTCCCGT TCCGGTCAAT GTCCGGGTGA TTGCCGCCAC CCACCGCGAC CTGGAGCAGC GGGTGCATGA GGGCCTGTTC CGCAAAGACC TGTACTACCG CCTGGCCGGC GTGTCGATCA CCGTGCCGCC GCTGCGCGAG CGCGCGGGAG ACATCGCGCC GATTGCCCGG CGCCTGGTGC GCGATGTCGG CGCCGAGCTT GGCCGGCCGG GCGCCACGCT CAATGACGAG GCCTTGGCCT GCCTGATGGG CTACCCGTGG CCGGGCAATA TCCGGGAACT GCGCAATGAG ATTGCCCGCG CCGTGGCCCT GAGCGACGGG GACGAGATTC AGGCGCAGAC CTTTTCACTG CGCGTGCTGC ACGGCCAGGC CGGTCTGGCC GCCAGCGGCC AGGCCGCCGA CCAGGCGCTG TCGCTGCCGA GCAGCGGCAC CCTGAGCGAG CGGCTCGATG CGATTGAAAC CATGGTGCTG CGCGAAACCC TGCTGCGCCA CCGCTGGAAC AAGACCCACG CCGCCAGGGA GCTGGGCCTG TCGCGGGTCG GTCTGCGCGG CAAAATGGTC CGTTTCGGAC TGGAGGGCTA A
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Protein sequence | MNLSDSLPSI LVVDDEVHSQ AAMRRTLDED FTVFTASDAD EARALLERQA VSVILCDQRM PGLTGVAFLK EVRERWPDTV RIVISGYTDT EDIIAGINDA GIYQYILKPW VPDHLLQTVR TAAEAQTLQR SMNQLDLELR TSTPVLRQRV AHKLAQARSV FDFERIERGS NSPLNAVCSM AERVARYDLS VLVLGESGSG KELIARAIHY ASPRGGGPFV VENCAAIPDT LLESELFGHK RGSFTGAYED RPGLFQRANG GTVFLDEIGE TSPAFQVRVL RVLQEGEVRP VGAARPVPVN VRVIAATHRD LEQRVHEGLF RKDLYYRLAG VSITVPPLRE RAGDIAPIAR RLVRDVGAEL GRPGATLNDE ALACLMGYPW PGNIRELRNE IARAVALSDG DEIQAQTFSL RVLHGQAGLA ASGQAADQAL SLPSSGTLSE RLDAIETMVL RETLLRHRWN KTHAARELGL SRVGLRGKMV RFGLEG
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