198 homologs were found in PanDaTox collection
for query gene Gbem_3279 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011146  Gbem_3279  response regulator receiver and ANTAR domain protein  100 
 
 
191 aa  368  1e-101  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0970  response regulator receiver and ANTAR domain protein  95.29 
 
 
191 aa  322  2e-87  Geobacter sp. M21  Bacteria  n/a    normal  0.772223 
 
 
-
 
NC_007517  Gmet_0660  response regulator receiver/ANTAR domain-containing protein  46.24 
 
 
202 aa  148  5e-35  Geobacter metallireducens GS-15  Bacteria  normal  0.132289  normal  0.0166929 
 
 
-
 
NC_009483  Gura_1146  response regulator receiver/ANTAR domain-containing protein  44.92 
 
 
188 aa  146  2.0000000000000003e-34  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_002939  GSU2822  response regulator  42.78 
 
 
191 aa  141  4e-33  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_3459  response regulator receiver/ANTAR domain-containing protein  36.61 
 
 
205 aa  122  3e-27  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_3761  response regulator receiver and ANTAR domain protein  33.16 
 
 
194 aa  99.4  3e-20  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000015775  normal 
 
 
-
 
NC_007498  Pcar_2091  response regulator  29.73 
 
 
187 aa  93.2  2e-18  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1295  response regulator receiver/ANTAR domain-containing protein  43.7 
 
 
208 aa  93.2  2e-18  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.153579  normal  0.0128304 
 
 
-
 
NC_013385  Adeg_1890  response regulator receiver and ANTAR domain protein  34.72 
 
 
197 aa  92.8  3e-18  Ammonifex degensii KC4  Bacteria  normal  0.0366782  n/a   
 
 
-
 
NC_013595  Sros_2955  response regulator  36.9 
 
 
199 aa  90.5  1e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1110  response regulator receiver and ANTAR domain protein  32.79 
 
 
197 aa  90.5  1e-17  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0520878  n/a   
 
 
-
 
NC_009972  Haur_4203  response regulator receiver/ANTAR domain-containing protein  33.15 
 
 
195 aa  89.7  2e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.793788  n/a   
 
 
-
 
NC_009523  RoseRS_4102  response regulator receiver/ANTAR domain-containing protein  32.18 
 
 
194 aa  89.7  2e-17  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2047  response regulator receiver and ANTAR domain protein  33.14 
 
 
191 aa  88.6  5e-17  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000169009  normal 
 
 
-
 
NC_009253  Dred_2808  response regulator receiver/ANTAR domain-containing protein  32.58 
 
 
220 aa  87.8  9e-17  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.00041222  n/a   
 
 
-
 
NC_011831  Cagg_2933  response regulator receiver and ANTAR domain protein  28.72 
 
 
194 aa  86.7  2e-16  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0803562  normal  0.225953 
 
 
-
 
NC_009767  Rcas_3658  response regulator receiver/ANTAR domain-containing protein  31.61 
 
 
194 aa  85.9  3e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.568485 
 
 
-
 
NC_010718  Nther_0963  response regulator receiver and ANTAR domain protein  34.21 
 
 
191 aa  84.7  7e-16  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000231614  normal 
 
 
-
 
NC_013159  Svir_25990  response regulator with putative antiterminator output domain protein  33.51 
 
 
204 aa  84.7  8e-16  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2860  response regulator receiver and ANTAR domain protein  31.87 
 
 
214 aa  83.2  0.000000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  0.153721  n/a   
 
 
-
 
NC_013235  Namu_3061  response regulator receiver and ANTAR domain protein  31.89 
 
 
194 aa  82.8  0.000000000000002  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00113676  hitchhiker  0.000689676 
 
 
-
 
NC_013172  Bfae_14950  response regulator with putative antiterminator output domain  29.24 
 
 
215 aa  82  0.000000000000005  Brachybacterium faecium DSM 4810  Bacteria  normal  0.117628  n/a   
 
 
-
 
NC_014210  Ndas_3159  response regulator receiver and ANTAR domain protein  29.79 
 
 
212 aa  81.3  0.000000000000008  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3208  response regulator receiver and ANTAR domain protein  32.04 
 
 
200 aa  80.9  0.00000000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1151  response regulator receiver/ANTAR domain-containing protein  30.77 
 
 
195 aa  79  0.00000000000004  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_3021  response regulator receiver/ANTAR domain-containing protein  30.43 
 
 
210 aa  79  0.00000000000004  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1468  response regulator receiver and ANTAR domain-containing protein  30.22 
 
 
197 aa  79  0.00000000000004  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_3067  response regulator receiver/ANTAR domain-containing protein  30.43 
 
 
210 aa  79  0.00000000000004  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3036  response regulator receiver/ANTAR domain-containing protein  30.43 
 
 
210 aa  79  0.00000000000004  Mycobacterium sp. JLS  Bacteria  normal  0.222389  normal  0.216241 
 
 
-
 
NC_009565  TBFG_11642  two component system transcriptional regulator  30.98 
 
 
205 aa  79  0.00000000000004  Mycobacterium tuberculosis F11  Bacteria  normal  0.0378541  normal  0.634495 
 
 
-
 
NC_009338  Mflv_3575  response regulator receiver/ANTAR domain-containing protein  30.98 
 
 
229 aa  78.6  0.00000000000005  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.10936  normal  0.0183031 
 
 
-
 
NC_007333  Tfu_1181  response regulator receiver  31.18 
 
 
207 aa  78.6  0.00000000000006  Thermobifida fusca YX  Bacteria  normal  0.928438  n/a   
 
 
-
 
NC_012803  Mlut_11030  response regulator with putative antiterminator output domain  32.62 
 
 
198 aa  78.2  0.00000000000006  Micrococcus luteus NCTC 2665  Bacteria  normal  0.241703  n/a   
 
 
-
 
NC_013441  Gbro_2893  response regulator receiver  29.35 
 
 
206 aa  77.8  0.00000000000008  Gordonia bronchialis DSM 43247  Bacteria  normal  0.723289  n/a   
 
 
-
 
NC_009767  Rcas_3118  response regulator receiver/ANTAR domain-containing protein  29.28 
 
 
196 aa  77.8  0.00000000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_4357  response regulator receiver/ANTAR domain-containing protein  27.62 
 
 
198 aa  77.4  0.0000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.480943  n/a   
 
 
-
 
NC_013521  Sked_20250  response regulator with putative antiterminator output domain  29.24 
 
 
226 aa  77.8  0.0000000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0947543 
 
 
-
 
NC_010424  Daud_2028  response regulator receiver/ANTAR domain-containing protein  38.33 
 
 
192 aa  77.4  0.0000000000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000049817  n/a   
 
 
-
 
NC_014151  Cfla_1977  response regulator receiver and ANTAR domain protein  29.07 
 
 
227 aa  77.4  0.0000000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.239234  normal 
 
 
-
 
NC_009523  RoseRS_2361  response regulator receiver/ANTAR domain-containing protein  31.15 
 
 
196 aa  77.4  0.0000000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1223  response regulator receiver and ANTAR domain protein  28.65 
 
 
229 aa  76.6  0.0000000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.788892 
 
 
-
 
NC_013093  Amir_5540  response regulator receiver and ANTAR domain protein  32.43 
 
 
200 aa  76.6  0.0000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5687  response regulator receiver and ANTAR domain protein  30.65 
 
 
210 aa  75.9  0.0000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1506  response regulator receiver and ANTAR domain protein  27.91 
 
 
220 aa  75.9  0.0000000000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2840  response regulator receiver/ANTAR domain-containing protein  30.43 
 
 
213 aa  75.1  0.0000000000006  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0401204  normal 
 
 
-
 
NC_013169  Ksed_12950  response regulator with putative antiterminator output domain  32.12 
 
 
189 aa  74.7  0.0000000000009  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.22629  normal  0.269406 
 
 
-
 
NC_012669  Bcav_2208  response regulator receiver and ANTAR domain protein  28.06 
 
 
220 aa  73.9  0.000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1618  response regulator receiver/ANTAR domain-containing protein  29.02 
 
 
199 aa  73.9  0.000000000001  Frankia sp. CcI3  Bacteria  normal  0.144201  normal  0.292856 
 
 
-
 
NC_014158  Tpau_2483  response regulator receiver and ANTAR domain protein  29.67 
 
 
205 aa  73.2  0.000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0995  response regulator receiver and ANTAR domain protein  27.32 
 
 
190 aa  73.2  0.000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000736079  n/a   
 
 
-
 
NC_013216  Dtox_3764  response regulator receiver and ANTAR domain protein  28.49 
 
 
194 aa  73.2  0.000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.0425638  normal 
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  31.46 
 
 
207 aa  73.6  0.000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_008699  Noca_3018  response regulator receiver  30.39 
 
 
207 aa  72.8  0.000000000003  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3151  response regulator receiver  30.16 
 
 
206 aa  72  0.000000000005  Salinispora tropica CNB-440  Bacteria  normal  normal  0.332536 
 
 
-
 
NC_011831  Cagg_2517  response regulator receiver and ANTAR domain protein  35.34 
 
 
194 aa  71.6  0.000000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_0569  response regulator receiver and ANTAR domain protein  23.68 
 
 
194 aa  71.2  0.000000000009  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.000937079  n/a   
 
 
-
 
NC_009953  Sare_3378  response regulator receiver/ANTAR domain-containing protein  29.63 
 
 
206 aa  70.9  0.00000000001  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0248143 
 
 
-
 
NC_009654  Mmwyl1_2821  response regulator receiver/ANTAR domain-containing protein  29.41 
 
 
224 aa  69.7  0.00000000002  Marinomonas sp. MWYL1  Bacteria  normal  0.41961  normal  0.477248 
 
 
-
 
NC_013517  Sterm_0084  response regulator receiver and ANTAR domain protein  27.78 
 
 
242 aa  69.7  0.00000000003  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.682854  n/a   
 
 
-
 
NC_010424  Daud_2031  response regulator receiver/ANTAR domain-containing protein  27.47 
 
 
198 aa  69.7  0.00000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  unclonable  0.00000000027462  n/a   
 
 
-
 
NC_010003  Pmob_0297  response regulator receiver/ANTAR domain-containing protein  30.34 
 
 
195 aa  68.6  0.00000000006  Petrotoga mobilis SJ95  Bacteria  normal  0.719259  n/a   
 
 
-
 
NC_009664  Krad_2958  response regulator receiver and ANTAR domain protein  25.15 
 
 
229 aa  68.2  0.00000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.799557  normal  0.502809 
 
 
-
 
NC_008541  Arth_1694  response regulator receiver/ANTAR domain-containing protein  31.82 
 
 
201 aa  67  0.0000000002  Arthrobacter sp. FB24  Bacteria  normal  0.136848  n/a   
 
 
-
 
NC_010320  Teth514_2177  response regulator receiver/ANTAR domain-containing protein  33.64 
 
 
190 aa  66.6  0.0000000002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5028  response regulator receiver and ANTAR domain protein  31.74 
 
 
198 aa  67  0.0000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.181706  normal  0.0113639 
 
 
-
 
NC_013235  Namu_2394  response regulator receiver and ANTAR domain protein  28.07 
 
 
218 aa  66.6  0.0000000002  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00108275  hitchhiker  0.000509226 
 
 
-
 
NC_011886  Achl_1689  response regulator receiver and ANTAR domain protein  31.82 
 
 
201 aa  66.6  0.0000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000385738 
 
 
-
 
NC_011666  Msil_3768  response regulator receiver and ANTAR domain protein  26.92 
 
 
195 aa  66.2  0.0000000003  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013235  Namu_0678  response regulator receiver and ANTAR domain protein  31.02 
 
 
243 aa  65.9  0.0000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2035  response regulator receiver/ANTAR domain-containing protein  28.49 
 
 
199 aa  65.5  0.0000000005  Frankia sp. EAN1pec  Bacteria  normal  normal  0.480822 
 
 
-
 
NC_013124  Afer_1081  response regulator receiver and ANTAR domain protein  29.23 
 
 
203 aa  64.7  0.0000000007  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5900  two component response regulator  30.07 
 
 
195 aa  64.3  0.000000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2529  response regulator receiver/ANTAR domain-containing protein  27.84 
 
 
212 aa  64.3  0.000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1081  response regulator receiver/ANTAR domain-containing protein  29.61 
 
 
247 aa  63.2  0.000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4528  response regulator receiver/ANTAR domain-containing protein  28.06 
 
 
196 aa  63.2  0.000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_1051  response regulator receiver and ANTAR domain protein  27.59 
 
 
192 aa  61.6  0.000000006  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0203  response regulator receiver/ANTAR domain-containing protein  30.06 
 
 
190 aa  61.6  0.000000007  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1167  response regulator NasT  28.65 
 
 
198 aa  60.5  0.00000001  Burkholderia thailandensis E264  Bacteria  normal  0.136185  n/a   
 
 
-
 
NC_008261  CPF_0888  response regulator  31.4 
 
 
191 aa  60.1  0.00000002  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0238  response regulator receiver and ANTAR domain protein  25.99 
 
 
212 aa  60.1  0.00000002  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1455  response regulator receiver and ANTAR domain protein  26.81 
 
 
195 aa  60.1  0.00000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.770993 
 
 
-
 
NC_012856  Rpic12D_0259  response regulator receiver and ANTAR domain protein  25.99 
 
 
212 aa  59.7  0.00000002  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1632  response regulator receiver and ANTAR domain protein  26.09 
 
 
207 aa  59.3  0.00000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0623893 
 
 
-
 
NC_010814  Glov_0419  response regulator receiver and ANTAR domain protein  35.25 
 
 
182 aa  59.3  0.00000003  Geobacter lovleyi SZ  Bacteria  normal  0.069314  n/a   
 
 
-
 
NC_009253  Dred_2864  Fis family transcriptional regulator  26.34 
 
 
191 aa  59.3  0.00000003  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000561884  n/a   
 
 
-
 
NC_006349  BMAA1090  response regulator NasT  28.09 
 
 
198 aa  59.3  0.00000004  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0864919  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0246  response regulator NasT  28.09 
 
 
198 aa  59.3  0.00000004  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1211  response regulator receiver/ANTAR domain-containing protein  24.4 
 
 
194 aa  59.3  0.00000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008784  BMASAVP1_0087  response regulator/ANTAR domain-containing protein  28.09 
 
 
198 aa  59.3  0.00000004  Burkholderia mallei SAVP1  Bacteria  normal  0.792302  n/a   
 
 
-
 
NC_008835  BMA10229_0333  response regulator NasT  28.09 
 
 
198 aa  59.3  0.00000004  Burkholderia mallei NCTC 10229  Bacteria  normal  0.169956  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1670  response regulator/ANTAR domain-containing protein  28.09 
 
 
198 aa  59.3  0.00000004  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1255  response regulator/ANTAR domain-containing protein  28.09 
 
 
198 aa  59.3  0.00000004  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0422038  n/a   
 
 
-
 
NC_009075  BURPS668_A1759  response regulator/ANTAR domain-containing protein  28.09 
 
 
198 aa  58.9  0.00000005  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1132  response regulator receiver/ANTAR domain-containing protein  23.84 
 
 
194 aa  57.8  0.00000009  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.169793  n/a   
 
 
-
 
NC_003910  CPS_3317  putative response regulator NasT  25.95 
 
 
201 aa  57.4  0.0000001  Colwellia psychrerythraea 34H  Bacteria  normal  0.0234612  n/a   
 
 
-
 
NC_003295  RSc0382  response regulator transcription regulator protein  30.05 
 
 
195 aa  56.6  0.0000002  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.846144 
 
 
-
 
NC_010816  BLD_0739  putative response regulator  27.89 
 
 
261 aa  57  0.0000002  Bifidobacterium longum DJO10A  Bacteria  hitchhiker  0.000540248  n/a   
 
 
-
 
NC_007484  Noc_1494  response regulator  28.73 
 
 
194 aa  56.6  0.0000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.621557  n/a   
 
 
-
 
NC_010086  Bmul_4144  response regulator receiver/ANTAR domain-containing protein  25.68 
 
 
201 aa  56.6  0.0000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.071014 
 
 
-
 
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