More than 300 homologs were found in PanDaTox collection
for query gene VC0395_A0725 on replicon NC_009457
Organism: Vibrio cholerae O395



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009457  VC0395_A0725  response regulator  100 
 
 
165 aa  339  1e-92  Vibrio cholerae O395  Bacteria  normal  0.836787  n/a   
 
 
-
 
NC_013456  VEA_003751  response regulator  68.48 
 
 
165 aa  241  3.9999999999999997e-63  Vibrio sp. Ex25  Bacteria  normal  0.562532  n/a   
 
 
-
 
NC_009783  VIBHAR_02626  hypothetical protein  67.88 
 
 
165 aa  238  2.9999999999999997e-62  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008709  Ping_2342  CheY-like chemotaxis protein, response regulator receiver  45.64 
 
 
157 aa  127  9.000000000000001e-29  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0482174 
 
 
-
 
NC_009831  Ssed_3209  putative chemotaxis protein CheY  42.48 
 
 
157 aa  126  1.0000000000000001e-28  Shewanella sediminis HAW-EB3  Bacteria  normal  0.62967  normal 
 
 
-
 
NC_008709  Ping_2340  CheY-like chemotaxis protein, response regulator receiver  42.95 
 
 
158 aa  120  9.999999999999999e-27  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0371017 
 
 
-
 
NC_010655  Amuc_0857  response regulator receiver protein  38.31 
 
 
159 aa  118  4.9999999999999996e-26  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.60456  normal 
 
 
-
 
NC_009457  VC0395_A0934  putative chemotaxis protein CheY  37.82 
 
 
158 aa  117  7.999999999999999e-26  Vibrio cholerae O395  Bacteria  normal  0.0812215  n/a   
 
 
-
 
NC_013456  VEA_003584  putative chemotaxis protein CheY  39.19 
 
 
157 aa  116  9.999999999999999e-26  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02545  hypothetical protein  36.6 
 
 
178 aa  112  3e-24  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003750  sensor histidine kinase  30.06 
 
 
646 aa  79.3  0.00000000000002  Vibrio sp. Ex25  Bacteria  normal  0.0232552  n/a   
 
 
-
 
NC_009783  VIBHAR_02625  hypothetical protein  30.06 
 
 
646 aa  79  0.00000000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A0726  response regulator  29.94 
 
 
651 aa  75.5  0.0000000000003  Vibrio cholerae O395  Bacteria  hitchhiker  0.000761968  n/a   
 
 
-
 
NC_008576  Mmc1_2496  two component, sigma54 specific, Fis family transcriptional regulator  33.58 
 
 
495 aa  72.4  0.000000000003  Magnetococcus sp. MC-1  Bacteria  normal  0.0534594  normal  0.148721 
 
 
-
 
NC_008687  Pden_3109  two component, sigma54 specific, Fis family transcriptional regulator  35.51 
 
 
493 aa  71.2  0.000000000006  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2363  response regulator receiver protein  30.3 
 
 
189 aa  68.9  0.00000000003  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013730  Slin_6098  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  30.97 
 
 
553 aa  67.8  0.00000000006  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3476  response regulator receiver modulated metal dependent phosphohydrolase  32.28 
 
 
479 aa  67.8  0.00000000007  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3757  two component, sigma54 specific, Fis family transcriptional regulator  28.85 
 
 
499 aa  67.4  0.00000000009  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2793  two-component response regulator  30.77 
 
 
154 aa  67.4  0.00000000009  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0292911 
 
 
-
 
NC_013093  Amir_2371  response regulator receiver protein  31.47 
 
 
382 aa  67  0.0000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0784161  n/a   
 
 
-
 
NC_007493  RSP_0507  HupR response regulator  33.57 
 
 
491 aa  67  0.0000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3473  response regulator receiver domain-containing protein  31.82 
 
 
823 aa  67  0.0000000001  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2158  two component, sigma54 specific, Fis family transcriptional regulator  33.57 
 
 
491 aa  66.6  0.0000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00791251  normal  0.142838 
 
 
-
 
NC_007298  Daro_0972  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  28.47 
 
 
994 aa  65.9  0.0000000002  Dechloromonas aromatica RCB  Bacteria  normal  0.172335  normal 
 
 
-
 
NC_010814  Glov_1569  response regulator receiver modulated metal dependent phosphohydrolase  32.34 
 
 
452 aa  66.2  0.0000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_3971  putative GAF sensor protein  33.09 
 
 
312 aa  65.9  0.0000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1342  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  31.25 
 
 
556 aa  65.9  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4588  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  33.82 
 
 
567 aa  65.9  0.0000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4317  response regulator receiver modulated GAF sensor protein  33.59 
 
 
317 aa  65.1  0.0000000004  'Nostoc azollae' 0708  Bacteria  normal  0.248315  n/a   
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  31.65 
 
 
1180 aa  65.1  0.0000000004  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_007298  Daro_3962  two component, sigma54 specific, Fis family transcriptional regulator  35.54 
 
 
495 aa  64.7  0.0000000005  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2808  two component, sigma54 specific, Fis family transcriptional regulator  31.58 
 
 
482 aa  65.1  0.0000000005  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2364  response regulator receiver protein  32.09 
 
 
806 aa  64.7  0.0000000006  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009457  VC0395_A0606  response regulator  31.16 
 
 
447 aa  64.7  0.0000000006  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_4817  response regulator receiver modulated serine phosphatase with GAF sensor  33.83 
 
 
553 aa  64.7  0.0000000006  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2450  putative two-component response regulator  43.04 
 
 
431 aa  63.9  0.0000000008  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3477  PAS/PAC sensor hybrid histidine kinase  31.82 
 
 
1465 aa  63.9  0.0000000009  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1179  sigma-54 factor, interaction region  28.85 
 
 
482 aa  63.9  0.0000000009  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0557788  normal 
 
 
-
 
NC_010581  Bind_1161  two component, sigma54 specific, Fis family transcriptional regulator  29.2 
 
 
496 aa  63.9  0.000000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.175427  normal 
 
 
-
 
NC_008781  Pnap_1956  two component, sigma54 specific, Fis family transcriptional regulator  35.25 
 
 
486 aa  63.9  0.000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.696783  normal 
 
 
-
 
NC_007973  Rmet_1542  response regulator receiver domain-containing protein  29.19 
 
 
309 aa  63.9  0.000000001  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000150385  normal  0.319028 
 
 
-
 
NC_013037  Dfer_0369  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  30.77 
 
 
567 aa  63.5  0.000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.106418 
 
 
-
 
NC_011004  Rpal_1171  two component, sigma54 specific, transcriptional regulator, Fis family  30.77 
 
 
482 aa  63.9  0.000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_3155  adenylate/guanylate cyclase  33.33 
 
 
1172 aa  63.5  0.000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  0.386213  hitchhiker  0.00095291 
 
 
-
 
NC_010814  Glov_1570  response regulator receiver protein  32.33 
 
 
210 aa  63.5  0.000000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2541  response regulator  34.31 
 
 
441 aa  62.4  0.000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_0662  response regulator receiver (CheY) and GAF modulated Serine phosphatase  33.59 
 
 
557 aa  62.8  0.000000002  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00161844  normal  0.0426655 
 
 
-
 
NC_013037  Dfer_2388  response regulator receiver protein  35.25 
 
 
154 aa  63.2  0.000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.319662 
 
 
-
 
NC_009429  Rsph17025_3364  hydrogenase accessory protein HypB  31.62 
 
 
492 aa  63.2  0.000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.224656 
 
 
-
 
NC_008609  Ppro_2723  putative PAS/PAC sensor protein  33.59 
 
 
285 aa  62.8  0.000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1895  response regulator receiver protein  31.06 
 
 
185 aa  62.4  0.000000003  Geobacter lovleyi SZ  Bacteria  normal  0.706146  n/a   
 
 
-
 
NC_007908  Rfer_4102  two component, sigma54 specific, Fis family transcriptional regulator  31.9 
 
 
475 aa  62  0.000000003  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3241  response regulator  33.33 
 
 
428 aa  62  0.000000004  Colwellia psychrerythraea 34H  Bacteria  normal  0.0406645  n/a   
 
 
-
 
NC_007298  Daro_0970  response regulator receiver  35.34 
 
 
438 aa  62  0.000000004  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1423  response regulator receiver (CheY) and GAF domain-containing protein  33.59 
 
 
315 aa  61.6  0.000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1525  ATP-binding region ATPase domain protein  30.47 
 
 
359 aa  61.6  0.000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.331233  normal  0.636632 
 
 
-
 
NC_013440  Hoch_5144  response regulator receiver protein  29.32 
 
 
150 aa  61.6  0.000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.495356  normal 
 
 
-
 
NC_010623  Bphy_4576  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  33.88 
 
 
553 aa  61.6  0.000000004  Burkholderia phymatum STM815  Bacteria  normal  0.494559  normal  0.955166 
 
 
-
 
NC_009512  Pput_2745  response regulator receiver protein  30.08 
 
 
456 aa  60.8  0.000000008  Pseudomonas putida F1  Bacteria  normal  0.862781  normal 
 
 
-
 
NC_002947  PP_2942  response regulator  30.08 
 
 
456 aa  60.1  0.00000001  Pseudomonas putida KT2440  Bacteria  normal  0.714666  normal  0.271158 
 
 
-
 
NC_013757  Gobs_2253  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  33.09 
 
 
552 aa  60.1  0.00000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.388258  n/a   
 
 
-
 
NC_013739  Cwoe_1190  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  33.58 
 
 
560 aa  60.1  0.00000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.716725  unclonable  0.0000120152 
 
 
-
 
NC_012880  Dd703_2727  response regulator receiver protein  31.16 
 
 
380 aa  60.1  0.00000002  Dickeya dadantii Ech703  Bacteria  normal  0.700678  n/a   
 
 
-
 
NC_009720  Xaut_2184  two component, sigma54 specific, Fis family transcriptional regulator  31.15 
 
 
497 aa  59.3  0.00000002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.682977  normal  0.229753 
 
 
-
 
NC_012918  GM21_2368  putative PAS/PAC sensor protein  27.82 
 
 
270 aa  59.3  0.00000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_2239  adenylate/guanylate cyclase  29.75 
 
 
1156 aa  59.7  0.00000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159061  normal 
 
 
-
 
NC_008228  Patl_1534  response regulator receiver protein  33.07 
 
 
439 aa  58.9  0.00000003  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1404  response regulator receiver protein  29.93 
 
 
154 aa  58.9  0.00000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1315  response regulator receiver sensor signal transduction histidine kinase  29.41 
 
 
365 aa  58.5  0.00000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4051  response regulator receiver modulated diguanylate cyclase  33.33 
 
 
360 aa  58.2  0.00000005  Haliangium ochraceum DSM 14365  Bacteria  normal  0.255257  normal  0.825864 
 
 
-
 
NC_007517  Gmet_3472  response regulator receiver domain-containing protein  29.2 
 
 
187 aa  58.2  0.00000005  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3735  signal transduction histidine kinase  30.95 
 
 
1183 aa  58.2  0.00000005  Cyanothece sp. PCC 7425  Bacteria  normal  0.709518  normal 
 
 
-
 
NC_013595  Sros_2038  pyridine nucleotide-disulphide oxidoreductase  35.29 
 
 
554 aa  58.2  0.00000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0938493  normal 
 
 
-
 
NC_008609  Ppro_2721  response regulator receiver protein  28.03 
 
 
188 aa  58.2  0.00000005  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4301  signal transduction histidine kinase  29.85 
 
 
2693 aa  58.2  0.00000006  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03496  response regulator  28.36 
 
 
434 aa  57.8  0.00000007  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2289  response regulator receiver protein  26.77 
 
 
135 aa  57.8  0.00000007  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_2839  GAF(s) sensor(s)-containing protein serine phosphatase  31.75 
 
 
557 aa  57.4  0.00000008  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_2100  response regulator receiver protein  29.69 
 
 
117 aa  57.8  0.00000008  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.515459 
 
 
-
 
NC_009664  Krad_0457  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  31.3 
 
 
578 aa  57.4  0.00000009  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.809625  normal  0.293491 
 
 
-
 
NC_002939  GSU2094  response regulator  29.46 
 
 
329 aa  56.6  0.0000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0885  response regulator receiver modulated metal dependent phosphohydrolase  29.23 
 
 
324 aa  57  0.0000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2012  two component, sigma54 specific, Fis family transcriptional regulator  27.82 
 
 
485 aa  56.6  0.0000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  28.89 
 
 
515 aa  55.8  0.0000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_007204  Psyc_0720  response regulator receiver, fis type  27.59 
 
 
312 aa  56.2  0.0000002  Psychrobacter arcticus 273-4  Bacteria  normal  0.935409  normal 
 
 
-
 
NC_007492  Pfl01_4550  response regulator receiver domain-containing protein  26.42 
 
 
451 aa  56.6  0.0000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.01769  normal 
 
 
-
 
NC_013131  Caci_6387  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase  33.62 
 
 
565 aa  55.8  0.0000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.958979  normal  0.0107564 
 
 
-
 
NC_007908  Rfer_1980  response regulator receiver modulated metal dependent phosphohydrolase  28.89 
 
 
449 aa  55.8  0.0000002  Rhodoferax ferrireducens T118  Bacteria  normal  0.247955  n/a   
 
 
-
 
NC_009921  Franean1_2259  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  33.33 
 
 
582 aa  56.2  0.0000002  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0983279 
 
 
-
 
NC_014158  Tpau_0406  response regulator receiver modulated FAD- dependent pyridine nucleotide-disulfide oxidoreductase  34.51 
 
 
557 aa  56.6  0.0000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0605  response regulator  27.5 
 
 
536 aa  55.5  0.0000003  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_3060  response regulator receiver  28.06 
 
 
410 aa  55.8  0.0000003  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1086  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  33.04 
 
 
554 aa  55.5  0.0000003  Mycobacterium sp. KMS  Bacteria  normal  0.667334  normal  0.027498 
 
 
-
 
NC_009077  Mjls_1097  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  33.04 
 
 
554 aa  55.5  0.0000003  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_1766  response regulator receiver domain-containing protein  27.5 
 
 
311 aa  55.5  0.0000003  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.143421 
 
 
-
 
NC_008146  Mmcs_1070  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  33.04 
 
 
554 aa  55.5  0.0000003  Mycobacterium sp. MCS  Bacteria  normal  0.970037  n/a   
 
 
-
 
NC_008726  Mvan_1371  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  33.05 
 
 
582 aa  55.1  0.0000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.858891  normal  0.520575 
 
 
-
 
NC_011146  Gbem_0639  response regulator receiver modulated metal dependent phosphohydrolase  31.25 
 
 
345 aa  55.1  0.0000004  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2189  multi-sensor hybrid histidine kinase  32.28 
 
 
628 aa  55.5  0.0000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0671838  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>