Gene RPD_0504 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0504 
Symbol 
ID4020972 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp577127 
End bp578539 
Gene Length1413 bp 
Protein Length470 aa 
Translation table11 
GC content67% 
IMG OID637960691 
Productisopropylmalate isomerase large subunit 
Protein accessionYP_567643 
Protein GI91974984 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0065] 3-isopropylmalate dehydratase large subunit 
TIGRFAM ID[TIGR00170] 3-isopropylmalate dehydratase, large subunit 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCTG CAAAGCCCAC CACGCTGTAC GACAAGATCT GGAACGACCA TCTGGTGCAC 
GAGGCCGAGG ACGGCACCTG CCTGCTCTAT ATCGACCGGC ATCTGGTGCA CGAAGTGACT
TCGCCGCAGG CGTTCGAGGG GCTGCGCACC GCCGGCCGCA AGGTGCATTC GCCGGAGAAG
ACGCTGGCGG TGGTCGATCA CAACGTGCCG ACCACCGATC GCTCCAAGCC CAATCCCGAT
CCGGAGAGCG CCGAGCAGAT CGCCGCGCTC GCCGAGAACG CCCGCGATTT CGGCGTCACC
TATTACAACG AACACGACAA GCGGCAGGGC GTCGTCCACG TCATCGGCCC GGAGCAGGGC
TTCACGCTGC CCGGCACCAC CATCGTCTGC GGCGACAGCC ACACCTCGAC GCATGGCGCG
TTCGGCGCGC TGGCGCATGG CATCGGCACG TCTGAAGTGG AGCACGTGCT GGCGACCCAG
ACGCTGATCC AGAAAAAGGC CAAGAACATG CGCGTGACCG TCGACGGCGA TCTGCCGGAC
GGCGTCACCG CCAAGGACAT CATCCTGGCG ATCATCGGCG AGATCGGCAC CGCGGGCGGC
ACCGGCTACG TGCTGGAATA TGCCGGCGAC GCGATCCGCG CGCTGTCGAT GGAAGGCCGC
ATGACGGTCT GTAACATGTC GATCGAAGGC GGCGCCCGCG CCGGCCTGAT CGCGCCGGAC
GAGAAGGCGT ATGCCTACCT GAAGGGTCGC CCGATGGCGC CGACCGGCGC CAATTGGGAC
GCCGCGATGC GCTACTGGGA CACACTGCGT TCCGACGAGG GCGCGCATTT CGACCACGAG
CTCCGGCTCG ACGCCGCGGC GCTGCCGCCG ATCGTCACCT GGGGCACCAG CCCCGAGGAC
GTGATCTCGA TCACCGGTCG CGTGCCGAAC CCGGCCGACA TCGCCGACGA AGCCAAGCGG
CTCTCGAAGG AACGCGCGCT GGCCTATATG GGCCTGACGC CGGGGACCAG GATCACCGAC
ATCAAGATCG ATCGAATGTT CATCGGCTCC TGCACCAACG GGCGGATCGA GGATCTGCGC
GCTGCCGCCA AGGTCGCCGA GGGCAAGACC GTCAACGGCA ATGTCAGCGC GATGATCGTG
CCGGGCTCGG GTCTGGTGAA GGAGCAGGCG GAGGCCGAAG GCCTCGACAA GATCTTCGTC
AAGGCCGGCT TCGAATGGCG CGAGCCGGGC TGCTCGATGT GCCTCGCGAT GAATCCCGAC
AAGCTCGCGC CGGAAGAGCG CTGCGCCTCG ACGTCGAATC GCAATTTCGA AGGCCGTCAG
GGCTTCAAGG GCCGCACCCA TCTGGTGTCG CCCGCGATGG CCGCCGCAGC CGCGATCGCC
GGCCATTTCG TCGACATCCG CGAGTGGCGC TGA
 
Protein sequence
MSAAKPTTLY DKIWNDHLVH EAEDGTCLLY IDRHLVHEVT SPQAFEGLRT AGRKVHSPEK 
TLAVVDHNVP TTDRSKPNPD PESAEQIAAL AENARDFGVT YYNEHDKRQG VVHVIGPEQG
FTLPGTTIVC GDSHTSTHGA FGALAHGIGT SEVEHVLATQ TLIQKKAKNM RVTVDGDLPD
GVTAKDIILA IIGEIGTAGG TGYVLEYAGD AIRALSMEGR MTVCNMSIEG GARAGLIAPD
EKAYAYLKGR PMAPTGANWD AAMRYWDTLR SDEGAHFDHE LRLDAAALPP IVTWGTSPED
VISITGRVPN PADIADEAKR LSKERALAYM GLTPGTRITD IKIDRMFIGS CTNGRIEDLR
AAAKVAEGKT VNGNVSAMIV PGSGLVKEQA EAEGLDKIFV KAGFEWREPG CSMCLAMNPD
KLAPEERCAS TSNRNFEGRQ GFKGRTHLVS PAMAAAAAIA GHFVDIREWR