Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_0504 |
Symbol | |
ID | 4020972 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 577127 |
End bp | 578539 |
Gene Length | 1413 bp |
Protein Length | 470 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637960691 |
Product | isopropylmalate isomerase large subunit |
Protein accession | YP_567643 |
Protein GI | 91974984 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGCTG CAAAGCCCAC CACGCTGTAC GACAAGATCT GGAACGACCA TCTGGTGCAC GAGGCCGAGG ACGGCACCTG CCTGCTCTAT ATCGACCGGC ATCTGGTGCA CGAAGTGACT TCGCCGCAGG CGTTCGAGGG GCTGCGCACC GCCGGCCGCA AGGTGCATTC GCCGGAGAAG ACGCTGGCGG TGGTCGATCA CAACGTGCCG ACCACCGATC GCTCCAAGCC CAATCCCGAT CCGGAGAGCG CCGAGCAGAT CGCCGCGCTC GCCGAGAACG CCCGCGATTT CGGCGTCACC TATTACAACG AACACGACAA GCGGCAGGGC GTCGTCCACG TCATCGGCCC GGAGCAGGGC TTCACGCTGC CCGGCACCAC CATCGTCTGC GGCGACAGCC ACACCTCGAC GCATGGCGCG TTCGGCGCGC TGGCGCATGG CATCGGCACG TCTGAAGTGG AGCACGTGCT GGCGACCCAG ACGCTGATCC AGAAAAAGGC CAAGAACATG CGCGTGACCG TCGACGGCGA TCTGCCGGAC GGCGTCACCG CCAAGGACAT CATCCTGGCG ATCATCGGCG AGATCGGCAC CGCGGGCGGC ACCGGCTACG TGCTGGAATA TGCCGGCGAC GCGATCCGCG CGCTGTCGAT GGAAGGCCGC ATGACGGTCT GTAACATGTC GATCGAAGGC GGCGCCCGCG CCGGCCTGAT CGCGCCGGAC GAGAAGGCGT ATGCCTACCT GAAGGGTCGC CCGATGGCGC CGACCGGCGC CAATTGGGAC GCCGCGATGC GCTACTGGGA CACACTGCGT TCCGACGAGG GCGCGCATTT CGACCACGAG CTCCGGCTCG ACGCCGCGGC GCTGCCGCCG ATCGTCACCT GGGGCACCAG CCCCGAGGAC GTGATCTCGA TCACCGGTCG CGTGCCGAAC CCGGCCGACA TCGCCGACGA AGCCAAGCGG CTCTCGAAGG AACGCGCGCT GGCCTATATG GGCCTGACGC CGGGGACCAG GATCACCGAC ATCAAGATCG ATCGAATGTT CATCGGCTCC TGCACCAACG GGCGGATCGA GGATCTGCGC GCTGCCGCCA AGGTCGCCGA GGGCAAGACC GTCAACGGCA ATGTCAGCGC GATGATCGTG CCGGGCTCGG GTCTGGTGAA GGAGCAGGCG GAGGCCGAAG GCCTCGACAA GATCTTCGTC AAGGCCGGCT TCGAATGGCG CGAGCCGGGC TGCTCGATGT GCCTCGCGAT GAATCCCGAC AAGCTCGCGC CGGAAGAGCG CTGCGCCTCG ACGTCGAATC GCAATTTCGA AGGCCGTCAG GGCTTCAAGG GCCGCACCCA TCTGGTGTCG CCCGCGATGG CCGCCGCAGC CGCGATCGCC GGCCATTTCG TCGACATCCG CGAGTGGCGC TGA
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Protein sequence | MSAAKPTTLY DKIWNDHLVH EAEDGTCLLY IDRHLVHEVT SPQAFEGLRT AGRKVHSPEK TLAVVDHNVP TTDRSKPNPD PESAEQIAAL AENARDFGVT YYNEHDKRQG VVHVIGPEQG FTLPGTTIVC GDSHTSTHGA FGALAHGIGT SEVEHVLATQ TLIQKKAKNM RVTVDGDLPD GVTAKDIILA IIGEIGTAGG TGYVLEYAGD AIRALSMEGR MTVCNMSIEG GARAGLIAPD EKAYAYLKGR PMAPTGANWD AAMRYWDTLR SDEGAHFDHE LRLDAAALPP IVTWGTSPED VISITGRVPN PADIADEAKR LSKERALAYM GLTPGTRITD IKIDRMFIGS CTNGRIEDLR AAAKVAEGKT VNGNVSAMIV PGSGLVKEQA EAEGLDKIFV KAGFEWREPG CSMCLAMNPD KLAPEERCAS TSNRNFEGRQ GFKGRTHLVS PAMAAAAAIA GHFVDIREWR
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