Gene RSc1990 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1990 
SymbolleuC 
ID1220830 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp2166716 
End bp2168125 
Gene Length1410 bp 
Protein Length469 aa 
Translation table11 
GC content68% 
IMG OID637238384 
Productisopropylmalate isomerase large subunit 
Protein accessionNP_520111 
Protein GI17546709 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0065] 3-isopropylmalate dehydratase large subunit 
TIGRFAM ID[TIGR00170] 3-isopropylmalate dehydratase, large subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.508129 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.146532 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAAGA CGCTCTACGA CAAACTCTGG GACGACCACG TCGTCCACAC CGAAGAGGAC 
GGCACGACCG TGCTCTACAT CGACCGCCAG CTGCTGCACG AGGTGACCAG CCCGCAGGCG
TTCGAGGGCC TGAAGCTGGC CAACCGCCCG GTCTGGCGCA TCAGCGCGAA CCTGGCCGTC
TCGGACCACA ACGTGCCGAC CACCGACCGC TCGCACGGCA TCGCCGACCC GGTCTCCAAG
CTGCAGGTCG ACACGCTCGA TGCCAACTGC GACAGCTTCG GCATCACGCA ATTCAAGATG
ACCGACAAGC GCCAGGGCAT CGTGCACGTG ATCGGGCCGG AGCAGGGCGC GACGTTGCCG
GGCATGACGG TGGTCTGCGG CGACTCGCAC ACCAGCACGC ACGGCGCGTT CGGCGCGCTG
GCGCACGGCA TCGGCACCTC GGAAGTCGAG CACGTGCTGG CCACGCAGAC GCTGCTCGCC
AAGAAGAGCA AGAACATGCT GGTGAAGGTC GAAGGCACGC TGCCGCGCGG CTGCACCGCC
AAGGACATCG TGCTCGCCAT CATCGGCAAG ATCGGCACGG CGGGCGGCAC CGGCTACGCG
ATGGAGTTCG GTGGCTCGGC CATCCGCGCG CTGTCGATGG AAGGCCGCAT GACGGTGTGC
AACATGGCGA TCGAGGCGGG CGCGCGCGCC GGCATGGTCG GCGTGGACGA CATCACGCTC
GAGTACATCA AGGGCCGTCC GTTCGCGCCG CAGGGCGTGG AATGGGAGCA GGCCGTGGCC
TACTGGCGCT CGCTGCACTC CGATGAGGGT GCCCGCTTCG ACCACGTGGT CGAGCTGCGC
GCCGAAGAGA TCCGCCCGCA GGTGAGCTGG GGCACCTCGC CGGAAATGGT GGTCAGCATC
GAAGACCGCG TGCCGGATCC GGACAAGGAA AAGGACCCGG TCAAGCGCAA TGCCATGGAG
CGCGCGCTCG AGTACATGGC CCTGCAGCCC AACGTCGCCA TCGGCGACAT CCGCATCGAC
AAGGTCTTCA TCGGCTCGTG CACCAACAGC CGCATCGAGG ACATGCGCGC CGCCGCCTGG
GTGGTGCAGA AGCTCGGCAA GCGCATTGCC TCCAACGTGA AGCTGGCCAT GGTGGTGCCG
GGTTCGGGCC TGGTCAAGGA GCAGGCCGAG CGCGAAGGGC TGGACAAAAT TTTCAAGGCC
GCCGGCTTCG AATGGCGCGA GCCGGGCTGC TCGATGTGCC TGGCGATGAA CGCCGACCGG
CTGGAGCCGG GCGAGCGCTG CGCGTCCACG TCCAACCGCA ATTTCGAAGG CCGGCAGGGC
GCGGGCGGCC GCACCCACCT GGTGAGCCCG GCGATGGCCG CCGCCGCCGC GCTGGAAGGC
CACTTCGTCG ACGTGCGCAA GCTCGGCTGA
 
Protein sequence
MAKTLYDKLW DDHVVHTEED GTTVLYIDRQ LLHEVTSPQA FEGLKLANRP VWRISANLAV 
SDHNVPTTDR SHGIADPVSK LQVDTLDANC DSFGITQFKM TDKRQGIVHV IGPEQGATLP
GMTVVCGDSH TSTHGAFGAL AHGIGTSEVE HVLATQTLLA KKSKNMLVKV EGTLPRGCTA
KDIVLAIIGK IGTAGGTGYA MEFGGSAIRA LSMEGRMTVC NMAIEAGARA GMVGVDDITL
EYIKGRPFAP QGVEWEQAVA YWRSLHSDEG ARFDHVVELR AEEIRPQVSW GTSPEMVVSI
EDRVPDPDKE KDPVKRNAME RALEYMALQP NVAIGDIRID KVFIGSCTNS RIEDMRAAAW
VVQKLGKRIA SNVKLAMVVP GSGLVKEQAE REGLDKIFKA AGFEWREPGC SMCLAMNADR
LEPGERCAST SNRNFEGRQG AGGRTHLVSP AMAAAAALEG HFVDVRKLG