More than 300 homologs were found in PanDaTox collection
for query gene Francci3_0308 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_0308  two component transcriptional regulator  100 
 
 
239 aa  475  1e-133  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6507  two component transcriptional regulator  78.95 
 
 
270 aa  358  5e-98  Frankia sp. EAN1pec  Bacteria  normal  0.0763131  normal  0.20607 
 
 
-
 
NC_009953  Sare_4064  two component transcriptional regulator  60.68 
 
 
233 aa  278  4e-74  Salinispora arenicola CNS-205  Bacteria  normal  0.98903  normal  0.0666639 
 
 
-
 
NC_009380  Strop_3686  response regulator receiver  60.26 
 
 
233 aa  277  1e-73  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0717  two component transcriptional regulator, winged helix family  58.65 
 
 
242 aa  275  5e-73  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00000387016 
 
 
-
 
NC_007333  Tfu_0257  response regulator receiver  59.65 
 
 
241 aa  273  2.0000000000000002e-72  Thermobifida fusca YX  Bacteria  normal  0.926332  n/a   
 
 
-
 
NC_013757  Gobs_4657  two component transcriptional regulator, winged helix family  58.33 
 
 
240 aa  271  6e-72  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_04130  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  59.03 
 
 
236 aa  269  2e-71  Micrococcus luteus NCTC 2665  Bacteria  normal  0.118973  n/a   
 
 
-
 
NC_007777  Francci3_0234  two component transcriptional regulator  60.09 
 
 
242 aa  269  2.9999999999999997e-71  Frankia sp. CcI3  Bacteria  normal  normal  0.925989 
 
 
-
 
NC_012669  Bcav_0840  two component transcriptional regulator, winged helix family  58.97 
 
 
241 aa  267  1e-70  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.214337  normal  0.533835 
 
 
-
 
NC_013521  Sked_31480  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  57.45 
 
 
239 aa  267  1e-70  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00376265  normal  0.556858 
 
 
-
 
NC_013530  Xcel_2937  two component transcriptional regulator, winged helix family  55.28 
 
 
243 aa  266  2e-70  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0578  two component transcriptional regulator, winged helix family  57.76 
 
 
244 aa  266  2e-70  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_4590  two component transcriptional regulator  58.33 
 
 
239 aa  266  2e-70  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4973  two component transcriptional regulator  58.33 
 
 
239 aa  266  2e-70  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_4678  two component transcriptional regulator  58.33 
 
 
239 aa  266  2e-70  Mycobacterium sp. KMS  Bacteria  normal  0.337028  normal  0.895878 
 
 
-
 
NC_008578  Acel_1449  two component transcriptional regulator  57.76 
 
 
246 aa  266  2.9999999999999995e-70  Acidothermus cellulolyticus 11B  Bacteria  normal  0.566781  normal 
 
 
-
 
NC_014165  Tbis_3276  winged helix family two component transcriptional regulator  58.75 
 
 
234 aa  264  8e-70  Thermobispora bispora DSM 43833  Bacteria  normal  0.208422  normal  0.192837 
 
 
-
 
NC_009338  Mflv_1581  two component transcriptional regulator  58.33 
 
 
238 aa  264  8.999999999999999e-70  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3620  two component transcriptional regulator, winged helix family  58.3 
 
 
239 aa  263  1e-69  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0253056  normal  0.477246 
 
 
-
 
NC_008541  Arth_0784  two component transcriptional regulator  58.33 
 
 
239 aa  263  1e-69  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5175  two component transcriptional regulator  58.33 
 
 
236 aa  264  1e-69  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_10772  two component system response transcriptional positive regulator phoP  57.02 
 
 
247 aa  263  3e-69  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.864575 
 
 
-
 
NC_013172  Bfae_07910  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  56.58 
 
 
239 aa  261  6.999999999999999e-69  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6588  two component transcriptional regulator  57.51 
 
 
229 aa  261  8e-69  Frankia sp. EAN1pec  Bacteria  normal  0.13217  normal 
 
 
-
 
NC_013595  Sros_8879  response regulator receiver protein  58.3 
 
 
235 aa  260  1e-68  Streptosporangium roseum DSM 43021  Bacteria  normal  0.103439  normal 
 
 
-
 
NC_013739  Cwoe_4508  two component transcriptional regulator, winged helix family  55.98 
 
 
231 aa  259  3e-68  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_21620  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  56.22 
 
 
238 aa  258  5.0000000000000005e-68  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.019443  normal  0.0473518 
 
 
-
 
NC_013235  Namu_4408  two component transcriptional regulator, winged helix family  56.65 
 
 
230 aa  258  7e-68  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0219  two component transcriptional regulator  55.7 
 
 
237 aa  254  7e-67  Salinispora arenicola CNS-205  Bacteria  normal  0.127265  hitchhiker  0.00333518 
 
 
-
 
NC_011886  Achl_0899  two component transcriptional regulator, winged helix family  58.77 
 
 
236 aa  254  1.0000000000000001e-66  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.383063 
 
 
-
 
NC_013595  Sros_8872  response regulator receiver protein  57.89 
 
 
234 aa  252  3e-66  Streptosporangium roseum DSM 43021  Bacteria  normal  0.347509  normal 
 
 
-
 
NC_013174  Jden_2051  two component transcriptional regulator, winged helix family  53.33 
 
 
236 aa  252  4.0000000000000004e-66  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4916  response regulator receiver protein  55.7 
 
 
233 aa  250  1e-65  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3036  two component transcriptional regulator, winged helix family  54.78 
 
 
273 aa  249  3e-65  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.106658  normal 
 
 
-
 
NC_010816  BLD_0005  response regulator  52.1 
 
 
243 aa  248  5e-65  Bifidobacterium longum DJO10A  Bacteria  normal  0.201532  n/a   
 
 
-
 
NC_013947  Snas_5144  two component transcriptional regulator, winged helix family  55.26 
 
 
236 aa  248  6e-65  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.204078  normal  0.858106 
 
 
-
 
NC_013441  Gbro_0822  response regulator receiver  53.04 
 
 
241 aa  248  7e-65  Gordonia bronchialis DSM 43247  Bacteria  normal  0.0530683  n/a   
 
 
-
 
NC_013721  HMPREF0424_0720  response regulator receiver domain protein  49.59 
 
 
246 aa  247  1e-64  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.351492 
 
 
-
 
NC_014151  Cfla_3340  two component transcriptional regulator, winged helix family  58.15 
 
 
258 aa  246  2e-64  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.0454745 
 
 
-
 
NC_014158  Tpau_3631  two component transcriptional regulator, winged helix family  52.84 
 
 
235 aa  245  4.9999999999999997e-64  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0321  two component transcriptional regulator  53.54 
 
 
406 aa  243  9.999999999999999e-64  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_2277  two component transcriptional regulator  54.42 
 
 
248 aa  242  3e-63  Salinispora arenicola CNS-205  Bacteria  normal  0.113906  normal  0.0109188 
 
 
-
 
NC_013124  Afer_0558  two component transcriptional regulator, winged helix family  52.65 
 
 
237 aa  243  3e-63  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_32700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  51.28 
 
 
271 aa  240  1e-62  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.442824  normal  0.485424 
 
 
-
 
NC_008699  Noca_3695  response regulator receiver  52.21 
 
 
236 aa  240  1e-62  Nocardioides sp. JS614  Bacteria  normal  0.795948  n/a   
 
 
-
 
NC_009380  Strop_2130  response regulator receiver  53.54 
 
 
252 aa  239  2.9999999999999997e-62  Salinispora tropica CNB-440  Bacteria  normal  0.539517  hitchhiker  0.00279069 
 
 
-
 
NC_014165  Tbis_3267  winged helix family two component transcriptional regulator  55.79 
 
 
229 aa  237  1e-61  Thermobispora bispora DSM 43833  Bacteria  normal  0.0891778  normal  0.213955 
 
 
-
 
NC_013093  Amir_0379  two component transcriptional regulator, winged helix family  51.54 
 
 
233 aa  227  1e-58  Actinosynnema mirum DSM 43827  Bacteria  normal  0.605912  n/a   
 
 
-
 
NC_009921  Franean1_6496  two component transcriptional regulator  52.84 
 
 
231 aa  227  2e-58  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.00132974  normal  0.338684 
 
 
-
 
NC_013947  Snas_5255  two component transcriptional regulator, winged helix family  53.1 
 
 
242 aa  221  6e-57  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0134474  normal 
 
 
-
 
NC_009565  TBFG_11051  two component system transcriptional regulator trcR  49.13 
 
 
257 aa  221  7e-57  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_5311  two component transcriptional regulator  48.76 
 
 
246 aa  221  9.999999999999999e-57  Frankia sp. EAN1pec  Bacteria  normal  0.554395  normal  0.310406 
 
 
-
 
NC_009565  TBFG_13797  two component transcriptional regulatory protein  50.22 
 
 
286 aa  218  7e-56  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.173423 
 
 
-
 
NC_009380  Strop_1418  response regulator receiver  51.32 
 
 
251 aa  217  2e-55  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0582944 
 
 
-
 
NC_008578  Acel_1595  two component transcriptional regulator  50.66 
 
 
227 aa  216  2.9999999999999998e-55  Acidothermus cellulolyticus 11B  Bacteria  normal  0.526383  normal  0.570373 
 
 
-
 
NC_013131  Caci_6147  two component transcriptional regulator, winged helix family  49.12 
 
 
244 aa  215  5.9999999999999996e-55  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.200947 
 
 
-
 
NC_013235  Namu_4688  two component transcriptional regulator, winged helix family  50 
 
 
252 aa  214  7e-55  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1724  two component transcriptional regulator, winged helix family  49.56 
 
 
243 aa  213  1.9999999999999998e-54  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2296  two component transcriptional regulator  47.79 
 
 
255 aa  213  1.9999999999999998e-54  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.398969  normal  0.240289 
 
 
-
 
NC_009338  Mflv_1887  two component transcriptional regulator  48.46 
 
 
231 aa  213  2.9999999999999995e-54  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.882564  normal  0.344123 
 
 
-
 
NC_008726  Mvan_4844  two component transcriptional regulator  47.58 
 
 
231 aa  212  4.9999999999999996e-54  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.312171 
 
 
-
 
NC_008146  Mmcs_3926  two component transcriptional regulator  50.44 
 
 
254 aa  211  7e-54  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_1384  two component transcriptional regulator  51.32 
 
 
252 aa  211  7e-54  Salinispora arenicola CNS-205  Bacteria  decreased coverage  0.00801111  normal  0.0620226 
 
 
-
 
NC_008705  Mkms_4000  two component transcriptional regulator  50.44 
 
 
254 aa  211  7e-54  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3941  two component transcriptional regulator  50.44 
 
 
254 aa  211  7e-54  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0990172 
 
 
-
 
NC_008726  Mvan_4429  two component transcriptional regulator  50.22 
 
 
250 aa  211  9e-54  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.133228  normal 
 
 
-
 
NC_011886  Achl_0804  two component transcriptional regulator, winged helix family  46.02 
 
 
246 aa  210  1e-53  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_0655  two component transcriptional regulator  46.9 
 
 
246 aa  210  1e-53  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_22060  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  45.13 
 
 
254 aa  207  1e-52  Micrococcus luteus NCTC 2665  Bacteria  normal  0.0729677  n/a   
 
 
-
 
NC_008146  Mmcs_4301  two component transcriptional regulator  47.58 
 
 
230 aa  206  2e-52  Mycobacterium sp. MCS  Bacteria  normal  0.681825  n/a   
 
 
-
 
NC_008705  Mkms_4387  two component transcriptional regulator  47.58 
 
 
230 aa  206  2e-52  Mycobacterium sp. KMS  Bacteria  normal  0.0316317  normal 
 
 
-
 
NC_009077  Mjls_4681  two component transcriptional regulator  47.58 
 
 
230 aa  206  2e-52  Mycobacterium sp. JLS  Bacteria  normal  normal  0.354926 
 
 
-
 
NC_009338  Mflv_2266  two component transcriptional regulator  50.44 
 
 
249 aa  206  3e-52  Mycobacterium gilvum PYR-GCK  Bacteria  decreased coverage  0.00896474  normal 
 
 
-
 
NC_009565  TBFG_10999  two component response transcriptional regulatory protein MprA  47.14 
 
 
230 aa  206  3e-52  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00000000188235  normal  0.671639 
 
 
-
 
NC_014158  Tpau_3286  two component transcriptional regulator, winged helix family  47.58 
 
 
228 aa  203  2e-51  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.167791  n/a   
 
 
-
 
NC_011729  PCC7424_2242  two component transcriptional regulator, winged helix family  44.54 
 
 
224 aa  202  4e-51  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.415885 
 
 
-
 
NC_011831  Cagg_1351  two component transcriptional regulator, winged helix family  46.49 
 
 
225 aa  202  4e-51  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00188361  unclonable  0.0000000206018 
 
 
-
 
NC_011884  Cyan7425_3411  two component transcriptional regulator, winged helix family  46.46 
 
 
224 aa  202  4e-51  Cyanothece sp. PCC 7425  Bacteria  normal  0.591115  normal 
 
 
-
 
NC_013525  Tter_1098  two component transcriptional regulator, winged helix family  46.49 
 
 
228 aa  201  6e-51  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010184  BcerKBAB4_4419  two component transcriptional regulator  43.1 
 
 
239 aa  201  6e-51  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0759  two component transcriptional regulator  43.86 
 
 
223 aa  201  6e-51  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00128917  n/a   
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  42.29 
 
 
232 aa  201  9e-51  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2290  two component transcriptional regulator  47.84 
 
 
224 aa  200  9.999999999999999e-51  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0208  two component transcriptional regulator, winged helix family  48.91 
 
 
238 aa  201  9.999999999999999e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6397  response regulator receiver protein  48.47 
 
 
237 aa  201  9.999999999999999e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.680662  normal  0.0804167 
 
 
-
 
NC_011772  BCG9842_B0539  DNA-binding response regulator PhoP  43.1 
 
 
239 aa  199  3e-50  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000130788 
 
 
-
 
NC_011725  BCB4264_A4699  DNA-binding response regulator PhoP  43.1 
 
 
239 aa  199  3e-50  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1823  two component transcriptional regulator, winged helix family  47.48 
 
 
241 aa  199  3e-50  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.506413  normal 
 
 
-
 
NC_013093  Amir_2632  two component transcriptional regulator, winged helix family  49.12 
 
 
229 aa  199  3.9999999999999996e-50  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4720  DNA-binding response regulator PhoP  42.67 
 
 
239 aa  198  7.999999999999999e-50  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4714  DNA-binding response regulator PhoP  42.67 
 
 
239 aa  197  7.999999999999999e-50  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS4484  DNA-binding response regulator PhoP  42.67 
 
 
239 aa  197  7.999999999999999e-50  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4319  alkaline phosphatase synthesis response regulator  42.67 
 
 
239 aa  197  7.999999999999999e-50  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4330  alkaline phosphatase synthesis response regulator  42.67 
 
 
239 aa  197  7.999999999999999e-50  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4833  DNA-binding response regulator PhoP  42.67 
 
 
239 aa  197  7.999999999999999e-50  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0982965  n/a   
 
 
-
 
NC_011773  BCAH820_4704  DNA-binding response regulator PhoP  42.67 
 
 
239 aa  197  7.999999999999999e-50  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000673192 
 
 
-
 
NC_007413  Ava_0615  two component transcriptional regulator  45.13 
 
 
228 aa  197  1.0000000000000001e-49  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0841359  normal  0.719107 
 
 
-
 
NC_009767  Rcas_2487  two component transcriptional regulator  46.9 
 
 
224 aa  196  2.0000000000000003e-49  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.431556  normal 
 
 
-
 
NC_007517  Gmet_3383  two component transcriptional regulator  44.05 
 
 
224 aa  197  2.0000000000000003e-49  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
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