| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1445 |
|---|
| Symbol | |
|---|
| ID | 8019090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1524908 |
|---|
| End bp | 1526350 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644830223 |
|---|
| Product | 3-isopropylmalate dehydratase, large subunit |
|---|
| Protein accession | YP_002981404 |
|---|
| Protein GI | 241663044 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
|---|
| TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0303159 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.651921 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACCTC AGACCTTGTT CGCAAAGCTG TGGCAACGCC ACGCCGTGCG TGATACCGAC
GATGGCCACA CGCTGCTTTA CATCGACCTG CATCTGGTCA ATGAAGTGAC CAGCCCGCAG
GCGTTCGAAG GACTGCGCAT CAGCCGGTTG CACCCGTGGC GGCCCGCCTC GGTGCTGGCC
ACCGAAGACC ATAACGTGCC GACCGCCAAC CGCGCCGCCG GCATTACCGA TGACATCGCG
CGGCGTCAGG TCGAGGCGCT GCGCAGCAAC TGCGCGCGCT TCGGCATTAC CGAATACCCG
ATGCAGGACG CGCGTCAGGG CATCCTGCAC GTGATCGGGC CGGAGCAGGG GGCCACGCTG
CCAGGCATGA CGATCGTCTG CGGCGATTCG CATACCACCA CGCACGGCGC ATTCGCCACG
CTGGCATTCG GTATCGGGAC GTCCGAAATC GAACACGTGC TGGCCACGCA ATGCCTGATC
GTCAAAAAGA TGAAGACGAT GCGCGTGCTG GTGGAGGGCG ACCTGTCGCC CGGCGTGACT
TCCAAGGACG TGGCGCTTGC GCTGATCGGC CGTATCGGCA CCGCGGGCGC CACCGGGTAT
GCCATCGAAT TTGCCGGCTC GGCCATCTCT GCGATGAGCA TGGATGCACG CATGACCCTG
TGCAACATGG TCATCGAAGC CGGAGCACGC TGCGGCATGG TCGCCGTGGA TGACAAAACC
ATCAACTACC TTCGCGGGCG GGCGCGTGCG CCGCAGGGCG CGCAATGGGA CGCCGCGCAG
GCGTACTGGC GCACGCTGCG CAGCGATGAA GGGGCGCAGT TCGATCGGAC TATCGCACTC
GACGCGACCA CGATTCGCCC ACACGTCACC TGGGGCACCT CGCCCGAGAT GGTGGTCACC
ATCGACGGCC GTGTGCCCGA CCCGGCCGAG GAAAGCGACC CCATCAAGCG GCAAGGCATC
ACCCGGGCGC TTACCTACAT GGGACTCGAG CCGGGCACGC CGCTGCGCGA CATCGCACTC
GACAAGATTT TCATCGGCTC GTGCACGAAT GCACGTATCG AAGATCTGCG TGCCGCGGCG
CGTGTGGTGG CCGGCAAGCA CGTTGCGGCC AACATCGTGC AGGCGCTTGT GGTGCCGGGC
TCCGGACTGG TCAAACGCCA GGCCGAGGCC GAAGGGCTCG ACCGCATCTT CGTCGATGCC
GGTTTTGAAT GGCGCGACCC GGGGTGTTCG ATGTGCCTGG GCATGAACGA CGACCGCCTG
CAGCCGGGCG AGCGCTGCGC GTCAACGTCC AATCGCAATT TTGAAGGGCG GCAGGGCGCT
GGCGGGCGCA CCCATCTGGT CAGCCCGCCA ATGGCGGCTG CCGCAGCAAT CGCGGGGCAT
TTCGTTGCCG TCAGCGAACT TGGCGCCGAT GTTTTGGGGA GGAACAACGA TGCAGGCTTT
TGA
|
|---|
| Protein sequence | MTPQTLFAKL WQRHAVRDTD DGHTLLYIDL HLVNEVTSPQ AFEGLRISRL HPWRPASVLA
TEDHNVPTAN RAAGITDDIA RRQVEALRSN CARFGITEYP MQDARQGILH VIGPEQGATL
PGMTIVCGDS HTTTHGAFAT LAFGIGTSEI EHVLATQCLI VKKMKTMRVL VEGDLSPGVT
SKDVALALIG RIGTAGATGY AIEFAGSAIS AMSMDARMTL CNMVIEAGAR CGMVAVDDKT
INYLRGRARA PQGAQWDAAQ AYWRTLRSDE GAQFDRTIAL DATTIRPHVT WGTSPEMVVT
IDGRVPDPAE ESDPIKRQGI TRALTYMGLE PGTPLRDIAL DKIFIGSCTN ARIEDLRAAA
RVVAGKHVAA NIVQALVVPG SGLVKRQAEA EGLDRIFVDA GFEWRDPGCS MCLGMNDDRL
QPGERCASTS NRNFEGRQGA GGRTHLVSPP MAAAAAIAGH FVAVSELGAD VLGRNNDAGF
|
|---|
| |