More than 300 homologs were found in PanDaTox collection
for query gene Veis_4653 on replicon NC_008786
Organism: Verminephrobacter eiseniae EF01-2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008786  Veis_4653  3-isopropylmalate dehydratase, large subunit  100 
 
 
468 aa  955    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1228  isopropylmalate isomerase large subunit  66.45 
 
 
469 aa  635    Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0896395 
 
 
-
 
NC_008740  Maqu_1565  isopropylmalate isomerase large subunit  64.96 
 
 
472 aa  639    Marinobacter aquaeolei VT8  Bacteria  normal  0.046679  n/a   
 
 
-
 
NC_002977  MCA2065  isopropylmalate isomerase large subunit  66.16 
 
 
470 aa  633  1e-180  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1812  isopropylmalate isomerase large subunit  66.02 
 
 
466 aa  629  1e-179  Halorhodospira halophila SL1  Bacteria  normal  0.364535  n/a   
 
 
-
 
NC_008463  PA14_23750  isopropylmalate isomerase large subunit  64.04 
 
 
474 aa  629  1e-179  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0168844 
 
 
-
 
NC_009656  PSPA7_2012  isopropylmalate isomerase large subunit  63.83 
 
 
474 aa  629  1e-179  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0300931  n/a   
 
 
-
 
NC_004578  PSPTO_2173  3-isopropylmalate dehydratase, large subunit  63.11 
 
 
475 aa  627  1e-178  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1705  isopropylmalate isomerase large subunit  63.3 
 
 
468 aa  626  1e-178  Methylobacillus flagellatus KT  Bacteria  normal  0.0785429  hitchhiker  0.00273209 
 
 
-
 
NC_012560  Avin_34280  isopropylmalate isomerase large subunit  64.47 
 
 
474 aa  624  1e-178  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1983  isopropylmalate isomerase large subunit  62.47 
 
 
474 aa  624  1e-177  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0478435 
 
 
-
 
NC_007484  Noc_2935  isopropylmalate isomerase large subunit  64.22 
 
 
469 aa  621  1e-177  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1343  3-isopropylmalate dehydratase, large subunit  63.71 
 
 
470 aa  621  1e-177  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.444862 
 
 
-
 
NC_010717  PXO_02613  isopropylmalate isomerase large subunit  62.98 
 
 
482 aa  619  1e-176  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1245  isopropylmalate isomerase large subunit  63.09 
 
 
470 aa  616  1e-175  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.923179  n/a   
 
 
-
 
NC_002947  PP_1985  isopropylmalate isomerase large subunit  62.05 
 
 
477 aa  613  9.999999999999999e-175  Pseudomonas putida KT2440  Bacteria  normal  0.682408  normal  0.0241842 
 
 
-
 
NC_009439  Pmen_2723  isopropylmalate isomerase large subunit  62.13 
 
 
475 aa  613  9.999999999999999e-175  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00243563  normal  0.0720472 
 
 
-
 
NC_011206  Lferr_0775  isopropylmalate isomerase large subunit  65.59 
 
 
470 aa  612  9.999999999999999e-175  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2164  isopropylmalate isomerase large subunit  63.44 
 
 
479 aa  612  9.999999999999999e-175  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.170701 
 
 
-
 
NC_007614  Nmul_A1921  isopropylmalate isomerase large subunit  64.09 
 
 
469 aa  612  9.999999999999999e-175  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.724454  n/a   
 
 
-
 
NC_010501  PputW619_1548  isopropylmalate isomerase large subunit  61.83 
 
 
477 aa  612  9.999999999999999e-175  Pseudomonas putida W619  Bacteria  normal  normal  0.272021 
 
 
-
 
NC_009512  Pput_3774  isopropylmalate isomerase large subunit  62.05 
 
 
477 aa  613  9.999999999999999e-175  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1516  isopropylmalate isomerase large subunit  61.83 
 
 
477 aa  613  9.999999999999999e-175  Pseudomonas putida GB-1  Bacteria  normal  0.11161  normal 
 
 
-
 
NC_011761  AFE_0624  isopropylmalate isomerase large subunit  65.59 
 
 
470 aa  612  9.999999999999999e-175  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1889  isopropylmalate isomerase large subunit  61.62 
 
 
472 aa  610  1e-173  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.169279  normal 
 
 
-
 
NC_007963  Csal_2453  isopropylmalate isomerase large subunit  64.68 
 
 
487 aa  609  1e-173  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.142412  n/a   
 
 
-
 
NC_010623  Bphy_4367  isopropylmalate isomerase large subunit  63.01 
 
 
469 aa  608  1e-173  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010513  Xfasm12_1542  isopropylmalate isomerase large subunit  62.13 
 
 
474 aa  608  1e-173  Xylella fastidiosa M12  Bacteria  normal  0.690084  n/a   
 
 
-
 
NC_009079  BMA10247_A0520  isopropylmalate isomerase large subunit  62.37 
 
 
469 aa  604  9.999999999999999e-173  Burkholderia mallei NCTC 10247  Bacteria  normal  0.643053  n/a   
 
 
-
 
NC_003295  RSc1990  isopropylmalate isomerase large subunit  61.72 
 
 
469 aa  605  9.999999999999999e-173  Ralstonia solanacearum GMI1000  Bacteria  normal  0.508129  normal  0.146532 
 
 
-
 
NC_012856  Rpic12D_1445  3-isopropylmalate dehydratase, large subunit  64.44 
 
 
480 aa  607  9.999999999999999e-173  Ralstonia pickettii 12D  Bacteria  normal  0.0303159  normal  0.651921 
 
 
-
 
NC_006349  BMAA1729  isopropylmalate isomerase large subunit  62.37 
 
 
469 aa  604  9.999999999999999e-173  Burkholderia mallei ATCC 23344  Bacteria  normal  0.405505  n/a   
 
 
-
 
NC_008784  BMASAVP1_1641  isopropylmalate isomerase large subunit  62.37 
 
 
469 aa  604  9.999999999999999e-173  Burkholderia mallei SAVP1  Bacteria  normal  0.159625  n/a   
 
 
-
 
NC_007347  Reut_A2314  isopropylmalate isomerase large subunit  62.37 
 
 
469 aa  605  9.999999999999999e-173  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1849  isopropylmalate isomerase large subunit  62.37 
 
 
469 aa  604  9.999999999999999e-173  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0604506  n/a   
 
 
-
 
NC_007511  Bcep18194_B2133  isopropylmalate isomerase large subunit  62.37 
 
 
469 aa  605  9.999999999999999e-173  Burkholderia sp. 383  Bacteria  normal  normal  0.0241304 
 
 
-
 
NC_007952  Bxe_B2889  isopropylmalate isomerase large subunit  62.8 
 
 
469 aa  607  9.999999999999999e-173  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4418  isopropylmalate isomerase large subunit  62.58 
 
 
469 aa  607  9.999999999999999e-173  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3579  isopropylmalate isomerase large subunit  62.58 
 
 
469 aa  607  9.999999999999999e-173  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.482085  normal  0.399315 
 
 
-
 
NC_009719  Plav_1423  3-isopropylmalate dehydratase, large subunit  60.77 
 
 
473 aa  606  9.999999999999999e-173  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_3949  isopropylmalate isomerase large subunit  62.58 
 
 
469 aa  607  9.999999999999999e-173  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.373197 
 
 
-
 
NC_010682  Rpic_1381  3-isopropylmalate dehydratase, large subunit  64.44 
 
 
480 aa  607  9.999999999999999e-173  Ralstonia pickettii 12J  Bacteria  normal  0.8068  normal  0.283608 
 
 
-
 
NC_010676  Bphyt_6850  isopropylmalate isomerase large subunit  62.37 
 
 
469 aa  604  9.999999999999999e-173  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.670748 
 
 
-
 
NC_010577  XfasM23_1485  isopropylmalate isomerase large subunit  62.13 
 
 
474 aa  607  9.999999999999999e-173  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2145  isopropylmalate isomerase large subunit  61.29 
 
 
469 aa  602  1.0000000000000001e-171  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4630  isopropylmalate isomerase large subunit  62.37 
 
 
477 aa  603  1.0000000000000001e-171  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1922  isopropylmalate isomerase large subunit  63.87 
 
 
467 aa  603  1.0000000000000001e-171  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A0778  isopropylmalate isomerase large subunit  62.37 
 
 
479 aa  604  1.0000000000000001e-171  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.000809283  n/a   
 
 
-
 
NC_012856  Rpic12D_1821  isopropylmalate isomerase large subunit  61.51 
 
 
469 aa  604  1.0000000000000001e-171  Ralstonia pickettii 12D  Bacteria  normal  0.626663  normal  0.539563 
 
 
-
 
NC_007650  BTH_II0672  isopropylmalate isomerase large subunit  62.15 
 
 
469 aa  603  1.0000000000000001e-171  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.00206744  n/a   
 
 
-
 
NC_009379  Pnuc_0764  isopropylmalate isomerase large subunit  61.67 
 
 
469 aa  603  1.0000000000000001e-171  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2475  isopropylmalate isomerase large subunit  61.72 
 
 
469 aa  602  1.0000000000000001e-171  Cupriavidus metallidurans CH34  Bacteria  normal  0.891959  normal  0.311686 
 
 
-
 
NC_007974  Rmet_4273  isopropylmalate isomerase large subunit  63.7 
 
 
477 aa  601  1.0000000000000001e-171  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009078  BURPS1106A_A2316  isopropylmalate isomerase large subunit  62.37 
 
 
469 aa  604  1.0000000000000001e-171  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2454  isopropylmalate isomerase large subunit  62.37 
 
 
469 aa  604  1.0000000000000001e-171  Burkholderia pseudomallei 668  Bacteria  normal  0.0296584  n/a   
 
 
-
 
NC_010531  Pnec_1057  isopropylmalate isomerase large subunit  61.67 
 
 
469 aa  603  1.0000000000000001e-171  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.960077  normal  0.219462 
 
 
-
 
NC_009512  Pput_5022  3-isopropylmalate dehydratase, large subunit  62.72 
 
 
467 aa  598  1e-170  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3340  isopropylmalate isomerase large subunit  61.72 
 
 
469 aa  599  1e-170  Burkholderia ambifaria AMMD  Bacteria  normal  0.184073  normal  0.862322 
 
 
-
 
NC_010552  BamMC406_3844  isopropylmalate isomerase large subunit  61.72 
 
 
469 aa  599  1e-170  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.777096 
 
 
-
 
NC_009524  PsycPRwf_1936  isopropylmalate isomerase large subunit  61.88 
 
 
478 aa  596  1e-169  Psychrobacter sp. PRwf-1  Bacteria  normal  0.962808  normal 
 
 
-
 
NC_007643  Rru_A1189  isopropylmalate isomerase large subunit  60.65 
 
 
472 aa  597  1e-169  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.672672  n/a   
 
 
-
 
NC_009484  Acry_2149  isopropylmalate isomerase large subunit  62.26 
 
 
466 aa  592  1e-168  Acidiphilium cryptum JF-5  Bacteria  normal  0.754808  n/a   
 
 
-
 
NC_010002  Daci_5235  isopropylmalate isomerase large subunit  61.57 
 
 
488 aa  590  1e-167  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.71536 
 
 
-
 
NC_007912  Sde_2086  isopropylmalate isomerase large subunit  61.36 
 
 
472 aa  589  1e-167  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1049  isopropylmalate isomerase large subunit  62.18 
 
 
502 aa  588  1e-167  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1675  isopropylmalate isomerase large subunit  61.65 
 
 
474 aa  587  1e-166  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007520  Tcr_0795  isopropylmalate isomerase large subunit  59.96 
 
 
474 aa  587  1e-166  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1719  3-isopropylmalate dehydratase, large subunit  61.8 
 
 
468 aa  587  1e-166  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2582  isopropylmalate isomerase large subunit  61.19 
 
 
473 aa  582  1.0000000000000001e-165  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3229  isopropylmalate isomerase large subunit  61.19 
 
 
473 aa  582  1.0000000000000001e-165  Acidovorax sp. JS42  Bacteria  normal  0.0550685  normal 
 
 
-
 
NC_011662  Tmz1t_3071  isopropylmalate isomerase large subunit  60.52 
 
 
468 aa  581  1.0000000000000001e-165  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1223  isopropylmalate isomerase large subunit  60.98 
 
 
473 aa  584  1.0000000000000001e-165  Acidovorax citrulli AAC00-1  Bacteria  normal  0.10034  normal  0.0157674 
 
 
-
 
NC_008781  Pnap_3039  isopropylmalate isomerase large subunit  59.5 
 
 
483 aa  581  1e-164  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_3608  isopropylmalate isomerase large subunit  59.49 
 
 
473 aa  580  1e-164  Polaromonas sp. JS666  Bacteria  normal  normal  0.629555 
 
 
-
 
NC_004310  BR1906  isopropylmalate isomerase large subunit  61.99 
 
 
469 aa  576  1.0000000000000001e-163  Brucella suis 1330  Bacteria  normal  0.276241  n/a   
 
 
-
 
NC_009505  BOV_1834  isopropylmalate isomerase large subunit  61.99 
 
 
469 aa  576  1.0000000000000001e-163  Brucella ovis ATCC 25840  Bacteria  normal  0.538456  n/a   
 
 
-
 
NC_011365  Gdia_3280  isopropylmalate isomerase large subunit  61.59 
 
 
467 aa  572  1.0000000000000001e-162  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.215534  normal 
 
 
-
 
NC_007298  Daro_0861  isopropylmalate isomerase large subunit  63.07 
 
 
468 aa  571  1.0000000000000001e-162  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.00000139037  hitchhiker  0.0000137935 
 
 
-
 
NC_012791  Vapar_1422  isopropylmalate isomerase large subunit  60.04 
 
 
473 aa  574  1.0000000000000001e-162  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A2732  isopropylmalate isomerase large subunit  60.17 
 
 
477 aa  573  1.0000000000000001e-162  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0458261 
 
 
-
 
NC_007406  Nwi_2785  isopropylmalate isomerase large subunit  61.17 
 
 
468 aa  570  1e-161  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.378068  normal 
 
 
-
 
NC_007908  Rfer_1795  isopropylmalate isomerase large subunit  58.79 
 
 
490 aa  570  1e-161  Rhodoferax ferrireducens T118  Bacteria  normal  0.367399  n/a   
 
 
-
 
NC_007969  Pcryo_1574  isopropylmalate isomerase large subunit  60.21 
 
 
472 aa  569  1e-161  Psychrobacter cryohalolentis K5  Bacteria  normal  0.578069  normal 
 
 
-
 
NC_011004  Rpal_0240  isopropylmalate isomerase large subunit  61.39 
 
 
469 aa  570  1e-161  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2091  3-isopropylmalate dehydratase, large subunit  60.08 
 
 
475 aa  567  1e-160  Marinomonas sp. MWYL1  Bacteria  normal  0.0250887  normal 
 
 
-
 
NC_007778  RPB_0348  isopropylmalate isomerase large subunit  61.61 
 
 
470 aa  567  1e-160  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0504  isopropylmalate isomerase large subunit  60.95 
 
 
470 aa  565  1e-160  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0363  isopropylmalate isomerase large subunit  60.95 
 
 
468 aa  563  1.0000000000000001e-159  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.271446  normal  0.532793 
 
 
-
 
NC_007204  Psyc_1413  isopropylmalate isomerase large subunit  59.79 
 
 
472 aa  564  1.0000000000000001e-159  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.634332 
 
 
-
 
NC_010511  M446_0819  isopropylmalate isomerase large subunit  61.08 
 
 
470 aa  563  1.0000000000000001e-159  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0227  isopropylmalate isomerase large subunit  61.17 
 
 
473 aa  561  1.0000000000000001e-159  Rhodopseudomonas palustris BisB18  Bacteria  normal  hitchhiker  0.00400027 
 
 
-
 
NC_010725  Mpop_4879  isopropylmalate isomerase large subunit  60.82 
 
 
469 aa  563  1.0000000000000001e-159  Methylobacterium populi BJ001  Bacteria  normal  0.29662  normal  0.101077 
 
 
-
 
NC_007964  Nham_3584  isopropylmalate isomerase large subunit  61.17 
 
 
468 aa  564  1.0000000000000001e-159  Nitrobacter hamburgensis X14  Bacteria  normal  0.931395  n/a   
 
 
-
 
NC_011666  Msil_0636  3-isopropylmalate dehydratase, large subunit  60.82 
 
 
468 aa  564  1.0000000000000001e-159  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0643204 
 
 
-
 
NC_008009  Acid345_2916  isopropylmalate isomerase large subunit  61.04 
 
 
470 aa  562  1.0000000000000001e-159  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4757  isopropylmalate isomerase large subunit  60.82 
 
 
469 aa  561  1.0000000000000001e-159  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_4355  isopropylmalate isomerase large subunit  60.82 
 
 
480 aa  561  1.0000000000000001e-159  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_013412  GYMC61_3567  isopropylmalate isomerase large subunit  58.92 
 
 
477 aa  561  1.0000000000000001e-159  Geobacillus sp. Y412MC61  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1779  3-isopropylmalate dehydratase, large subunit  59.66 
 
 
467 aa  564  1.0000000000000001e-159  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.00189563 
 
 
-
 
NC_011894  Mnod_1416  isopropylmalate isomerase large subunit  60.65 
 
 
470 aa  561  1.0000000000000001e-159  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.941586  n/a   
 
 
-
 
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