More than 300 homologs were found in PanDaTox collection
for query gene RSP_3942 on replicon NC_007488
Organism: Rhodobacter sphaeroides 2.4.1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007488  RSP_3942  ABC sugar transporter, inner membrane subunit  100 
 
 
321 aa  647    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.108149  n/a   
 
 
-
 
NC_009429  Rsph17025_3650  ABC-type sugar transport system periplasmic component-like protein  90.79 
 
 
315 aa  587  1e-167  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.0685768 
 
 
-
 
NC_013595  Sros_0295  ABC-type sugar transport system periplasmic component-like protein  59.59 
 
 
300 aa  353  2e-96  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_27710  permease component of ABC-type sugar transporter  48.61 
 
 
294 aa  268  1e-70  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0615  binding-protein-dependent transport systems inner membrane component  30.72 
 
 
296 aa  168  1e-40  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2817  binding-protein-dependent transport systems inner membrane component  33.55 
 
 
310 aa  163  4.0000000000000004e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.822068  normal 
 
 
-
 
NC_012848  Rleg_4872  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
310 aa  161  2e-38  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.181942  normal  0.51159 
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  31.39 
 
 
307 aa  161  2e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  36.03 
 
 
287 aa  159  4e-38  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  33.71 
 
 
295 aa  159  5e-38  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1304  MalF-type ABC sugar transport systems permease component  30.91 
 
 
334 aa  159  6e-38  Bifidobacterium longum DJO10A  Bacteria  decreased coverage  0.00913134  n/a   
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  36.57 
 
 
321 aa  159  6e-38  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  33.99 
 
 
309 aa  159  7e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  32.33 
 
 
309 aa  158  1e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
319 aa  158  1e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6585  lactose transport system (permease)  34.98 
 
 
306 aa  157  2e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  32.51 
 
 
299 aa  157  2e-37  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  34.18 
 
 
300 aa  156  5.0000000000000005e-37  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_03080  permease component of ABC-type sugar transporter  34.04 
 
 
322 aa  153  2.9999999999999998e-36  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal 
 
 
-
 
NC_011884  Cyan7425_3980  binding-protein-dependent transport systems inner membrane component  34.17 
 
 
299 aa  152  5.9999999999999996e-36  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.00655631 
 
 
-
 
NC_011899  Hore_20510  binding-protein-dependent transport systems inner membrane component  34.87 
 
 
290 aa  152  7e-36  Halothermothrix orenii H 168  Bacteria  normal  0.0790749  n/a   
 
 
-
 
NC_013235  Namu_1775  binding-protein-dependent transport systems inner membrane component  31.34 
 
 
309 aa  152  8.999999999999999e-36  Nakamurella multipartita DSM 44233  Bacteria  normal  0.114297  normal  0.0929805 
 
 
-
 
NC_009972  Haur_1151  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
314 aa  152  1e-35  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.59424  n/a   
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  34.88 
 
 
301 aa  150  2e-35  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_013526  Tter_2615  binding-protein-dependent transport systems inner membrane component  33.59 
 
 
307 aa  150  3e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000296099  n/a   
 
 
-
 
NC_011831  Cagg_2193  binding-protein-dependent transport systems inner membrane component  32.12 
 
 
306 aa  150  3e-35  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.692762  normal 
 
 
-
 
NC_008010  Dgeo_2695  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
309 aa  150  4e-35  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.179346  n/a   
 
 
-
 
NC_012669  Bcav_0941  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
313 aa  150  4e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.737632 
 
 
-
 
NC_013205  Aaci_0914  binding-protein-dependent transport systems inner membrane component  35.26 
 
 
310 aa  149  5e-35  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  32.76 
 
 
305 aa  149  5e-35  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
293 aa  149  7e-35  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
300 aa  148  1.0000000000000001e-34  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  31.91 
 
 
307 aa  148  1.0000000000000001e-34  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_009620  Smed_4016  binding-protein-dependent transport systems inner membrane component  33.81 
 
 
302 aa  148  1.0000000000000001e-34  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3848  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
320 aa  148  1.0000000000000001e-34  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0230008  normal  0.429544 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
307 aa  148  1.0000000000000001e-34  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_013171  Apre_1667  binding-protein-dependent transport systems inner membrane component  32.73 
 
 
296 aa  148  1.0000000000000001e-34  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.227806  n/a   
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
317 aa  147  2.0000000000000003e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
313 aa  147  2.0000000000000003e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0557  ABC transporter, permease protein  31.97 
 
 
308 aa  147  2.0000000000000003e-34  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0541  ABC transporter, permease protein  31.97 
 
 
308 aa  148  2.0000000000000003e-34  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3614  binding-protein-dependent transport systems inner membrane component  35.04 
 
 
287 aa  147  2.0000000000000003e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.484603  normal  0.727796 
 
 
-
 
NC_013172  Bfae_01820  permease component of ABC-type sugar transporter  31.65 
 
 
312 aa  147  3e-34  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1094  binding-protein-dependent transport systems inner membrane component  32.96 
 
 
307 aa  147  3e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009636  Smed_2314  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
310 aa  145  6e-34  Sinorhizobium medicae WSM419  Bacteria  normal  0.498676  normal  0.350334 
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  29.75 
 
 
293 aa  145  6e-34  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  34.26 
 
 
288 aa  145  9e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_010483  TRQ2_0115  binding-protein-dependent transport systems inner membrane component  30.63 
 
 
300 aa  145  9e-34  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0117  binding-protein-dependent transport systems inner membrane component  30.63 
 
 
300 aa  145  9e-34  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0201  binding-protein-dependent transport systems inner membrane component  34.56 
 
 
294 aa  145  1e-33  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2658  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
309 aa  145  1e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.43514  n/a   
 
 
-
 
NC_008699  Noca_0870  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
309 aa  145  1e-33  Nocardioides sp. JS614  Bacteria  normal  0.800905  n/a   
 
 
-
 
NC_012669  Bcav_2875  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
318 aa  145  1e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal  0.0272583 
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  30.37 
 
 
311 aa  144  2e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_014248  Aazo_4983  binding-protein-dependent transporter inner membrane protein  31.6 
 
 
310 aa  144  2e-33  'Nostoc azollae' 0708  Bacteria  normal  0.300856  n/a   
 
 
-
 
NC_007413  Ava_4638  binding-protein dependent transport system inner membrane protein  31.34 
 
 
308 aa  143  4e-33  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000000461706  normal  0.23331 
 
 
-
 
NC_012669  Bcav_0911  binding-protein-dependent transport systems inner membrane component  30.7 
 
 
315 aa  143  4e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.488788  normal 
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  32.76 
 
 
316 aa  143  4e-33  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8465  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
315 aa  143  4e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.511569  normal  0.0740219 
 
 
-
 
NC_010001  Cphy_3408  binding-protein-dependent transport systems inner membrane component  31.1 
 
 
293 aa  143  4e-33  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00259426  n/a   
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  30.25 
 
 
316 aa  142  5e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  30.53 
 
 
291 aa  143  5e-33  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  32.09 
 
 
306 aa  142  6e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
309 aa  142  6e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_013595  Sros_5408  carbohydrate ABC transporter membrane protein 1, CUT1 family  31.09 
 
 
305 aa  142  7e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0524  binding-protein-dependent transport systems inner membrane component  32.26 
 
 
303 aa  142  7e-33  Petrotoga mobilis SJ95  Bacteria  normal  0.693678  n/a   
 
 
-
 
NC_013521  Sked_15070  permease component of ABC-type sugar transporter  30.04 
 
 
311 aa  142  8e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0771026  normal 
 
 
-
 
NC_013595  Sros_6550  putative transmembrane binding-protein-dependent transporter  33.58 
 
 
303 aa  142  8e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.000015909 
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  32.43 
 
 
316 aa  142  9.999999999999999e-33  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_1315  ABC transporter, permease protein  31.32 
 
 
301 aa  142  9.999999999999999e-33  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009664  Krad_3565  binding-protein-dependent transport systems inner membrane component  30.45 
 
 
316 aa  141  9.999999999999999e-33  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.702273  normal  0.0136241 
 
 
-
 
NC_013411  GYMC61_1728  binding-protein-dependent transport systems inner membrane component  34.01 
 
 
299 aa  140  1.9999999999999998e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_2996  binding-protein-dependent transport systems inner membrane component  28.47 
 
 
295 aa  140  1.9999999999999998e-32  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000237295  n/a   
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  31.54 
 
 
294 aa  141  1.9999999999999998e-32  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_013411  GYMC61_2715  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
289 aa  140  3e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_4568  binding-protein-dependent transport systems inner membrane component  28.66 
 
 
352 aa  140  3e-32  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4453  binding-protein-dependent transport systems inner membrane component  34.72 
 
 
319 aa  140  3e-32  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2496  binding-protein-dependent transport systems inner membrane component  30.94 
 
 
311 aa  140  3e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1900  sugar ABC transporter, permease protein, putative  31.01 
 
 
314 aa  139  4.999999999999999e-32  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1635  sugar ABC transporter, permease  31.01 
 
 
314 aa  139  4.999999999999999e-32  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1637  binding-protein-dependent transport systems inner membrane component  30.96 
 
 
303 aa  139  6e-32  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0695484  n/a   
 
 
-
 
NC_011898  Ccel_1134  binding-protein-dependent transport systems inner membrane component  29.01 
 
 
300 aa  139  6e-32  Clostridium cellulolyticum H10  Bacteria  normal  0.454536  n/a   
 
 
-
 
NC_013521  Sked_07100  carbohydrate ABC transporter membrane protein  30.6 
 
 
318 aa  139  6e-32  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.790586  normal 
 
 
-
 
NC_007604  Synpcc7942_0526  ABC-type sugar transport systems permease components-like  30.99 
 
 
293 aa  138  1e-31  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2734  binding-protein-dependent transport systems inner membrane component  33.09 
 
 
308 aa  138  1e-31  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.172129  normal  0.124427 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  29.21 
 
 
283 aa  138  1e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_23840  carbohydrate ABC transporter membrane protein  33.54 
 
 
325 aa  137  2e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4750  binding-protein-dependent transport systems inner membrane component  30.56 
 
 
299 aa  137  2e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.62916  normal  0.701692 
 
 
-
 
NC_012669  Bcav_0828  binding-protein-dependent transport systems inner membrane component  28.86 
 
 
316 aa  137  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.194369 
 
 
-
 
NC_013947  Snas_3250  binding-protein-dependent transport systems inner membrane component  32.67 
 
 
294 aa  138  2e-31  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0540669  normal  0.0518644 
 
 
-
 
NC_013172  Bfae_29410  carbohydrate ABC transporter membrane protein  31.62 
 
 
322 aa  137  2e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  0.899558  n/a   
 
 
-
 
NC_010320  Teth514_1100  binding-protein-dependent transport systems inner membrane component  32.96 
 
 
300 aa  137  2e-31  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0131  binding-protein-dependent transport systems inner membrane component  33.88 
 
 
319 aa  137  3.0000000000000003e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.128042  n/a   
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  34.26 
 
 
317 aa  137  3.0000000000000003e-31  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011886  Achl_2661  binding-protein-dependent transport systems inner membrane component  30.18 
 
 
320 aa  136  4e-31  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010622  Bphy_2350  binding-protein-dependent transport systems inner membrane component  33.66 
 
 
317 aa  136  4e-31  Burkholderia phymatum STM815  Bacteria  normal  normal  0.143445 
 
 
-
 
NC_013172  Bfae_28370  carbohydrate ABC transporter membrane protein  30.45 
 
 
287 aa  136  4e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  0.096742  n/a   
 
 
-
 
NC_013174  Jden_0512  binding-protein-dependent transport systems inner membrane component  31.9 
 
 
318 aa  137  4e-31  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000000473727  hitchhiker  0.00124128 
 
 
-
 
NC_013172  Bfae_29020  carbohydrate ABC transporter membrane protein  31.7 
 
 
275 aa  136  4e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0295  binding-protein-dependent transport systems inner membrane component  30.26 
 
 
306 aa  136  4e-31  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0472746 
 
 
-
 
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