288 homologs were found in PanDaTox collection
for query gene Oter_1088 on replicon NC_010571
Organism: Opitutus terrae PB90-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010571  Oter_1088  HsdR family type I site-specific deoxyribonuclease  100 
 
 
1025 aa  2110    Opitutus terrae PB90-1  Bacteria  normal  0.0870888  normal 
 
 
-
 
NC_011060  Ppha_0743  type I site-specific deoxyribonuclease, HsdR family  64.46 
 
 
999 aa  1341    Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.575824  n/a   
 
 
-
 
NC_010682  Rpic_0447  type I site-specific deoxyribonuclease, HsdR family  66.34 
 
 
989 aa  1361    Ralstonia pickettii 12J  Bacteria  normal  0.926177  hitchhiker  0.0000000581329 
 
 
-
 
NC_007484  Noc_0448  Type I site-specific deoxyribonuclease HsdR  64.75 
 
 
872 aa  1135    Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0363122  n/a   
 
 
-
 
NC_011761  AFE_2381  type I restriction-modification system, R subunit  65.46 
 
 
1032 aa  1378    Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2012  type I site-specific deoxyribonuclease, HsdR family  65.46 
 
 
1032 aa  1378    Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1215  HsdR family type I site-specific deoxyribonuclease  66.47 
 
 
990 aa  1355    Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_0929  type I site-specific deoxyribonuclease, HsdR family  64.98 
 
 
990 aa  1335    Dickeya zeae Ech1591  Bacteria  normal  0.379173  n/a   
 
 
-
 
NC_008786  Veis_3553  HsdR family type I site-specific deoxyribonuclease  64.15 
 
 
984 aa  1315    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011061  Paes_2398  type I site-specific deoxyribonuclease, HsdR family  63.37 
 
 
1015 aa  1330    Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.632036  n/a   
 
 
-
 
NC_008576  Mmc1_0134  HsdR family type I site-specific deoxyribonuclease  61.37 
 
 
1015 aa  1273    Magnetococcus sp. MC-1  Bacteria  normal  normal  0.363012 
 
 
-
 
NC_009052  Sbal_3719  HsdR family type I site-specific deoxyribonuclease  60.04 
 
 
1023 aa  1262    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_1841  HsdR family type I site-specific deoxyribonuclease  35.04 
 
 
953 aa  533  1e-150  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_013037  Dfer_5242  type I site-specific deoxyribonuclease, HsdR family  34.57 
 
 
974 aa  518  1.0000000000000001e-145  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_0897  HsdR-like, putative type I restriction deoxyribonuclease  35.74 
 
 
1294 aa  513  1e-144  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_3349  type I restriction-modification system R subunit  34.28 
 
 
963 aa  493  1e-137  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.531995  normal  0.015033 
 
 
-
 
NC_002976  SERP2474  type I restriction-modification system, R subunit  35.21 
 
 
930 aa  473  1e-132  Staphylococcus epidermidis RP62A  Bacteria  normal  0.081777  n/a   
 
 
-
 
NC_009632  SaurJH1_0185  HsdR family type I site-specific deoxyribonuclease  32.97 
 
 
929 aa  474  1e-132  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0180  HsdR family type I site-specific deoxyribonuclease  32.97 
 
 
929 aa  474  1e-132  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.634319  n/a   
 
 
-
 
NC_012669  Bcav_0502  type I site-specific deoxyribonuclease, HsdR family  32.53 
 
 
1015 aa  442  9.999999999999999e-123  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.840857 
 
 
-
 
NC_013174  Jden_1501  type I site-specific deoxyribonuclease, HsdR family  32.7 
 
 
1034 aa  439  1e-121  Jonesia denitrificans DSM 20603  Bacteria  normal  0.573056  normal  0.735582 
 
 
-
 
NC_009634  Mevan_0082  HsdR family type I site-specific deoxyribonuclease  32.48 
 
 
1014 aa  431  1e-119  Methanococcus vannielii SB  Archaea  normal  0.0348133  n/a   
 
 
-
 
NC_010577  XfasM23_2179  HsdR family type I site-specific deoxyribonuclease  33.58 
 
 
1007 aa  427  1e-118  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2424  HsdR family type I site-specific deoxyribonuclease  31.95 
 
 
1016 aa  429  1e-118  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.831432  normal 
 
 
-
 
NC_013522  Taci_1543  type I site-specific deoxyribonuclease, HsdR family  30.66 
 
 
1033 aa  419  9.999999999999999e-116  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_1410  type I restriction enzyme EcoR124II R protein (R.EcoR124II)  33.02 
 
 
1031 aa  419  9.999999999999999e-116  Campylobacter concisus 13826  Bacteria  normal  0.643236  n/a   
 
 
-
 
NC_008699  Noca_1107  HsdR family type I site-specific deoxyribonuclease  31.66 
 
 
1013 aa  418  9.999999999999999e-116  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009707  JJD26997_1853  type I restriction enzyme EcoR124II R protein  30.54 
 
 
989 aa  413  1e-114  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_2271  type I restriction-modification system endonuclease  32.26 
 
 
1009 aa  416  1e-114  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1956  type I site-specific deoxyribonuclease, HsdR family protein  31.8 
 
 
1037 aa  400  9.999999999999999e-111  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.160894  n/a   
 
 
-
 
NC_011663  Sbal223_3473  type I site-specific deoxyribonuclease, HsdR family  31.99 
 
 
1037 aa  401  9.999999999999999e-111  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0775  HsdR family type I site-specific deoxyribonuclease  31.53 
 
 
1041 aa  392  1e-107  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3053  HsdR family type I site-specific deoxyribonuclease  32.45 
 
 
1038 aa  380  1e-104  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4396  HsdR family type I site-specific deoxyribonuclease  30.89 
 
 
1038 aa  374  1e-102  Flavobacterium johnsoniae UW101  Bacteria  normal  0.806316  n/a   
 
 
-
 
NC_008532  STER_0747  type I restriction-modification system restriction subunit  30.36 
 
 
996 aa  322  1.9999999999999998e-86  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_1913  type I site-specific deoxyribonuclease, HsdR family  31.63 
 
 
1039 aa  299  2e-79  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal  0.0328667 
 
 
-
 
NC_011898  Ccel_2726  type I site-specific deoxyribonuclease, HsdR family  31.01 
 
 
1041 aa  298  3e-79  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009036  Sbal_4384  HsdR family type I site-specific deoxyribonuclease  33.08 
 
 
1061 aa  288  2e-76  Shewanella baltica OS155  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01119  type I restriction enzyme, R subunit  31.42 
 
 
1174 aa  284  7.000000000000001e-75  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008573  Shewana3_4164  HsdR family type I site-specific deoxyribonuclease  32.28 
 
 
1076 aa  283  1e-74  Shewanella sp. ANA-3  Bacteria  normal  normal  0.0160364 
 
 
-
 
NC_010465  YPK_3674  HsdR family type I site-specific deoxyribonuclease  31.19 
 
 
1075 aa  282  2e-74  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_4084  HsdR family type I site-specific deoxyribonuclease  32.87 
 
 
1061 aa  281  5e-74  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_03160  type I site-specific deoxyribonuclease, HsdR family  30.33 
 
 
1077 aa  278  4e-73  Cryptobacterium curtum DSM 15641  Bacteria  normal  hitchhiker  0.00000000000937778 
 
 
-
 
NC_011830  Dhaf_3955  type I site-specific deoxyribonuclease, HsdR family  30.68 
 
 
1042 aa  273  1e-71  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3538  HsdR family type I site-specific deoxyribonuclease  29.68 
 
 
1082 aa  271  2.9999999999999997e-71  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0228194  n/a   
 
 
-
 
NC_008309  HS_0559  type I site-specific deoxyribonuclease, restriction subunit  29.9 
 
 
1066 aa  271  5e-71  Haemophilus somnus 129PT  Bacteria  normal  0.193671  n/a   
 
 
-
 
NC_010465  YPK_3666  Type I site-specific deoxyribonuclease  32.47 
 
 
881 aa  243  1e-62  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.616224  n/a   
 
 
-
 
NC_010816  BLD_1962  type I site-specific restriction-modification system R subunit  31.05 
 
 
1095 aa  204  5e-51  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_0616  HsdR family type I site-specific deoxyribonuclease  26.81 
 
 
1024 aa  172  3e-41  Methanococcus maripaludis C5  Archaea  normal  0.945786  n/a   
 
 
-
 
NC_008599  CFF8240_0985  type I site-specific deoxyribonuclease HsdR  24.74 
 
 
1023 aa  162  3e-38  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.271239  n/a   
 
 
-
 
NC_007484  Noc_0447  type I restriction-modification system endonuclease  48.78 
 
 
163 aa  161  5e-38  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.00337855  n/a   
 
 
-
 
NC_010581  Bind_2674  HsdR family type I site-specific deoxyribonuclease  24.26 
 
 
1027 aa  149  4.0000000000000006e-34  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_0948  HsdR family type I site-specific deoxyribonuclease  24.14 
 
 
1054 aa  145  4e-33  Psychrobacter cryohalolentis K5  Bacteria  normal  unclonable  0.0000568458 
 
 
-
 
NC_012917  PC1_0861  type I site-specific deoxyribonuclease, HsdR family  23.99 
 
 
1031 aa  145  4e-33  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4621  type I site-specific deoxyribonuclease, HsdR family  25.45 
 
 
1028 aa  145  5e-33  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.250071 
 
 
-
 
NC_009616  Tmel_0402  HsdR family type I site-specific deoxyribonuclease  23.86 
 
 
1055 aa  143  9.999999999999999e-33  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1156  Type I site-specific deoxyribonuclease HsdR  25.44 
 
 
974 aa  142  1.9999999999999998e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159677  normal 
 
 
-
 
NC_013216  Dtox_4202  type I site-specific deoxyribonuclease, HsdR family  26.19 
 
 
1034 aa  142  3.9999999999999997e-32  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_2281  type I site-specific deoxyribonuclease, HsdR family  24.22 
 
 
986 aa  140  2e-31  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.000865916 
 
 
-
 
NC_011884  Cyan7425_3081  type I site-specific deoxyribonuclease, HsdR family  24.9 
 
 
1027 aa  139  3.0000000000000003e-31  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2218  type I site-specific deoxyribonuclease, HsdR family  24.22 
 
 
975 aa  139  3.0000000000000003e-31  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013440  Hoch_2793  type I site-specific deoxyribonuclease, HsdR family  26.95 
 
 
1012 aa  139  4e-31  Haliangium ochraceum DSM 14365  Bacteria  normal  0.81193  normal 
 
 
-
 
NC_002967  TDE0366  type I restriction-modification system, R subunit  22.86 
 
 
1039 aa  137  9.999999999999999e-31  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2687  HsdR family type I site-specific deoxyribonuclease  25.76 
 
 
979 aa  137  9.999999999999999e-31  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0430  type I site-specific deoxyribonuclease, HsdR family  25.51 
 
 
1030 aa  136  1.9999999999999998e-30  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011901  Tgr7_1775  type I restriction-modification system restriction subunit  23.18 
 
 
1041 aa  132  2.0000000000000002e-29  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2344  HsdR family type I site-specific deoxyribonuclease  24.65 
 
 
1045 aa  129  4.0000000000000003e-28  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0184878 
 
 
-
 
NC_007575  Suden_0948  Type I site-specific deoxyribonuclease HsdR  23.95 
 
 
1030 aa  128  7e-28  Sulfurimonas denitrificans DSM 1251  Bacteria  hitchhiker  0.000221808  n/a   
 
 
-
 
NC_013165  Shel_17680  type I site-specific deoxyribonuclease, HsdR family  24.08 
 
 
1035 aa  125  4e-27  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0008  type I site-specific deoxyribonuclease, HsdR family  23.21 
 
 
1099 aa  124  9e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0986  HsdR family type I site-specific deoxyribonuclease  24.15 
 
 
1040 aa  124  9.999999999999999e-27  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2197  HsdR family type I site-specific deoxyribonuclease  23.54 
 
 
1063 aa  123  1.9999999999999998e-26  Shewanella baltica OS185  Bacteria  normal  0.511328  n/a   
 
 
-
 
NC_002977  MCA1893  type I restriction-modification system, R subunit  23.23 
 
 
1069 aa  122  3e-26  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0842  type I restriction-modification enzyme, R subunit  26.59 
 
 
967 aa  122  3.9999999999999996e-26  Brucella suis 1330  Bacteria  normal  0.156677  n/a   
 
 
-
 
NC_009524  PsycPRwf_1115  HsdR family type I site-specific deoxyribonuclease  24.39 
 
 
1107 aa  122  3.9999999999999996e-26  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0790  type I restriction-modification enzyme, R subunit  26.59 
 
 
967 aa  122  4.9999999999999996e-26  Brucella ovis ATCC 25840  Bacteria  normal  0.225053  n/a   
 
 
-
 
NC_004347  SO_0380  type I restriction-modification system, R subunit  23.22 
 
 
1033 aa  120  9.999999999999999e-26  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009943  Dole_0245  HsdR family type I site-specific deoxyribonuclease  24.07 
 
 
1038 aa  120  9.999999999999999e-26  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0017  HsdR family type I site-specific deoxyribonuclease  25.43 
 
 
1032 aa  120  9.999999999999999e-26  Methanococcus maripaludis C7  Archaea  normal  0.13213  hitchhiker  0.00259353 
 
 
-
 
NC_009483  Gura_4037  HsdR family type I site-specific deoxyribonuclease  24.49 
 
 
1084 aa  119  1.9999999999999998e-25  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0040  HsdR family type I site-specific deoxyribonuclease  25.54 
 
 
1032 aa  119  3.9999999999999997e-25  Methanococcus maripaludis C6  Archaea  normal  0.126055  n/a   
 
 
-
 
NC_011206  Lferr_0969  type I site-specific deoxyribonuclease, HsdR family  26.61 
 
 
973 aa  118  6.9999999999999995e-25  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.301095 
 
 
-
 
NC_011761  AFE_0841  type I restriction-modification system, R subunit  26.61 
 
 
973 aa  118  6.9999999999999995e-25  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1093  type I site-specific deoxyribonuclease, HsdR family  24.24 
 
 
974 aa  117  1.0000000000000001e-24  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1670  HsdR family type I site-specific deoxyribonuclease  23.49 
 
 
965 aa  116  2.0000000000000002e-24  Moorella thermoacetica ATCC 39073  Bacteria  normal  decreased coverage  0.0000414451 
 
 
-
 
NC_010003  Pmob_1898  HsdR family type I site-specific deoxyribonuclease  23.2 
 
 
981 aa  117  2.0000000000000002e-24  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0874  HsdR family type I site-specific deoxyribonuclease  24.82 
 
 
1041 aa  115  4.0000000000000004e-24  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1642  type I site-specific deoxyribonuclease, HsdR family  24.01 
 
 
1003 aa  115  6e-24  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1093  type I site-specific deoxyribonuclease, HsdR family  24.38 
 
 
1074 aa  114  1.0000000000000001e-23  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011059  Paes_0311  type I site-specific deoxyribonuclease, HsdR family  26.18 
 
 
1372 aa  113  2.0000000000000002e-23  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.220801 
 
 
-
 
NC_009939  Dgeo_3110  HsdR family type I site-specific deoxyribonuclease  27.32 
 
 
980 aa  112  5e-23  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_008787  CJJ81176_1534  type I restriction-modification enzyme, R subunit  23.75 
 
 
1031 aa  111  7.000000000000001e-23  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  0.0146067  n/a   
 
 
-
 
NC_011831  Cagg_1807  type I site-specific deoxyribonuclease, HsdR family  24.72 
 
 
982 aa  110  9.000000000000001e-23  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.71292 
 
 
-
 
NC_002977  MCA0838  type I restriction-modification system, R subunit  24.14 
 
 
1210 aa  109  2e-22  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1804  Type I site-specific deoxyribonuclease HsdR  23.42 
 
 
1068 aa  107  1e-21  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1308  Type I site-specific deoxyribonuclease HsdR  22.76 
 
 
1077 aa  103  1e-20  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.181512 
 
 
-
 
NC_013595  Sros_7554  HsdR family type I site-specific deoxyribonuclease  25.72 
 
 
1072 aa  103  1e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3986  HsdR family type I site-specific deoxyribonuclease  23.51 
 
 
1020 aa  103  2e-20  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1092  type I site-specific deoxyribonuclease, HsdR family  23.96 
 
 
965 aa  103  2e-20  Methanosphaerula palustris E1-9c  Archaea  normal  0.20335  normal  0.270177 
 
 
-
 
NC_007947  Mfla_1175  HsdR family type I site-specific deoxyribonuclease  26.88 
 
 
980 aa  102  3e-20  Methylobacillus flagellatus KT  Bacteria  normal  0.770188  normal 
 
 
-
 
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