More than 300 homologs were found in PanDaTox collection
for query gene Phep_4244 on replicon NC_013061
Organism: Pedobacter heparinus DSM 2366



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013061  Phep_4244  response regulator receiver  100 
 
 		 120 aa  244  2e-64  Pedobacter heparinus DSM 2366  Bacteria  normal  0.231952  normal  1 
 
 
-
 
NC_013061  Phep_2657  response regulator receiver  33.88 
 
 		 121 aa  86.7  1e-16  Pedobacter heparinus DSM 2366  Bacteria  normal  0.970877  normal  0.494085 
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  38.39 
 
 		 234 aa  80.5  0.000000000000007  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_007760  Adeh_0616  response regulator receiver domain-containing protein  35.65 
 
 		 127 aa  80.5  0.000000000000008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.262604  n/a   
 
 
-
 
NC_011145  AnaeK_0650  response regulator receiver protein  35.65 
 
 		 127 aa  80.5  0.000000000000008  Anaeromyxobacter sp. K  Bacteria  normal  0.44923  n/a   
 
 
-
 
NC_011891  A2cp1_0641  response regulator receiver protein  35.65 
 
 		 127 aa  80.5  0.000000000000008  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013061  Phep_3508  response regulator receiver  36.44 
 
 		 119 aa  80.1  0.00000000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009675  Anae109_0660  response regulator receiver protein  35.65 
 
 		 127 aa  79.3  0.00000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0548407  normal  1 
 
 
-
 
NC_011884  Cyan7425_1062  response regulator receiver protein  33.33 
 
 		 120 aa  77.8  0.00000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  0.58489  hitchhiker  0.0000344775 
 
 
-
 
NC_009972  Haur_2161  adenylate/guanylate cyclase with GAF sensor(s)  36.04 
 
 		 1020 aa  76.3  0.0000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0428251  n/a   
 
 
-
 
NC_007643  Rru_A3206  response regulator receiver protein  33.61 
 
 		 126 aa  75.5  0.0000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.901142  n/a   
 
 
-
 
NC_008025  Dgeo_2199  response regulator receiver/SARP domain-containing protein  33.05 
 
 		 344 aa  75.5  0.0000000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  0.425276 
 
 
-
 
NC_011769  DvMF_0882  two component transcriptional regulator, winged helix family  30.63 
 
 		 230 aa  75.9  0.0000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.148935 
 
 
-
 
NC_013440  Hoch_5056  response regulator receiver protein  31.67 
 
 		 305 aa  75.9  0.0000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.749886 
 
 
-
 
NC_013172  Bfae_20650  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  33.03 
 
 		 231 aa  74.7  0.0000000000004  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0260682  n/a   
 
 
-
 
NC_013525  Tter_0790  two component, sigma54 specific, transcriptional regulator, Fis family  31.62 
 
 		 466 aa  74.3  0.0000000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013739  Cwoe_5515  response regulator receiver protein  33.33 
 
 		 134 aa  73.9  0.0000000000006  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_2296  response regulator receiver sensor signal transduction histidine kinase  31.4 
 
 		 394 aa  73.9  0.0000000000007  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_013522  Taci_0090  two component transcriptional regulator, winged helix family  30 
 
 		 228 aa  73.6  0.0000000000008  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_0059  response regulator receiver domain-containing protein  31.19 
 
 		 125 aa  73.6  0.0000000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  0.157498  normal  0.212271 
 
 
-
 
NC_007413  Ava_3776  response regulator receiver domain-containing protein  37.96 
 
 		 120 aa  73.2  0.000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  0.143561 
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  30.56 
 
 		 230 aa  73.2  0.000000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_013440  Hoch_4952  response regulator receiver protein  30 
 
 		 317 aa  72.8  0.000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_1224  two component transcriptional regulator, winged helix family  36.54 
 
 		 227 aa  72.8  0.000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0117785  hitchhiker  0.00926138 
 
 
-
 
NC_008751  Dvul_1911  two component transcriptional regulator  30.63 
 
 		 229 aa  73.2  0.000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  1  normal  0.258551 
 
 
-
 
NC_011145  AnaeK_4125  two component transcriptional regulator, winged helix family  30.56 
 
 		 230 aa  73.2  0.000000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.125271  n/a   
 
 
-
 
NC_011891  A2cp1_4151  two component transcriptional regulator, winged helix family  30.56 
 
 		 230 aa  73.2  0.000000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013422  Hneap_2266  two component transcriptional regulator PhoB, winged helix family  30.63 
 
 		 230 aa  72.4  0.000000000002  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_0415  two component transcriptional regulator  30.56 
 
 		 231 aa  72.4  0.000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  0.777838 
 
 
-
 
NC_008699  Noca_3695  response regulator receiver  31.19 
 
 		 236 aa  72.4  0.000000000002  Nocardioides sp. JS614  Bacteria  normal  0.795948  n/a   
 
 
-
 
NC_011146  Gbem_2384  response regulator receiver protein  33.33 
 
 		 123 aa  71.6  0.000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_007796  Mhun_1966  response regulator receiver domain-containing protein  38.6 
 
 		 121 aa  71.6  0.000000000003  Methanospirillum hungatei JF-1  Archaea  normal  1  normal  1 
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  33.33 
 
 		 231 aa  72  0.000000000003  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  34.23 
 
 		 239 aa  72  0.000000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_013739  Cwoe_0720  two component transcriptional regulator, winged helix family  34.82 
 
 		 224 aa  71.2  0.000000000004  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009483  Gura_3143  response regulator receiver protein  30.08 
 
 		 124 aa  71.6  0.000000000004  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_2429  response regulator receiver modulated metal dependent phosphohydrolase  33.88 
 
 		 480 aa  71.6  0.000000000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  0.129673 
 
 
-
 
NC_009483  Gura_0925  two component, sigma-54 specific, Fis family transcriptional regulator  31.62 
 
 		 500 aa  71.2  0.000000000005  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_1751  two component transcriptional regulator, winged helix family  33.62 
 
 		 234 aa  71.2  0.000000000005  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_011666  Msil_1887  adenylate/guanylate cyclase  36.7 
 
 		 403 aa  71.2  0.000000000005  Methylocella silvestris BL2  Bacteria  n/a    normal  0.522729 
 
 
-
 
NC_013440  Hoch_0280  response regulator receiver protein  34.55 
 
 		 295 aa  70.9  0.000000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.932912 
 
 
-
 
NC_007604  Synpcc7942_0095  two component transcriptional regulator  34.21 
 
 		 249 aa  70.9  0.000000000006  Synechococcus elongatus PCC 7942  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009921  Franean1_4329  two component transcriptional regulator  32.43 
 
 		 236 aa  70.5  0.000000000007  Frankia sp. EAN1pec  Bacteria  normal  0.077082  normal  1 
 
 
-
 
NC_010501  PputW619_0472  response regulator receiver protein  33.33 
 
 		 133 aa  70.5  0.000000000007  Pseudomonas putida W619  Bacteria  normal  0.418097  normal  1 
 
 
-
 
NC_013525  Tter_1098  two component transcriptional regulator, winged helix family  34.26 
 
 		 228 aa  70.5  0.000000000007  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  32.76 
 
 		 456 aa  70.5  0.000000000008  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  normal  0.0616674 
 
 
-
 
NC_013385  Adeg_1897  two component transcriptional regulator, winged helix family  34.82 
 
 		 229 aa  70.5  0.000000000008  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_1748  response regulator receiver  35.45 
 
 		 123 aa  70.1  0.000000000009  Nocardioides sp. JS614  Bacteria  normal  0.122601  n/a   
 
 
-
 
NC_011884  Cyan7425_4410  response regulator receiver protein  29.17 
 
 		 131 aa  70.1  0.000000000009  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  0.686937 
 
 
-
 
NC_002947  PP_5320  winged helix family two component transcriptional regulator  32.46 
 
 		 242 aa  69.3  0.00000000001  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.023746 
 
 
-
 
NC_010816  BLD_0005  response regulator  32.41 
 
 		 243 aa  69.7  0.00000000001  Bifidobacterium longum DJO10A  Bacteria  normal  0.201532  n/a   
 
 
-
 
NC_009654  Mmwyl1_4400  two component transcriptional regulator  35.14 
 
 		 236 aa  69.3  0.00000000001  Marinomonas sp. MWYL1  Bacteria  normal  0.998417  normal  1 
 
 
-
 
NC_009675  Anae109_2598  response regulator receiver protein  29.06 
 
 		 126 aa  69.7  0.00000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  0.123447 
 
 
-
 
NC_010501  PputW619_0154  two component transcriptional regulator  32.46 
 
 		 229 aa  69.3  0.00000000001  Pseudomonas putida W619  Bacteria  normal  1  normal  0.596099 
 
 
-
 
NC_007492  Pfl01_5606  two component transcriptional regulator  32.46 
 
 		 229 aa  69.7  0.00000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_1834  response regulator receiver protein  32.52 
 
 		 123 aa  69.7  0.00000000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00302805 
 
 
-
 
NC_007760  Adeh_2635  response regulator receiver domain-containing protein  26.05 
 
 		 131 aa  69.7  0.00000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0563539  n/a   
 
 
-
 
NC_009767  Rcas_3221  response regulator receiver modulated diguanylate cyclase  25.83 
 
 		 443 aa  69.7  0.00000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.0497788 
 
 
-
 
NC_008228  Patl_1053  two component transcriptional regulator  30.7 
 
 		 229 aa  69.7  0.00000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  32.43 
 
 		 231 aa  69.7  0.00000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_013235  Namu_4249  two component transcriptional regulator, winged helix family  32.14 
 
 		 225 aa  69.7  0.00000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  0.316157  normal  1 
 
 
-
 
NC_009976  P9211_01421  two-component response regulator  31.86 
 
 		 258 aa  69.7  0.00000000001  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  1  normal  0.341989 
 
 
-
 
NC_008576  Mmc1_2442  response regulator receiver protein  31.03 
 
 		 292 aa  69.3  0.00000000001  Magnetococcus sp. MC-1  Bacteria  normal  0.0259595  normal  1 
 
 
-
 
NC_009523  RoseRS_3924  response regulator receiver modulated diguanylate cyclase  25.83 
 
 		 443 aa  69.7  0.00000000001  Roseiflexus sp. RS-1  Bacteria  normal  0.350169  normal  1 
 
 
-
 
NC_011830  Dhaf_4841  response regulator receiver protein  29.2 
 
 		 118 aa  69.7  0.00000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.202718  n/a   
 
 
-
 
NC_011884  Cyan7425_3742  two component transcriptional regulator, winged helix family  35.09 
 
 		 263 aa  69.3  0.00000000002  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013235  Namu_4688  two component transcriptional regulator, winged helix family  30.56 
 
 		 252 aa  69.3  0.00000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_5477  phosphate regulon transcriptional regulatory protein PhoB  32.74 
 
 		 229 aa  69.3  0.00000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_5032  response regulator receiver:transcriptional regulatory protein, C-terminal  32.74 
 
 		 229 aa  69.3  0.00000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.330128 
 
 
-
 
NC_011145  AnaeK_0640  response regulator receiver protein  30.63 
 
 		 123 aa  69.3  0.00000000002  Anaeromyxobacter sp. K  Bacteria  normal  1  n/a   
 
 
-
 
NC_007498  Pcar_1409  two component signal transduction response regulator  32.08 
 
 		 123 aa  69.3  0.00000000002  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000120114  n/a   
 
 
-
 
NC_010322  PputGB1_5367  two component transcriptional regulator  32.46 
 
 		 229 aa  69.3  0.00000000002  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.400776 
 
 
-
 
NC_013037  Dfer_4011  two component transcriptional regulator, winged helix family  35.92 
 
 		 236 aa  69.3  0.00000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0268606  normal  1 
 
 
-
 
NC_009512  Pput_5228  two component transcriptional regulator  32.46 
 
 		 229 aa  69.3  0.00000000002  Pseudomonas putida F1  Bacteria  normal  0.661336  normal  0.450139 
 
 
-
 
NC_011891  A2cp1_0631  response regulator receiver protein  29.73 
 
 		 123 aa  68.6  0.00000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007955  Mbur_0695  response regulator receiver  31.82 
 
 		 170 aa  68.9  0.00000000002  Methanococcoides burtonii DSM 6242  Archaea  normal  0.412637  n/a   
 
 
-
 
NC_013721  HMPREF0424_0720  response regulator receiver domain protein  30.56 
 
 		 246 aa  69.3  0.00000000002  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.351492 
 
 
-
 
NC_008254  Meso_1347  response regulator receiver protein  31.15 
 
 		 123 aa  68.9  0.00000000002  Chelativorans sp. BNC1  Bacteria  normal  0.57835  n/a   
 
 
-
 
NC_013739  Cwoe_3240  two component transcriptional regulator, winged helix family  31.48 
 
 		 229 aa  68.9  0.00000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.713085  normal  0.151148 
 
 
-
 
NC_011884  Cyan7425_1423  response regulator receiver protein  34.21 
 
 		 119 aa  69.3  0.00000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.24081  normal  0.185499 
 
 
-
 
NC_013440  Hoch_2174  PAS/PAC sensor hybrid histidine kinase  30 
 
 		 633 aa  68.9  0.00000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.634157  normal  0.649523 
 
 
-
 
NC_014248  Aazo_5066  response regulator receiver modulated diguanylate cyclase  33.64 
 
 		 338 aa  68.9  0.00000000002  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_0588  two component transcriptional regulator  31.53 
 
 		 227 aa  68.9  0.00000000002  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000451147  n/a   
 
 
-
 
NC_013061  Phep_0174  response regulator receiver  33.9 
 
 		 130 aa  68.9  0.00000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_0842  response regulator receiver protein  27.78 
 
 		 390 aa  68.9  0.00000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.884409  normal  1 
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  29.66 
 
 		 308 aa  68.6  0.00000000003  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_3604  putative PAS/PAC sensor protein  27.78 
 
 		 619 aa  68.6  0.00000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.562878 
 
 
-
 
NC_009523  RoseRS_0161  response regulator receiver protein  32.17 
 
 		 132 aa  68.6  0.00000000003  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010803  Clim_0772  two component transcriptional regulator, winged helix family  31.48 
 
 		 233 aa  68.6  0.00000000003  Chlorobium limicola DSM 245  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_3298  response regulator receiver protein  27.5 
 
 		 121 aa  68.2  0.00000000003  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011884  Cyan7425_2947  multi-sensor signal transduction histidine kinase  29.66 
 
 		 503 aa  68.2  0.00000000003  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_1406  response regulator receiver protein  27.97 
 
 		 121 aa  68.6  0.00000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0894387  normal  1 
 
 
-
 
NC_007777  Francci3_0308  two component transcriptional regulator  33.03 
 
 		 239 aa  68.6  0.00000000003  Frankia sp. CcI3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013174  Jden_2051  two component transcriptional regulator, winged helix family  33.03 
 
 		 236 aa  68.6  0.00000000003  Jonesia denitrificans DSM 20603  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_4408  two component transcriptional regulator  31.58 
 
 		 229 aa  68.6  0.00000000003  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  0.0897949 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  29.66 
 
 		 308 aa  68.6  0.00000000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009616  Tmel_1838  two component transcriptional regulator  33.33 
 
 		 239 aa  68.6  0.00000000003  Thermosipho melanesiensis BI429  Bacteria  hitchhiker  0.00000194698  n/a   
 
 
-
 
NC_009664  Krad_3815  two component transcriptional regulator, winged helix family  28.33 
 
 		 225 aa  68.6  0.00000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0278114  normal  0.0118387 
 
 
-
 
NC_009456  VC0395_0455  sensor histidine kinase/response regulator LuxN  30.84 
 
 		 686 aa  68.6  0.00000000003  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_010676  Bphyt_7104  multi-sensor hybrid histidine kinase  31.93 
 
 		 1646 aa  68.2  0.00000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
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