| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3182 |
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| Symbol | |
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| ID | 6162965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3517521 |
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| End bp | 3518468 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641665957 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001792206 |
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| Protein GI | 171059857 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4753] Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.000265571 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGGAAGCA GCAGTCGCCG CAAGCTCACC CCGGAGTTCG AGCATGACCT CATCCGCGAT
CCGCGGCTCG GTTACGAGCC GACGGACGGC GCGGAGTTCG TGCGCTGCAT CGAGCACGGC
AGCCCGACGC CGCTCGAGCG CTGGCATTGC CATGACGAGT ACGAGCTGCA GCTGATCGTC
GGCGCGCGGG GGCGTGCCTT CGTGGGCGAC CATGTCGGCC ACTTCGAGCC CGGCCACCTC
GTGCTCACCG GGCCGCGCCT GCCGCACAAC TGGATCTCGA CCGACCTGCC GCCCGACGGC
CTGGGCGTGC GCAGCCTGGT GATCCAGTTC CGCGACGAGC CGCTGCGCGA CGGCATGCGC
GCCATCAAGG AGCTCGAGGA GATTCGGCCG CTGCTGGAGC GGGCGCGCCG GGGCATCGAG
TTCCTCGGCC TGAGCGACAG CGTCCGGGAC CGGTTCCATC GCATCAGGCG CAGCCACGGC
CTGGAGCGGT TTGCCGAGTT CGCCGCCTTG CTGTGCCTGC TCAATCGCTG CGAGGACTAT
CGCCTGCTGT CGTCCGACCA GGCGATCGTC GCCGGGCCGG CAGATGCCCG CTCGGCGATC
AGCCGGATCG TCGAGTACGT CAACGAAAGC TACGCCGAGA CGATGTCCGT CGCCGACGTT
GCGGCACGCG TCAACATGAG CGAGAGCAGC TTCTCGCGCT ATTTCAGCAA GGCCGCCGAC
AGCACGTTCA CCGCTTTCGT GAACCGCGTC CGGGTTCACA AGGCCTGCCA GCTGCTGATG
CACAGCGATC AACAGATCTC GAGCATCTGC TACGCCGTCG GCTTCAACAA CGTGGCCAAT
TTCAACCGGC GTTTTCGCGA AGTGAAGGGC ATGACGCCGA AGGAGTTTCG CCGTCAGAGC
ATGGACCGAC TGGGCGGCGA CAGTCCGCCC GGACGGCAGG GTCAGTGA
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| Protein sequence | MGSSSRRKLT PEFEHDLIRD PRLGYEPTDG AEFVRCIEHG SPTPLERWHC HDEYELQLIV
GARGRAFVGD HVGHFEPGHL VLTGPRLPHN WISTDLPPDG LGVRSLVIQF RDEPLRDGMR
AIKELEEIRP LLERARRGIE FLGLSDSVRD RFHRIRRSHG LERFAEFAAL LCLLNRCEDY
RLLSSDQAIV AGPADARSAI SRIVEYVNES YAETMSVADV AARVNMSESS FSRYFSKAAD
STFTAFVNRV RVHKACQLLM HSDQQISSIC YAVGFNNVAN FNRRFREVKG MTPKEFRRQS
MDRLGGDSPP GRQGQ
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