More than 300 homologs were found in PanDaTox collection
for query gene Smed_4016 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009620  Smed_4016  binding-protein-dependent transport systems inner membrane component  100 
 
 
302 aa  592  1e-168  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_0615  binding-protein-dependent transport systems inner membrane component  35.69 
 
 
296 aa  199  3.9999999999999996e-50  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_13130  binding-protein-dependent transport systems inner membrane component  37.22 
 
 
293 aa  177  2e-43  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0201  binding-protein-dependent transport systems inner membrane component  35.11 
 
 
294 aa  174  9.999999999999999e-43  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2715  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
289 aa  172  6.999999999999999e-42  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_014151  Cfla_1127  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
328 aa  171  1e-41  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.190953  hitchhiker  0.00155627 
 
 
-
 
NC_013526  Tter_2658  binding-protein-dependent transport systems inner membrane component  38.67 
 
 
309 aa  169  4e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.43514  n/a   
 
 
-
 
NC_011898  Ccel_1134  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
300 aa  167  2e-40  Clostridium cellulolyticum H10  Bacteria  normal  0.454536  n/a   
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  34.22 
 
 
305 aa  163  4.0000000000000004e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2695  binding-protein-dependent transport systems inner membrane component  35.34 
 
 
309 aa  160  2e-38  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.179346  n/a   
 
 
-
 
NC_013595  Sros_0295  ABC-type sugar transport system periplasmic component-like protein  35.88 
 
 
300 aa  161  2e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_6266  binding-protein-dependent transport systems inner membrane component  34.06 
 
 
320 aa  161  2e-38  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1686  binding-protein-dependent transport systems inner membrane component  35.27 
 
 
312 aa  159  6e-38  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.746865  normal 
 
 
-
 
NC_012850  Rleg_1307  binding-protein-dependent transport systems inner membrane component  34.66 
 
 
297 aa  159  7e-38  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  34.97 
 
 
313 aa  159  7e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_11550  carbohydrate ABC transporter membrane protein  36.09 
 
 
354 aa  158  8e-38  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal  0.0144146 
 
 
-
 
NC_012669  Bcav_2718  binding-protein-dependent transport systems inner membrane component  35.34 
 
 
330 aa  158  9e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.21265 
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
319 aa  158  9e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3816  binding-protein-dependent transport systems inner membrane component  35 
 
 
327 aa  158  1e-37  Polaromonas sp. JS666  Bacteria  normal  0.744275  normal 
 
 
-
 
NC_012850  Rleg_1867  binding-protein-dependent transport systems inner membrane component  35.14 
 
 
312 aa  158  1e-37  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  32.64 
 
 
309 aa  158  1e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
306 aa  156  3e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
317 aa  155  6e-37  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010001  Cphy_1530  binding-protein-dependent transport systems inner membrane component  34.38 
 
 
295 aa  155  7e-37  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_27710  permease component of ABC-type sugar transporter  34.11 
 
 
294 aa  154  1e-36  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
316 aa  154  2e-36  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
307 aa  153  2.9999999999999998e-36  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  32.99 
 
 
307 aa  153  2.9999999999999998e-36  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_008786  Veis_0945  binding-protein-dependent transport systems inner membrane component  36.5 
 
 
309 aa  152  5e-36  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_00850  carbohydrate ABC transporter membrane protein  37.32 
 
 
320 aa  152  5e-36  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_1618  binding-protein-dependent transport protein  36.16 
 
 
296 aa  152  5.9999999999999996e-36  Thermobifida fusca YX  Bacteria  normal  0.14282  n/a   
 
 
-
 
NC_011369  Rleg2_1219  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
297 aa  152  5.9999999999999996e-36  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3650  ABC-type sugar transport system periplasmic component-like protein  33.68 
 
 
315 aa  152  8e-36  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.0685768 
 
 
-
 
NC_007488  RSP_3942  ABC sugar transporter, inner membrane subunit  33.81 
 
 
321 aa  152  1e-35  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.108149  n/a   
 
 
-
 
NC_014165  Tbis_3250  binding-protein-dependent transporter inner membrane component  32.87 
 
 
310 aa  151  1e-35  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1026  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
300 aa  151  1e-35  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0038089  n/a   
 
 
-
 
NC_010816  BLD_1304  MalF-type ABC sugar transport systems permease component  31.18 
 
 
334 aa  150  2e-35  Bifidobacterium longum DJO10A  Bacteria  decreased coverage  0.00913134  n/a   
 
 
-
 
NC_008261  CPF_0557  ABC transporter, permease protein  35.4 
 
 
308 aa  150  3e-35  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  32.53 
 
 
321 aa  150  3e-35  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0541  ABC transporter, permease protein  35.4 
 
 
308 aa  150  4e-35  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2949  binding-protein-dependent transport systems inner membrane component  36.8 
 
 
302 aa  149  4e-35  Sinorhizobium medicae WSM419  Bacteria  normal  0.261022  normal 
 
 
-
 
NC_013595  Sros_3074  sugar ABC transporter permease protein  32.61 
 
 
307 aa  149  6e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.146884 
 
 
-
 
NC_013235  Namu_0185  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
315 aa  149  8e-35  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  34.62 
 
 
321 aa  147  2.0000000000000003e-34  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_011899  Hore_20510  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
290 aa  147  2.0000000000000003e-34  Halothermothrix orenii H 168  Bacteria  normal  0.0790749  n/a   
 
 
-
 
NC_012669  Bcav_3676  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
309 aa  146  4.0000000000000006e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2615  binding-protein-dependent transport systems inner membrane component  36.02 
 
 
307 aa  146  4.0000000000000006e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000296099  n/a   
 
 
-
 
NC_013172  Bfae_01540  carbohydrate ABC transporter membrane protein  33.08 
 
 
329 aa  146  4.0000000000000006e-34  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1290  binding-protein-dependent transport systems inner membrane component  32.23 
 
 
297 aa  146  5e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_4319  binding-protein-dependent transport systems inner membrane component  32.7 
 
 
312 aa  145  7.0000000000000006e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.778687  hitchhiker  0.00185272 
 
 
-
 
NC_013174  Jden_2071  binding-protein-dependent transport systems inner membrane component  34.69 
 
 
345 aa  145  9e-34  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.0000672298  normal 
 
 
-
 
NC_009767  Rcas_2545  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
316 aa  145  1e-33  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.637107  normal  0.115222 
 
 
-
 
NC_013739  Cwoe_5440  binding-protein-dependent transport systems inner membrane component  32.85 
 
 
329 aa  144  2e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.811614  normal 
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  29.3 
 
 
312 aa  144  2e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_014210  Ndas_0559  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
305 aa  144  2e-33  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  28.72 
 
 
313 aa  144  3e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_009523  RoseRS_2819  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
315 aa  144  3e-33  Roseiflexus sp. RS-1  Bacteria  normal  0.0308401  normal 
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  30.92 
 
 
291 aa  143  3e-33  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_010511  M446_1316  binding-protein-dependent transport systems inner membrane component  36.05 
 
 
318 aa  142  5e-33  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.106475 
 
 
-
 
NC_014210  Ndas_2346  binding-protein-dependent transport systems inner membrane component  32.66 
 
 
340 aa  142  6e-33  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.162139 
 
 
-
 
NC_013530  Xcel_2535  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
314 aa  142  7e-33  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3564  binding-protein-dependent transport systems inner membrane component  34.41 
 
 
316 aa  142  8e-33  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.264329 
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  32.76 
 
 
305 aa  142  8e-33  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  34.2 
 
 
316 aa  142  9e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2784  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
306 aa  142  9e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.390449  normal 
 
 
-
 
NC_013526  Tter_2506  binding-protein-dependent transport systems inner membrane component  36.98 
 
 
306 aa  141  9.999999999999999e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000185658  n/a   
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  28.37 
 
 
312 aa  141  9.999999999999999e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  30.14 
 
 
298 aa  142  9.999999999999999e-33  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2024  binding-protein-dependent transport systems inner membrane component  32.39 
 
 
303 aa  140  3e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000249122  n/a   
 
 
-
 
NC_009664  Krad_0973  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
305 aa  140  3e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0279283 
 
 
-
 
NC_012669  Bcav_2817  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
310 aa  140  3e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.822068  normal 
 
 
-
 
NC_013595  Sros_6550  putative transmembrane binding-protein-dependent transporter  34.3 
 
 
303 aa  140  3.9999999999999997e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.000015909 
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
311 aa  140  3.9999999999999997e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_010001  Cphy_3408  binding-protein-dependent transport systems inner membrane component  32.72 
 
 
293 aa  140  3.9999999999999997e-32  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00259426  n/a   
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  34.07 
 
 
287 aa  139  4.999999999999999e-32  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2143  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
318 aa  139  4.999999999999999e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2511  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
317 aa  139  4.999999999999999e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.10809  n/a   
 
 
-
 
NC_011886  Achl_3130  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
314 aa  139  6e-32  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.00699527 
 
 
-
 
NC_012669  Bcav_1699  binding-protein-dependent transport systems inner membrane component  35.16 
 
 
315 aa  139  7e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.258357  normal 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
283 aa  138  8.999999999999999e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6970  binding-protein-dependent transport systems inner membrane component  30.56 
 
 
305 aa  138  1e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0388505  normal 
 
 
-
 
NC_008541  Arth_1946  binding-protein-dependent transport systems inner membrane component  31.03 
 
 
320 aa  138  1e-31  Arthrobacter sp. FB24  Bacteria  normal  0.305055  n/a   
 
 
-
 
NC_008578  Acel_2048  binding-protein-dependent transport systems inner membrane component  32.23 
 
 
332 aa  137  1e-31  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0941  binding-protein-dependent transport systems inner membrane component  32.49 
 
 
313 aa  138  1e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.737632 
 
 
-
 
NC_012669  Bcav_0828  binding-protein-dependent transport systems inner membrane component  31.79 
 
 
316 aa  138  1e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.194369 
 
 
-
 
NC_012669  Bcav_2833  binding-protein-dependent transport systems inner membrane component  33.7 
 
 
319 aa  137  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0200859  normal 
 
 
-
 
NC_011661  Dtur_0382  binding-protein-dependent transport systems inner membrane component  30.42 
 
 
296 aa  137  2e-31  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_4197  binding-protein-dependent transport systems inner membrane component  32.86 
 
 
326 aa  137  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.979447  normal 
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  29.51 
 
 
316 aa  137  2e-31  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2763  binding-protein-dependent transport systems inner membrane component  30.11 
 
 
315 aa  137  2e-31  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  33.71 
 
 
300 aa  137  2e-31  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0796  binding-protein-dependent transport systems inner membrane component  31.88 
 
 
312 aa  137  3.0000000000000003e-31  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.633875  n/a   
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  31.72 
 
 
300 aa  136  3.0000000000000003e-31  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8235  ABC transporter, permease protein  31.23 
 
 
306 aa  136  4e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  29.43 
 
 
308 aa  136  5e-31  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
309 aa  136  5e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  31.71 
 
 
314 aa  135  6.0000000000000005e-31  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  30.99 
 
 
307 aa  135  7.000000000000001e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  31.38 
 
 
296 aa  135  8e-31  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_011661  Dtur_0438  binding-protein-dependent transport systems inner membrane component  29.49 
 
 
302 aa  135  8e-31  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000597022  n/a   
 
 
-
 
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