More than 300 homologs were found in PanDaTox collection
for query gene Cphy_2239 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_2239  AraC family transcriptional regulator  100 
 
 
295 aa  610  9.999999999999999e-175  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1173  cupin 2 domain-containing protein  28.18 
 
 
316 aa  150  2e-35  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1596  transcriptional regulator, AraC family  33.22 
 
 
287 aa  135  9e-31  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2058  transcriptional regulator, AraC family  29.72 
 
 
286 aa  117  3e-25  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1355  transcriptional regulator, AraC family  27.7 
 
 
303 aa  114  2.0000000000000002e-24  Sebaldella termitidis ATCC 33386  Bacteria  decreased coverage  0.000000118066  n/a   
 
 
-
 
NC_004116  SAG1106  AraC family transcriptional regulator  29.82 
 
 
309 aa  111  2.0000000000000002e-23  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1047  AraC family transcriptional regulator  28.32 
 
 
285 aa  94.4  2e-18  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2890  transcriptional regulator, AraC family  25.29 
 
 
300 aa  92.8  6e-18  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.178075  n/a   
 
 
-
 
NC_013411  GYMC61_3305  two component transcriptional regulator, AraC family  37.74 
 
 
513 aa  84.3  0.000000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_2461  AraC family transcriptional regulator  27 
 
 
277 aa  83.6  0.000000000000004  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3156  AraC family transcriptional regulator  25.78 
 
 
283 aa  82.4  0.000000000000008  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1958  response regulator receiver protein  35.25 
 
 
530 aa  81.3  0.00000000000002  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000471781  n/a   
 
 
-
 
NC_011083  SeHA_C4643  DNA-binding transcriptional regulator MelR  23.19 
 
 
296 aa  80.5  0.00000000000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4561  DNA-binding transcriptional regulator MelR  23.19 
 
 
296 aa  80.5  0.00000000000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A4552  DNA-binding transcriptional regulator MelR  23.19 
 
 
296 aa  80.5  0.00000000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.316037  normal 
 
 
-
 
NC_011080  SNSL254_A4643  DNA-binding transcriptional regulator MelR  23.19 
 
 
296 aa  80.5  0.00000000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A4692  DNA-binding transcriptional regulator MelR  23.19 
 
 
296 aa  80.5  0.00000000000003  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.887715  normal 
 
 
-
 
NC_012793  GWCH70_3156  two component transcriptional regulator, AraC family  38.61 
 
 
515 aa  80.1  0.00000000000004  Geobacillus sp. WCH70  Bacteria  normal  0.949308  n/a   
 
 
-
 
NC_010001  Cphy_0579  two component AraC family transcriptional regulator  38.61 
 
 
531 aa  80.1  0.00000000000004  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03989  DNA-binding transcriptional dual regulator  22.64 
 
 
302 aa  79.3  0.00000000000006  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3874  transcriptional regulator, AraC family  22.64 
 
 
302 aa  79.3  0.00000000000006  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4672  DNA-binding transcriptional regulator MelR  22.64 
 
 
302 aa  79.3  0.00000000000006  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03950  hypothetical protein  22.64 
 
 
302 aa  79.3  0.00000000000006  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4359  DNA-binding transcriptional regulator MelR  22.64 
 
 
302 aa  79.3  0.00000000000006  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4615  DNA-binding transcriptional regulator MelR  22.64 
 
 
302 aa  79.3  0.00000000000006  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3909  DNA-binding transcriptional regulator MelR  22.64 
 
 
302 aa  79.3  0.00000000000006  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_4584  DNA-binding transcriptional regulator MelR  22.64 
 
 
302 aa  79.3  0.00000000000007  Escherichia coli SMS-3-5  Bacteria  normal  0.781071  normal 
 
 
-
 
NC_011353  ECH74115_5632  DNA-binding transcriptional regulator MelR  22.64 
 
 
302 aa  77.8  0.0000000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_2212  AraC family transcriptional regulator  22.26 
 
 
302 aa  77.8  0.0000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_1575  AraC family transcriptional regulator  25.37 
 
 
339 aa  77  0.0000000000003  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0464  AraC family transcriptional regulator  26.37 
 
 
259 aa  77  0.0000000000004  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3397  AraC family transcriptional regulator  24.24 
 
 
298 aa  76.6  0.0000000000004  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.00000000136095  n/a   
 
 
-
 
NC_013061  Phep_0737  helix-turn-helix- domain containing protein AraC type  26.55 
 
 
290 aa  76.6  0.0000000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.359471  normal 
 
 
-
 
NC_012034  Athe_2139  transcriptional regulator, AraC family  26.49 
 
 
282 aa  77  0.0000000000004  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.669919  n/a   
 
 
-
 
NC_007492  Pfl01_2641  AraC family transcriptional regulator  26.69 
 
 
301 aa  76.6  0.0000000000005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5280  transcriptional regulator, AraC family  23.55 
 
 
280 aa  75.9  0.0000000000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1402  transcriptional regulator, AraC family  22.96 
 
 
288 aa  75.9  0.0000000000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.283594  normal  0.8016 
 
 
-
 
NC_008391  Bamb_4202  AraC family transcriptional regulator  24.53 
 
 
319 aa  75.5  0.0000000000009  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_1165  AraC family transcriptional regulator  31.45 
 
 
278 aa  75.1  0.000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2813  helix-turn-helix- domain containing protein AraC type  25.09 
 
 
290 aa  75.5  0.000000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_1667  transcriptional regulator, AraC family  22.57 
 
 
281 aa  75.1  0.000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_2917  transcriptional regulator, AraC family  33.9 
 
 
118 aa  75.1  0.000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.932782  n/a   
 
 
-
 
NC_004578  PSPTO_2708  transcriptional activator MltR  26.04 
 
 
301 aa  74.7  0.000000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.215541  n/a   
 
 
-
 
NC_008061  Bcen_3546  AraC family transcriptional regulator  24.91 
 
 
319 aa  74.7  0.000000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.776433  n/a   
 
 
-
 
NC_008543  Bcen2424_4821  AraC family transcriptional regulator  24.91 
 
 
319 aa  74.7  0.000000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  0.535496  normal  0.116549 
 
 
-
 
NC_010515  Bcenmc03_5462  AraC family transcriptional regulator  24.91 
 
 
319 aa  74.7  0.000000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.139699 
 
 
-
 
NC_010524  Lcho_3197  DNA-binding transcriptional regulator AraC  32.87 
 
 
325 aa  74.7  0.000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0504834 
 
 
-
 
NC_010335  Caul_5108  AraC family transcriptional regulator  27.18 
 
 
316 aa  74.7  0.000000000002  Caulobacter sp. K31  Bacteria  normal  0.310256  normal 
 
 
-
 
NC_013132  Cpin_4378  transcriptional regulator, AraC family  24.73 
 
 
281 aa  73.9  0.000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0103943  hitchhiker  0.00146244 
 
 
-
 
NC_007005  Psyr_2441  helix-turn-helix, AraC type  26.04 
 
 
307 aa  73.6  0.000000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  decreased coverage  0.0002572  decreased coverage  0.000290212 
 
 
-
 
NC_007511  Bcep18194_B0883  AraC family transcriptional regulator  24.91 
 
 
322 aa  73.9  0.000000000003  Burkholderia sp. 383  Bacteria  normal  normal  0.172871 
 
 
-
 
NC_011898  Ccel_3249  two component transcriptional regulator, AraC family  37 
 
 
531 aa  74.3  0.000000000003  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4725  AraC family transcriptional regulator  24.15 
 
 
319 aa  73.9  0.000000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  0.70917  normal  0.0655004 
 
 
-
 
NC_009439  Pmen_4467  AraC family transcriptional regulator  25.28 
 
 
301 aa  73.9  0.000000000003  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013171  Apre_1137  transcriptional regulator, AraC family  37.62 
 
 
287 aa  73.9  0.000000000003  Anaerococcus prevotii DSM 20548  Bacteria  decreased coverage  0.000000101216  n/a   
 
 
-
 
NC_010001  Cphy_3697  two component AraC family transcriptional regulator  28.48 
 
 
517 aa  73.6  0.000000000004  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000611836  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3508  AraC family transcriptional regulator  37.14 
 
 
196 aa  72.8  0.000000000006  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0210792  n/a   
 
 
-
 
NC_013037  Dfer_3988  transcriptional regulator, AraC family  26.42 
 
 
291 aa  72.8  0.000000000007  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.00119398  normal  0.630817 
 
 
-
 
NC_010086  Bmul_3782  AraC family transcriptional regulator  24.53 
 
 
319 aa  72.4  0.000000000009  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.0502919 
 
 
-
 
NC_011772  BCG9842_B1459  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  36.19 
 
 
198 aa  71.6  0.00000000001  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.0000164097 
 
 
-
 
NC_009441  Fjoh_2340  helix-turn-helix domain-containing protein  23.7 
 
 
290 aa  72  0.00000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.581264  n/a   
 
 
-
 
NC_009656  PSPA7_2926  transcriptional regulator MtlR  24.06 
 
 
287 aa  71.6  0.00000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.795893  n/a   
 
 
-
 
NC_011898  Ccel_1003  transcriptional regulator, AraC family  22.87 
 
 
289 aa  71.6  0.00000000002  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_2113  two component AraC family transcriptional regulator  29.25 
 
 
548 aa  71.6  0.00000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_34440  transcriptional regulator MtlR  32.08 
 
 
301 aa  71.6  0.00000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.0000000000688741  normal  0.560291 
 
 
-
 
NC_011830  Dhaf_1809  transcriptional regulator, AraC family  25.32 
 
 
273 aa  71.2  0.00000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000000729156  n/a   
 
 
-
 
NC_008531  LEUM_1312  AraC family transcriptional regulator  29.79 
 
 
309 aa  71.2  0.00000000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4320  transcriptional regulator, AraC family  28.57 
 
 
427 aa  70.5  0.00000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2634  AraC family transcriptional regulator  30.05 
 
 
204 aa  70.9  0.00000000003  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3182  AraC family transcriptional regulator  22.31 
 
 
315 aa  70.5  0.00000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.000265571 
 
 
-
 
NC_010001  Cphy_3861  two component AraC family transcriptional regulator  35.92 
 
 
259 aa  70.1  0.00000000005  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5348  transcriptional regulator, AraC family  21.76 
 
 
291 aa  69.3  0.00000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.650952  normal  0.226075 
 
 
-
 
NC_010501  PputW619_2042  AraC family transcriptional regulator  23.51 
 
 
301 aa  69.3  0.00000000007  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_2113  two component transcriptional regulator, AraC family  33.67 
 
 
538 aa  69.3  0.00000000008  Clostridium cellulolyticum H10  Bacteria  normal  0.141697  n/a   
 
 
-
 
NC_010506  Swoo_0565  AraC family transcriptional regulator  23.55 
 
 
289 aa  69.3  0.00000000008  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_2057  AraC family transcriptional regulator  22.54 
 
 
293 aa  69.3  0.00000000008  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.227096  n/a   
 
 
-
 
NC_006274  BCZK3497  AraC family transcriptional regulator  36.19 
 
 
198 aa  68.9  0.00000000009  Bacillus cereus E33L  Bacteria  normal  0.27794  n/a   
 
 
-
 
NC_009831  Ssed_2344  AraC family transcriptional regulator  22.64 
 
 
291 aa  68.6  0.0000000001  Shewanella sediminis HAW-EB3  Bacteria  normal  0.415258  decreased coverage  0.000000160682 
 
 
-
 
NC_003909  BCE_3772  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  36.19 
 
 
198 aa  68.2  0.0000000001  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1626  AraC family transcriptional regulator  23.95 
 
 
292 aa  68.2  0.0000000001  Shewanella pealeana ATCC 700345  Bacteria  normal  0.954407  n/a   
 
 
-
 
NC_012034  Athe_1627  transcriptional regulator, AraC family  29.81 
 
 
273 aa  68.6  0.0000000001  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.00000116038  n/a   
 
 
-
 
NC_011725  BCB4264_A3840  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  35.24 
 
 
198 aa  68.9  0.0000000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29140  response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain  29.57 
 
 
279 aa  68.6  0.0000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_2412  transcriptional regulator, AraC family  28.92 
 
 
303 aa  68.6  0.0000000001  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_0102  two component transcriptional regulator, AraC family  32.08 
 
 
519 aa  68.6  0.0000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1205  AraC family transcriptional regulator  37.5 
 
 
440 aa  68.2  0.0000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.909691  normal 
 
 
-
 
NC_010468  EcolC_1935  AraC family transcriptional regulator  28.92 
 
 
303 aa  68.2  0.0000000001  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0147604 
 
 
-
 
NC_010320  Teth514_0399  response regulator receiver protein  27.78 
 
 
365 aa  68.6  0.0000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5827  helix-turn-helix domain-containing protein  28.1 
 
 
316 aa  68.6  0.0000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.112164  normal  0.283627 
 
 
-
 
NC_011899  Hore_15370  helix-turn-helix- domain containing protein AraC type  37.5 
 
 
415 aa  68.6  0.0000000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0937  transcriptional regulator, AraC family  32.32 
 
 
291 aa  68.2  0.0000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.440102  n/a   
 
 
-
 
CP001509  ECD_01665  predicted DNA-binding transcriptional regulator  28.92 
 
 
303 aa  68.2  0.0000000002  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1946  transcriptional regulator, AraC family  28.92 
 
 
303 aa  68.2  0.0000000002  Escherichia coli DH1  Bacteria  normal  0.192766  n/a   
 
 
-
 
NC_011658  BCAH187_A3788  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  35.24 
 
 
198 aa  67.4  0.0000000002  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0936  transcriptional regulator, AraC family  19.46 
 
 
289 aa  68.2  0.0000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.352467  normal 
 
 
-
 
NC_007643  Rru_A0919  two component AraC family transcriptional regulator  30.69 
 
 
356 aa  68.2  0.0000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3808  AraC family transcriptional regulator  33.9 
 
 
377 aa  68.2  0.0000000002  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0474  AraC family transcriptional regulator  35.35 
 
 
284 aa  67.8  0.0000000002  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1912  AraC family transcriptional regulator  28.92 
 
 
303 aa  68.2  0.0000000002  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1500  AraC family transcriptional regulator  28.92 
 
 
303 aa  68.2  0.0000000002  Escherichia coli SMS-3-5  Bacteria  normal  0.831009  normal  0.0187399 
 
 
-
 
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