More than 300 homologs were found in PanDaTox collection
for query gene Pden_0405 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008686  Pden_0405  histone family protein DNA-binding protein  100 
 
 
99 aa  194  3e-49  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.479786 
 
 
-
 
NC_007493  RSP_1388  DNA-binding protein HU, form N  79.79 
 
 
95 aa  150  8e-36  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.082303  n/a   
 
 
-
 
NC_009049  Rsph17029_0055  histone family protein DNA-binding protein  79.79 
 
 
95 aa  150  8e-36  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0808808  normal 
 
 
-
 
NC_009428  Rsph17025_2795  histone family protein DNA-binding protein  78.72 
 
 
95 aa  148  2e-35  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2801  histone-like DNA-binding protein  71.28 
 
 
97 aa  137  4.999999999999999e-32  Ruegeria sp. TM1040  Bacteria  normal  normal  0.821949 
 
 
-
 
NC_009952  Dshi_3288  DNA-binding protein HU  69.47 
 
 
96 aa  130  5e-30  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.36981  normal 
 
 
-
 
NC_007802  Jann_0336  histone-like DNA-binding protein  74.74 
 
 
96 aa  125  1.0000000000000001e-28  Jannaschia sp. CCS1  Bacteria  normal  normal  0.810596 
 
 
-
 
NC_007492  Pfl01_0984  histone-like DNA-binding protein  45.56 
 
 
93 aa  79.3  0.00000000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0082  histone-like DNA-binding protein  43.82 
 
 
98 aa  71.6  0.000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_2752  histone-like DNA-binding protein  46.67 
 
 
91 aa  71.2  0.000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2651  histone family protein DNA-binding protein  44.44 
 
 
92 aa  71.6  0.000000000004  Pseudomonas mendocina ymp  Bacteria  normal  0.532078  normal 
 
 
-
 
NC_010322  PputGB1_0981  histone family protein DNA-binding protein  42.22 
 
 
93 aa  69.7  0.00000000001  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0975  histone family protein DNA-binding protein  42.22 
 
 
93 aa  69.7  0.00000000001  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4242  histone family protein DNA-binding protein  42.22 
 
 
93 aa  69.7  0.00000000001  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1013  histone family protein DNA-binding protein  42.22 
 
 
93 aa  69.7  0.00000000001  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_12900  putative DNA binding protein  40.66 
 
 
93 aa  69.7  0.00000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.30545 
 
 
-
 
NC_011898  Ccel_2424  histone family protein DNA-binding protein  41.11 
 
 
91 aa  69.3  0.00000000002  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000000394497  n/a   
 
 
-
 
NC_009656  PSPA7_1168  putative DNA binding protein  40.66 
 
 
93 aa  68.9  0.00000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1266  DNA-binding protein HU family  42.22 
 
 
93 aa  67.8  0.00000000005  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2657  nucleoid protein Hbs  40 
 
 
91 aa  67  0.00000000009  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_007005  Psyr_1084  histone-like DNA-binding protein  41.11 
 
 
93 aa  66.6  0.0000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.66671 
 
 
-
 
NC_010803  Clim_0201  histone family protein DNA-binding protein  43.96 
 
 
91 aa  66.6  0.0000000001  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.000000429798  n/a   
 
 
-
 
NC_007519  Dde_0125  histone-like DNA-binding protein  41.94 
 
 
95 aa  66.6  0.0000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2724  histone-like DNA-binding protein  43.96 
 
 
90 aa  66.2  0.0000000001  Methylobacillus flagellatus KT  Bacteria  normal  0.032856  normal 
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  41.57 
 
 
91 aa  65.9  0.0000000002  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_007951  Bxe_A4504  DNA-binding protein HU-alpha  38.89 
 
 
92 aa  65.9  0.0000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.806931 
 
 
-
 
NC_010681  Bphyt_3933  histone family protein DNA-binding protein  38.89 
 
 
92 aa  65.9  0.0000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_3067  histone family protein DNA-binding protein  40 
 
 
92 aa  65.9  0.0000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0353619 
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  41.11 
 
 
90 aa  64.7  0.0000000004  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_003295  RSc2521  DNA-binding protein HU-beta  40.45 
 
 
94 aa  64.3  0.0000000005  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0944475  normal  0.0105947 
 
 
-
 
NC_012856  Rpic12D_2386  histone family protein DNA-binding protein  40.45 
 
 
94 aa  64.3  0.0000000005  Ralstonia pickettii 12D  Bacteria  normal  0.405821  normal 
 
 
-
 
NC_010682  Rpic_2793  histone family protein DNA-binding protein  40.45 
 
 
94 aa  64.3  0.0000000005  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0065  histone family protein DNA-binding protein  38.89 
 
 
92 aa  63.9  0.0000000006  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0066  histone family protein DNA-binding protein  38.89 
 
 
92 aa  63.9  0.0000000006  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3247  histone-like DNA-binding protein  38.89 
 
 
92 aa  63.9  0.0000000006  Burkholderia sp. 383  Bacteria  normal  normal  0.704477 
 
 
-
 
NC_008060  Bcen_0005  histone-like DNA-binding protein  38.89 
 
 
92 aa  63.9  0.0000000006  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.129264  n/a   
 
 
-
 
NC_008390  Bamb_0055  histone family protein DNA-binding protein  38.89 
 
 
92 aa  63.9  0.0000000006  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0065  histone family protein DNA-binding protein  38.89 
 
 
92 aa  63.9  0.0000000006  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0084  histone family protein DNA-binding protein  38.89 
 
 
92 aa  63.9  0.0000000006  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  41.76 
 
 
91 aa  63.5  0.0000000008  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  38.89 
 
 
90 aa  63.2  0.000000001  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_009080  BMA10247_2972  DNA-binding protein HU-alpha  37.78 
 
 
92 aa  63.2  0.000000001  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2913  DNA-binding protein HU, form B  37.78 
 
 
92 aa  63.2  0.000000001  Burkholderia mallei ATCC 23344  Bacteria  normal  0.5361  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3397  DNA-binding protein HU, form B  37.78 
 
 
92 aa  63.2  0.000000001  Burkholderia mallei SAVP1  Bacteria  normal  0.218557  n/a   
 
 
-
 
NC_009076  BURPS1106A_0004  DNA-binding protein HU-alpha  37.78 
 
 
92 aa  63.2  0.000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1584  histone family protein DNA-binding protein  38.89 
 
 
91 aa  63.5  0.000000001  Halorhodospira halophila SL1  Bacteria  normal  0.532726  n/a   
 
 
-
 
NC_009074  BURPS668_0004  DNA-binding protein HU-alpha  37.78 
 
 
92 aa  63.2  0.000000001  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1629  DNA-binding protein HU, form B  37.78 
 
 
92 aa  63.2  0.000000001  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  37.78 
 
 
90 aa  63.2  0.000000001  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_011691  PHATRDRAFT_16074  predicted protein  39.33 
 
 
90 aa  62.8  0.000000002  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.73937  n/a   
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  40.45 
 
 
90 aa  62.8  0.000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010627  Bphy_7326  histone family protein DNA-binding protein  38.46 
 
 
92 aa  62.4  0.000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.076405 
 
 
-
 
NC_007651  BTH_I0004  DNA-binding protein HU-alpha  37.78 
 
 
126 aa  62.8  0.000000002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008783  BARBAKC583_0550  DNA-binding protein HU-beta  37.78 
 
 
92 aa  62  0.000000002  Bartonella bacilliformis KC583  Bacteria  normal  0.169626  n/a   
 
 
-
 
NC_008554  Sfum_1430  histone family protein DNA-binding protein  40.45 
 
 
90 aa  62  0.000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.000153062  normal  0.144736 
 
 
-
 
NC_008554  Sfum_2107  histone family protein DNA-binding protein  40.45 
 
 
90 aa  62.8  0.000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.00000844989  hitchhiker  0.00906741 
 
 
-
 
NC_008639  Cpha266_0238  histone family protein DNA-binding protein  41.76 
 
 
91 aa  62  0.000000002  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  40.45 
 
 
90 aa  62  0.000000003  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_009513  Lreu_0765  nucleoid protein Hbs  40.91 
 
 
91 aa  61.6  0.000000003  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000296782  n/a   
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  37.78 
 
 
90 aa  61.6  0.000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_011769  DvMF_2799  histone family protein DNA-binding protein  43.33 
 
 
91 aa  61.2  0.000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011059  Paes_0293  histone family protein DNA-binding protein  39.56 
 
 
94 aa  61.2  0.000000004  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.416752  normal  0.0238993 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  38.89 
 
 
90 aa  60.8  0.000000005  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_012791  Vapar_4266  histone family protein DNA-binding protein  37.78 
 
 
93 aa  60.8  0.000000005  Variovorax paradoxus S110  Bacteria  normal  0.598481  n/a   
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  38.89 
 
 
90 aa  60.8  0.000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  38.89 
 
 
90 aa  60.8  0.000000005  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  38.89 
 
 
90 aa  60.8  0.000000005  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  38.89 
 
 
90 aa  60.8  0.000000005  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  38.89 
 
 
90 aa  60.8  0.000000005  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  38.89 
 
 
90 aa  60.8  0.000000005  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  38.89 
 
 
90 aa  60.8  0.000000005  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_009636  Smed_0875  histone family protein DNA-binding protein  37.78 
 
 
90 aa  60.8  0.000000005  Sinorhizobium medicae WSM419  Bacteria  normal  0.757232  normal 
 
 
-
 
NC_007519  Dde_2058  histone-like DNA-binding protein  41.57 
 
 
90 aa  60.8  0.000000006  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.954956  n/a   
 
 
-
 
NC_013223  Dret_1900  histone family protein DNA-binding protein  39.33 
 
 
90 aa  60.8  0.000000006  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0802524 
 
 
-
 
NC_002976  SERP1041  DNA-binding protein HU  38.2 
 
 
90 aa  60.5  0.000000007  Staphylococcus epidermidis RP62A  Bacteria  normal  0.436255  n/a   
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  38.2 
 
 
90 aa  60.5  0.000000007  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
NC_009487  SaurJH9_1530  histone family protein DNA-binding protein  38.2 
 
 
90 aa  60.5  0.000000007  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.277737  n/a   
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  43.48 
 
 
90 aa  59.7  0.00000001  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  43.48 
 
 
90 aa  59.7  0.00000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  40 
 
 
90 aa  60.1  0.00000001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  43.48 
 
 
90 aa  59.7  0.00000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  43.48 
 
 
90 aa  59.7  0.00000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_010002  Daci_2879  histone family protein DNA-binding protein  40 
 
 
90 aa  60.1  0.00000001  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2029  histone family protein DNA-binding protein  37.63 
 
 
95 aa  59.7  0.00000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009511  Swit_2320  histone family protein DNA-binding protein  37.78 
 
 
91 aa  59.7  0.00000001  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.0313993 
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  40 
 
 
90 aa  60.1  0.00000001  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  40 
 
 
90 aa  60.1  0.00000001  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  41.11 
 
 
90 aa  59.7  0.00000001  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  43.48 
 
 
90 aa  59.7  0.00000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_008740  Maqu_3758  histone family protein DNA-binding protein  38.2 
 
 
90 aa  59.7  0.00000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.639339  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  43.48 
 
 
90 aa  59.3  0.00000002  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  43.48 
 
 
90 aa  59.3  0.00000002  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  42.22 
 
 
90 aa  58.9  0.00000002  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_007604  Synpcc7942_2248  nucleoid protein Hbs  39.56 
 
 
91 aa  59.3  0.00000002  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.0990789 
 
 
-
 
NC_011830  Dhaf_0135  histone family protein DNA-binding protein  39.33 
 
 
91 aa  59.3  0.00000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00267128  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  37.78 
 
 
90 aa  59.3  0.00000002  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  37.36 
 
 
92 aa  58.9  0.00000002  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_008751  Dvul_2207  histone family protein DNA-binding protein  42.22 
 
 
91 aa  59.3  0.00000002  Desulfovibrio vulgaris DP4  Bacteria  normal  0.976216  normal  0.483194 
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  43.48 
 
 
90 aa  59.3  0.00000002  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_008751  Dvul_1364  histone family protein DNA-binding protein  41.57 
 
 
90 aa  58.9  0.00000002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
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