More than 300 homologs were found in PanDaTox collection
for query gene Daro_0775 on replicon NC_007298
Organism: Dechloromonas aromatica RCB



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007298  Daro_0775  helix-turn-helix, Fis-type  100 
 
 
457 aa  926    Dechloromonas aromatica RCB  Bacteria  normal  normal  0.118214 
 
 
-
 
NC_011662  Tmz1t_2897  two component, sigma54 specific, transcriptional regulator, Fis family  60.04 
 
 
473 aa  548  1e-154  Thauera sp. MZ1T  Bacteria  normal  0.189439  n/a   
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  56.32 
 
 
458 aa  476  1e-133  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_009439  Pmen_2827  two component, sigma54 specific, Fis family transcriptional regulator  55.31 
 
 
470 aa  468  1.0000000000000001e-131  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0126149 
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  55.21 
 
 
451 aa  468  9.999999999999999e-131  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  55.21 
 
 
451 aa  468  9.999999999999999e-131  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  55.68 
 
 
451 aa  467  9.999999999999999e-131  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_007492  Pfl01_1534  two component, sigma-54 specific, Fis family transcriptional regulator  54.97 
 
 
463 aa  465  9.999999999999999e-131  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_50180  two-component response regulator  54.57 
 
 
473 aa  465  9.999999999999999e-131  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.966541  hitchhiker  0.00555849 
 
 
-
 
NC_004578  PSPTO_1956  sigma-54 dependent transcriptional regulator/response regulator FleR  55.12 
 
 
471 aa  464  1e-129  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.75595  n/a   
 
 
-
 
NC_009656  PSPA7_4272  two-component response regulator  54.7 
 
 
470 aa  461  9.999999999999999e-129  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_011138  MADE_02891  flagellar regulatory protein C  53.36 
 
 
445 aa  456  1e-127  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1322  sigma-54 factor, interaction region  53.47 
 
 
446 aa  452  1.0000000000000001e-126  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03164  hypothetical protein  51.63 
 
 
469 aa  448  1e-125  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_3459  helix-turn-helix, Fis-type  53.23 
 
 
471 aa  448  1e-125  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002813  flagellar regulatory protein FleQ  51.3 
 
 
469 aa  451  1e-125  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1500  flagellar regulatory protein C  52.86 
 
 
446 aa  446  1.0000000000000001e-124  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2310  sigma-54 dependent response regulator  49.79 
 
 
478 aa  446  1.0000000000000001e-124  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3049  two component, sigma54 specific, Fis family transcriptional regulator  50.67 
 
 
447 aa  447  1.0000000000000001e-124  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1364  two component, sigma54 specific, Fis family transcriptional regulator  52.9 
 
 
447 aa  444  1e-123  Shewanella loihica PV-4  Bacteria  normal  0.885668  normal 
 
 
-
 
NC_009901  Spea_1359  two component, sigma54 specific, Fis family transcriptional regulator  52.9 
 
 
450 aa  442  1e-123  Shewanella pealeana ATCC 700345  Bacteria  normal  0.594792  n/a   
 
 
-
 
NC_008700  Sama_2299  response regulator receiver protein  52.69 
 
 
446 aa  444  1e-123  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1616  two component, sigma54 specific, Fis family transcriptional regulator  52.44 
 
 
452 aa  442  1e-123  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1719  flagellar regulatory protein C  49.89 
 
 
479 aa  441  9.999999999999999e-123  Vibrio cholerae O395  Bacteria  normal  0.0473988  n/a   
 
 
-
 
NC_008345  Sfri_1180  two component, sigma54 specific, transcriptional regulator, Fis family protein  52.85 
 
 
449 aa  438  9.999999999999999e-123  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3450  two component, sigma54 specific, Fis family transcriptional regulator  51.32 
 
 
448 aa  435  1e-121  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3068  two component, sigma54 specific, Fis family transcriptional regulator  51.88 
 
 
452 aa  436  1e-121  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1435  two component, sigma54 specific, transcriptional regulator, Fis family  52.12 
 
 
447 aa  435  1e-121  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2938  two component, sigma54 specific, Fis family transcriptional regulator  52.12 
 
 
447 aa  435  1e-121  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1280  two component, sigma54 specific, Fis family transcriptional regulator  50.89 
 
 
446 aa  435  1e-121  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1340  two component, sigma54 specific, Fis family transcriptional regulator  50.67 
 
 
446 aa  435  1e-121  Shewanella sp. ANA-3  Bacteria  normal  normal  0.598769 
 
 
-
 
NC_007484  Noc_2361  two component sigma-54 specific, transcriptional regulator, Fis famliy  52.8 
 
 
449 aa  433  1e-120  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3070  two component, sigma54 specific, Fis family transcriptional regulator  51.89 
 
 
447 aa  433  1e-120  Shewanella baltica OS195  Bacteria  normal  normal  0.6792 
 
 
-
 
NC_009438  Sputcn32_2578  two component, sigma54 specific, Fis family transcriptional regulator  51.56 
 
 
446 aa  432  1e-120  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2928  two component, sigma54 specific, Fis family transcriptional regulator  51.89 
 
 
447 aa  433  1e-120  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3230  flagellar regulatory protein C  50.22 
 
 
446 aa  430  1e-119  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp1726  hypothetical protein  50 
 
 
437 aa  429  1e-119  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  50 
 
 
437 aa  430  1e-119  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_1347  two component, sigma54 specific, Fis family transcriptional regulator  50.44 
 
 
446 aa  431  1e-119  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2191  diguanylate cyclase/phosphodiesterase  48.09 
 
 
497 aa  416  9.999999999999999e-116  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  49.36 
 
 
481 aa  416  9.999999999999999e-116  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1444  two component, sigma54 specific, Fis family transcriptional regulator  49.67 
 
 
459 aa  414  1e-114  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1972  response regulator receiver protein  51.65 
 
 
455 aa  397  1e-109  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0500  two component, sigma54 specific, Fis family transcriptional regulator  46.98 
 
 
476 aa  372  1e-102  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_4240  two component, sigma54 specific, Fis family transcriptional regulator  44.4 
 
 
469 aa  361  2e-98  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  42.89 
 
 
463 aa  358  1.9999999999999998e-97  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  42.14 
 
 
461 aa  357  1.9999999999999998e-97  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  42.14 
 
 
461 aa  356  3.9999999999999996e-97  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  42.14 
 
 
461 aa  356  3.9999999999999996e-97  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  42.14 
 
 
461 aa  356  3.9999999999999996e-97  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  42.14 
 
 
461 aa  356  3.9999999999999996e-97  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  42.33 
 
 
461 aa  355  1e-96  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_011145  AnaeK_4373  two component, sigma54 specific, transcriptional regulator, Fis family  43.53 
 
 
469 aa  354  2e-96  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  40.86 
 
 
453 aa  354  2e-96  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_011891  A2cp1_4396  two component, sigma54 specific, transcriptional regulator, Fis family  43.53 
 
 
469 aa  354  2e-96  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  43.11 
 
 
461 aa  352  5e-96  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  41.76 
 
 
460 aa  351  1e-95  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0437  two component, sigma54 specific, Fis family transcriptional regulator  43.04 
 
 
490 aa  350  2e-95  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2942  two component, sigma54 specific, transcriptional regulator, Fis family  43.45 
 
 
451 aa  348  2e-94  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  42.61 
 
 
454 aa  347  4e-94  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0707  two component, sigma54 specific, Fis family transcriptional regulator  43.89 
 
 
469 aa  345  8e-94  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.112148  normal  0.322603 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  40.52 
 
 
451 aa  344  1e-93  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4389  two component, sigma54 specific, Fis family transcriptional regulator  42.33 
 
 
495 aa  345  1e-93  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.205713  normal  0.107293 
 
 
-
 
NC_013440  Hoch_3222  two component, sigma54 specific, transcriptional regulator, Fis family  43.86 
 
 
447 aa  345  1e-93  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0905113 
 
 
-
 
NC_011145  AnaeK_2310  two component, sigma54 specific, transcriptional regulator, Fis family  41.05 
 
 
469 aa  342  7e-93  Anaeromyxobacter sp. K  Bacteria  normal  0.294968  n/a   
 
 
-
 
NC_011891  A2cp1_2398  two component, sigma54 specific, transcriptional regulator, Fis family  41.05 
 
 
469 aa  342  7e-93  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.313034  n/a   
 
 
-
 
NC_007760  Adeh_1555  two component, sigma54 specific, Fis family transcriptional regulator  41.27 
 
 
467 aa  342  9e-93  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.21045  n/a   
 
 
-
 
NC_013525  Tter_0790  two component, sigma54 specific, transcriptional regulator, Fis family  40.59 
 
 
466 aa  341  1e-92  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  41 
 
 
457 aa  342  1e-92  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4454  transcriptional regulatory protein ZraR  41.92 
 
 
441 aa  341  2e-92  Escherichia coli SMS-3-5  Bacteria  normal  0.209341  hitchhiker  0.000519331 
 
 
-
 
NC_010658  SbBS512_E4497  transcriptional regulatory protein ZraR  41.92 
 
 
441 aa  340  2e-92  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000279415  n/a   
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  40.39 
 
 
466 aa  341  2e-92  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_011205  SeD_A4581  transcriptional regulatory protein ZraR  42.36 
 
 
441 aa  340  2.9999999999999998e-92  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_3989  two component, sigma54 specific, transcriptional regulator, Fis family  41.92 
 
 
441 aa  340  4e-92  Escherichia coli DH1  Bacteria  normal  0.716922  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  40.48 
 
 
473 aa  340  4e-92  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A4385  transcriptional regulatory protein ZraR  42.36 
 
 
441 aa  340  4e-92  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.712665 
 
 
-
 
NC_011083  SeHA_C4505  transcriptional regulatory protein ZraR  42.14 
 
 
441 aa  339  5.9999999999999996e-92  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.11324 
 
 
-
 
NC_009801  EcE24377A_4549  transcriptional regulatory protein ZraR  41.7 
 
 
441 aa  339  8e-92  Escherichia coli E24377A  Bacteria  hitchhiker  0.000369022  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  40.26 
 
 
473 aa  338  9e-92  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  40.26 
 
 
473 aa  338  9e-92  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
CP001509  ECD_03881  fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein  41.7 
 
 
441 aa  338  9.999999999999999e-92  Escherichia coli BL21(DE3)  Bacteria  normal  0.0124745  n/a   
 
 
-
 
NC_012892  B21_03834  hypothetical protein  41.7 
 
 
441 aa  338  9.999999999999999e-92  Escherichia coli BL21  Bacteria  normal  0.0118236  n/a   
 
 
-
 
NC_010468  EcolC_4021  transcriptional regulatory protein ZraR  41.7 
 
 
441 aa  338  9.999999999999999e-92  Escherichia coli ATCC 8739  Bacteria  normal  0.0128092  normal  0.0227655 
 
 
-
 
NC_009800  EcHS_A4238  transcriptional regulatory protein ZraR  41.7 
 
 
441 aa  337  1.9999999999999998e-91  Escherichia coli HS  Bacteria  normal  0.020936  n/a   
 
 
-
 
NC_009253  Dred_1312  two component, sigma54 specific, Fis family transcriptional regulator  39.56 
 
 
455 aa  337  1.9999999999999998e-91  Desulfotomaculum reducens MI-1  Bacteria  normal  0.502008  n/a   
 
 
-
 
NC_009675  Anae109_2442  two component, sigma54 specific, Fis family transcriptional regulator  42.33 
 
 
480 aa  337  3.9999999999999995e-91  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_001184  putative two-component response regulator  44.57 
 
 
443 aa  336  5e-91  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B4418  transcriptional regulatory protein ZraR  41.92 
 
 
441 aa  336  5.999999999999999e-91  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.298897  n/a   
 
 
-
 
NC_009675  Anae109_0965  two component, sigma54 specific, Fis family transcriptional regulator  42.7 
 
 
466 aa  336  5.999999999999999e-91  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.605384  normal 
 
 
-
 
NC_011769  DvMF_1993  two component, sigma54 specific, transcriptional regulator, Fis family  41.35 
 
 
486 aa  336  5.999999999999999e-91  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011353  ECH74115_5475  transcriptional regulatory protein ZraR  41.48 
 
 
441 aa  335  7e-91  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_04971  acetoacetate metabolism regulatory protein AtoC  44.62 
 
 
444 aa  335  1e-90  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_002939  GSU2041  sigma-54 dependent DNA-binding response regulator  43.01 
 
 
455 aa  334  2e-90  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A4507  transcriptional regulatory protein ZraR  41.27 
 
 
441 aa  334  2e-90  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0570238 
 
 
-
 
NC_009483  Gura_0085  two component, sigma-54 specific, Fis family transcriptional regulator  42.23 
 
 
452 aa  333  4e-90  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0109  two component Fis family transcriptional regulator  41.15 
 
 
466 aa  333  4e-90  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2092  two component, sigma54 specific, Fis family transcriptional regulator  38.6 
 
 
462 aa  333  4e-90  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.131918 
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  39.17 
 
 
454 aa  332  6e-90  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  39.78 
 
 
472 aa  332  6e-90  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  41.63 
 
 
470 aa  332  6e-90  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
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