More than 300 homologs were found in PanDaTox collection
for query gene Tpet_1541 on replicon NC_009486
Organism: Thermotoga petrophila RKU-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009486  Tpet_1541  RpiR family transcriptional regulator  100 
 
 
266 aa  540  9.999999999999999e-153  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000907266  n/a   
 
 
-
 
NC_010483  TRQ2_1590  RpiR family transcriptional regulator  97.37 
 
 
266 aa  530  1e-150  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.000388341  n/a   
 
 
-
 
NC_010003  Pmob_0070  RpiR family transcriptional regulator  40.66 
 
 
269 aa  193  3e-48  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0588  RpiR family transcriptional regulator  35.98 
 
 
273 aa  137  2e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.189062  normal 
 
 
-
 
NC_010184  BcerKBAB4_2088  RpiR family transcriptional regulator  34.66 
 
 
284 aa  137  2e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0949278  n/a   
 
 
-
 
NC_010681  Bphyt_3371  transcriptional regulator, RpiR family  35.98 
 
 
281 aa  137  2e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0964604  hitchhiker  0.00000000707391 
 
 
-
 
NC_012034  Athe_1993  transcriptional regulator, RpiR family  31.15 
 
 
280 aa  135  9e-31  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0168  RpiR family transcriptional regulator  31.54 
 
 
280 aa  134  1.9999999999999998e-30  Thermoanaerobacter sp. X514  Bacteria  normal  0.057217  n/a   
 
 
-
 
NC_003909  BCE_2295  RpiR family transcriptional regulator  33.07 
 
 
284 aa  131  1.0000000000000001e-29  Bacillus cereus ATCC 10987  Bacteria  normal  0.651664  n/a   
 
 
-
 
NC_011725  BCB4264_A2246  transcriptional regulator, RpiR family  31.29 
 
 
284 aa  131  1.0000000000000001e-29  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3077  transcriptional regulator, RpiR family  31.29 
 
 
284 aa  131  1.0000000000000001e-29  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.0000143664 
 
 
-
 
NC_009674  Bcer98_1662  RpiR family transcriptional regulator  33.06 
 
 
284 aa  129  5.0000000000000004e-29  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.574027  n/a   
 
 
-
 
NC_010003  Pmob_0521  RpiR family transcriptional regulator  36.87 
 
 
283 aa  128  1.0000000000000001e-28  Petrotoga mobilis SJ95  Bacteria  normal  0.207231  n/a   
 
 
-
 
NC_013510  Tcur_4022  transcriptional regulator, RpiR family  30.66 
 
 
320 aa  126  3e-28  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0204031  n/a   
 
 
-
 
NC_003910  CPS_2280  DNA-binding transcriptional regulator HexR  33.33 
 
 
282 aa  126  4.0000000000000003e-28  Colwellia psychrerythraea 34H  Bacteria  normal  0.499915  n/a   
 
 
-
 
NC_013421  Pecwa_2115  DNA-binding transcriptional regulator HexR  30.34 
 
 
308 aa  126  4.0000000000000003e-28  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1831  DNA-binding transcriptional regulator HexR  30.34 
 
 
289 aa  126  4.0000000000000003e-28  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.197793  n/a   
 
 
-
 
NC_010622  Bphy_2581  RpiR family transcriptional regulator  35.38 
 
 
278 aa  125  7e-28  Burkholderia phymatum STM815  Bacteria  normal  0.0624506  hitchhiker  0.000000255705 
 
 
-
 
NC_011661  Dtur_1776  transcriptional regulator, RpiR family  33.71 
 
 
281 aa  123  4e-27  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3564  RpiR family transcriptional regulator  32.88 
 
 
284 aa  121  9.999999999999999e-27  Clostridium phytofermentans ISDg  Bacteria  normal  0.536409  n/a   
 
 
-
 
NC_014212  Mesil_0283  transcriptional regulator, RpiR family  34.84 
 
 
279 aa  120  1.9999999999999998e-26  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E2129  DNA-binding transcriptional regulator HexR  29.39 
 
 
289 aa  120  1.9999999999999998e-26  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0898  HTH-type transcriptional regulator, rpiR family  33.48 
 
 
292 aa  120  3e-26  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.679683  n/a   
 
 
-
 
NC_007973  Rmet_1044  RpiR family transcriptional regulator  31.6 
 
 
338 aa  119  3.9999999999999996e-26  Cupriavidus metallidurans CH34  Bacteria  normal  0.408154  normal  0.734102 
 
 
-
 
NC_011312  VSAL_I2031  DNA-binding transcriptional regulator HexR  31.08 
 
 
284 aa  119  3.9999999999999996e-26  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0294963  n/a   
 
 
-
 
NC_008781  Pnap_0652  RpiR family transcriptional regulator  31.9 
 
 
281 aa  119  3.9999999999999996e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.334737  normal  0.0629992 
 
 
-
 
NC_009708  YpsIP31758_2023  DNA-binding transcriptional regulator HexR  29.75 
 
 
289 aa  119  4.9999999999999996e-26  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.197371  n/a   
 
 
-
 
NC_010551  BamMC406_0580  RpiR family transcriptional regulator  30.49 
 
 
282 aa  119  4.9999999999999996e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  0.658912  normal  0.89076 
 
 
-
 
NC_010498  EcSMS35_1333  DNA-binding transcriptional regulator HexR  29.03 
 
 
289 aa  119  4.9999999999999996e-26  Escherichia coli SMS-3-5  Bacteria  normal  0.0116463  normal 
 
 
-
 
NC_010465  YPK_2135  DNA-binding transcriptional regulator HexR  29.75 
 
 
301 aa  119  4.9999999999999996e-26  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_2589  DNA-binding transcriptional regulator HexR  29.03 
 
 
289 aa  119  4.9999999999999996e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00161066  normal  0.817634 
 
 
-
 
NC_008262  CPR_0179  RpiR family transcriptional regulator  28.68 
 
 
279 aa  119  4.9999999999999996e-26  Clostridium perfringens SM101  Bacteria  normal  0.912597  n/a   
 
 
-
 
NC_008390  Bamb_0554  RpiR family transcriptional regulator  30.49 
 
 
282 aa  119  4.9999999999999996e-26  Burkholderia ambifaria AMMD  Bacteria  normal  0.335525  n/a   
 
 
-
 
NC_008463  PA14_71780  RpiR family transcriptional regulator  33.33 
 
 
293 aa  119  4.9999999999999996e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A2413  DNA-binding transcriptional regulator HexR  29.75 
 
 
301 aa  119  4.9999999999999996e-26  Yersinia pestis Angola  Bacteria  hitchhiker  0.000012699  normal 
 
 
-
 
CP001509  ECD_01824  predicted DNA-binding transcriptional regulator  29.03 
 
 
289 aa  119  6e-26  Escherichia coli BL21(DE3)  Bacteria  decreased coverage  0.000364184  n/a   
 
 
-
 
CP001637  EcDH1_1787  transcriptional regulator, RpiR family  29.03 
 
 
289 aa  119  6e-26  Escherichia coli DH1  Bacteria  hitchhiker  0.0000522748  n/a   
 
 
-
 
NC_007510  Bcep18194_A3745  RpiR family transcriptional regulator  30.49 
 
 
282 aa  119  6e-26  Burkholderia sp. 383  Bacteria  normal  normal  0.767556 
 
 
-
 
NC_010468  EcolC_1779  DNA-binding transcriptional regulator HexR  29.03 
 
 
289 aa  119  6e-26  Escherichia coli ATCC 8739  Bacteria  normal  0.0686365  normal  0.239123 
 
 
-
 
NC_009800  EcHS_A1946  DNA-binding transcriptional regulator HexR  29.03 
 
 
289 aa  119  6e-26  Escherichia coli HS  Bacteria  normal  0.90466  n/a   
 
 
-
 
NC_007954  Sden_2080  DNA-binding transcriptional regulator HexR  30 
 
 
286 aa  119  6e-26  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00496237  n/a   
 
 
-
 
NC_012892  B21_01812  hypothetical protein  29.03 
 
 
289 aa  119  6e-26  Escherichia coli BL21  Bacteria  decreased coverage  0.000387969  n/a   
 
 
-
 
NC_009436  Ent638_2422  DNA-binding transcriptional regulator HexR  30.25 
 
 
289 aa  119  6e-26  Enterobacter sp. 638  Bacteria  normal  0.0329148  normal 
 
 
-
 
NC_012880  Dd703_2137  DNA-binding transcriptional regulator HexR  31.87 
 
 
289 aa  119  6e-26  Dickeya dadantii Ech703  Bacteria  hitchhiker  0.00439922  n/a   
 
 
-
 
NC_009801  EcE24377A_2083  DNA-binding transcriptional regulator HexR  29.03 
 
 
289 aa  119  6e-26  Escherichia coli E24377A  Bacteria  normal  0.688583  n/a   
 
 
-
 
NC_008060  Bcen_0176  RpiR family transcriptional regulator  30.49 
 
 
282 aa  119  7e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0659  RpiR family transcriptional regulator  30.49 
 
 
282 aa  119  7e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  0.78991  n/a   
 
 
-
 
NC_009656  PSPA7_6227  putative transcriptional regulator  33.33 
 
 
293 aa  119  7e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0626  RpiR family transcriptional regulator  30.49 
 
 
282 aa  119  7e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0718  DNA-binding transcriptional regulator HexR  29.63 
 
 
284 aa  119  7.999999999999999e-26  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2769  DNA-binding transcriptional regulator HexR  30 
 
 
290 aa  118  9e-26  Serratia proteamaculans 568  Bacteria  normal  0.0149863  hitchhiker  0.00789418 
 
 
-
 
NC_009783  VIBHAR_02633  DNA-binding transcriptional regulator HexR  29.63 
 
 
284 aa  118  9e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008261  CPF_0182  RpiR family transcriptional regulator  28.68 
 
 
279 aa  118  9e-26  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2634  RpiR family transcriptional regulator  32.93 
 
 
332 aa  117  9.999999999999999e-26  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1223  RpiR family transcriptional regulator  32.93 
 
 
339 aa  118  9.999999999999999e-26  Burkholderia mallei NCTC 10229  Bacteria  normal  0.809611  n/a   
 
 
-
 
NC_009076  BURPS1106A_3444  RpiR family transcriptional regulator  33.33 
 
 
332 aa  117  9.999999999999999e-26  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2447  RpiR family transcriptional regulator  32.93 
 
 
332 aa  117  9.999999999999999e-26  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1080  RpiR family transcriptional regulator  31.2 
 
 
318 aa  118  9.999999999999999e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.0801962  n/a   
 
 
-
 
NC_007434  BURPS1710b_3444  RpiR family transcriptional regulator  33.33 
 
 
339 aa  117  9.999999999999999e-26  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1216  RpiR family transcriptional regulator  33.74 
 
 
334 aa  117  9.999999999999999e-26  Burkholderia thailandensis E264  Bacteria  normal  0.3152  n/a   
 
 
-
 
NC_011205  SeD_A1361  DNA-binding transcriptional regulator HexR  29.18 
 
 
289 aa  118  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.812613  hitchhiker  0.000131827 
 
 
-
 
NC_008785  BMASAVP1_A0365  RpiR family transcriptional regulator  32.93 
 
 
332 aa  117  9.999999999999999e-26  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2101  DNA-binding transcriptional regulator HexR  29.18 
 
 
289 aa  117  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.928102 
 
 
-
 
NC_011080  SNSL254_A2046  DNA-binding transcriptional regulator HexR  29.18 
 
 
289 aa  117  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.45003 
 
 
-
 
NC_011094  SeSA_A2041  DNA-binding transcriptional regulator HexR  29.18 
 
 
289 aa  117  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_3409  RpiR family transcriptional regulator  33.33 
 
 
332 aa  117  1.9999999999999998e-25  Burkholderia pseudomallei 668  Bacteria  normal  0.977628  n/a   
 
 
-
 
NC_011149  SeAg_B1237  DNA-binding transcriptional regulator HexR  29.18 
 
 
289 aa  117  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.101978  n/a   
 
 
-
 
NC_008228  Patl_0969  DNA-binding transcriptional regulator HexR  28.89 
 
 
284 aa  117  1.9999999999999998e-25  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0694  RpiR family transcriptional regulator  30.82 
 
 
281 aa  117  1.9999999999999998e-25  Acidovorax sp. JS42  Bacteria  normal  hitchhiker  0.00592918 
 
 
-
 
NC_009092  Shew_2049  DNA-binding transcriptional regulator HexR  28.62 
 
 
284 aa  117  1.9999999999999998e-25  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000665792  normal  0.388652 
 
 
-
 
NC_010184  BcerKBAB4_0731  RpiR family transcriptional regulator  30.74 
 
 
287 aa  116  3e-25  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2245  DNA-binding transcriptional regulator HexR  31.08 
 
 
289 aa  116  3.9999999999999997e-25  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1394  transcriptional regulator, RpiR family  30.86 
 
 
285 aa  115  5e-25  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0784467  normal  0.640102 
 
 
-
 
NC_008700  Sama_1813  DNA-binding transcriptional regulator HexR  30.68 
 
 
284 aa  115  5e-25  Shewanella amazonensis SB2B  Bacteria  unclonable  0.00000000867158  normal 
 
 
-
 
NC_008528  OEOE_1524  transcriptional regulator  27.34 
 
 
282 aa  115  6e-25  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0672  transcriptional regulator, RpiR family  30.11 
 
 
281 aa  115  6e-25  Acidovorax ebreus TPSY  Bacteria  normal  0.654483  n/a   
 
 
-
 
NC_010524  Lcho_3388  RpiR family transcriptional regulator  29.39 
 
 
284 aa  115  6.9999999999999995e-25  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007948  Bpro_0750  RpiR family transcriptional regulator  31.18 
 
 
281 aa  115  6.9999999999999995e-25  Polaromonas sp. JS666  Bacteria  normal  0.414867  normal  0.513903 
 
 
-
 
NC_011725  BCB4264_A0875  putative transcriptional regulator, RpiR family  30.35 
 
 
287 aa  115  6.9999999999999995e-25  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0782  RpiR family transcriptional regulator  30.74 
 
 
287 aa  115  7.999999999999999e-25  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0821  RpiR family transcriptional regulator  30.74 
 
 
287 aa  115  7.999999999999999e-25  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0917  putative transcriptional regulator, RpiR family  30.74 
 
 
287 aa  115  7.999999999999999e-25  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  3.47337e-41 
 
 
-
 
NC_009901  Spea_2336  DNA-binding transcriptional regulator HexR  29.26 
 
 
284 aa  115  7.999999999999999e-25  Shewanella pealeana ATCC 700345  Bacteria  normal  0.760972  n/a   
 
 
-
 
NC_005957  BT9727_0731  RpiR family transcriptional regulator  30.74 
 
 
287 aa  115  8.999999999999998e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1468  transcriptional regulator, RpiR family  30.14 
 
 
286 aa  115  8.999999999999998e-25  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000610661  n/a   
 
 
-
 
NC_011658  BCAH187_A0986  putative transcriptional regulator, RpiR family  30.74 
 
 
287 aa  115  8.999999999999998e-25  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4460  putative transcriptional regulator, RpiR family  30.74 
 
 
287 aa  115  8.999999999999998e-25  Bacillus cereus G9842  Bacteria  normal  normal  0.857974 
 
 
-
 
NC_008786  Veis_1778  RpiR family transcriptional regulator  31.54 
 
 
281 aa  115  8.999999999999998e-25  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.141472  normal 
 
 
-
 
NC_007963  Csal_2742  DNA-binding transcriptional regulator HexR  31.52 
 
 
286 aa  114  1.0000000000000001e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1891  DNA-binding transcriptional regulator HexR  30.28 
 
 
284 aa  115  1.0000000000000001e-24  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0912  RpiR family transcriptional regulator  30.74 
 
 
287 aa  114  2.0000000000000002e-24  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0717  RpiR family transcriptional regulator  30.74 
 
 
287 aa  114  2.0000000000000002e-24  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_3272  RpiR family transcriptional regulator  33.47 
 
 
289 aa  113  2.0000000000000002e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.854433  n/a   
 
 
-
 
NC_008010  Dgeo_2619  RpiR family transcriptional regulator  29.61 
 
 
286 aa  114  2.0000000000000002e-24  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4485  RpiR family transcriptional regulator  32.64 
 
 
288 aa  113  3e-24  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5676  RpiR family transcriptional regulator  30 
 
 
323 aa  113  3e-24  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.321786 
 
 
-
 
NC_009674  Bcer98_0668  RpiR family transcriptional regulator  31.01 
 
 
287 aa  113  3e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2540  DNA-binding transcriptional regulator HexR  29.26 
 
 
284 aa  113  3e-24  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0495107  normal  0.0835263 
 
 
-
 
NC_013159  Svir_35980  transcriptional regulator, RpiR family  31.11 
 
 
333 aa  112  4.0000000000000004e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.309329  normal  0.261129 
 
 
-
 
NC_007777  Francci3_3036  RpiR family transcriptional regulator  30.27 
 
 
293 aa  113  4.0000000000000004e-24  Frankia sp. CcI3  Bacteria  normal  normal  0.627986 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>