More than 300 homologs were found in PanDaTox collection
for query gene TRQ2_1590 on replicon NC_010483
Organism: Thermotoga sp. RQ2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010483  TRQ2_1590  RpiR family transcriptional regulator  100 
 
 
266 aa  540  9.999999999999999e-153  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.000388341  n/a   
 
 
-
 
NC_009486  Tpet_1541  RpiR family transcriptional regulator  97.37 
 
 
266 aa  530  1e-150  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000907266  n/a   
 
 
-
 
NC_010003  Pmob_0070  RpiR family transcriptional regulator  40.66 
 
 
269 aa  192  4e-48  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2088  RpiR family transcriptional regulator  33.87 
 
 
284 aa  135  6.0000000000000005e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0949278  n/a   
 
 
-
 
NC_010681  Bphyt_3371  transcriptional regulator, RpiR family  35.15 
 
 
281 aa  134  1.9999999999999998e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0964604  hitchhiker  0.00000000707391 
 
 
-
 
NC_012034  Athe_1993  transcriptional regulator, RpiR family  31.56 
 
 
280 aa  134  1.9999999999999998e-30  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0588  RpiR family transcriptional regulator  35.15 
 
 
273 aa  134  1.9999999999999998e-30  Burkholderia xenovorans LB400  Bacteria  normal  0.189062  normal 
 
 
-
 
NC_010320  Teth514_0168  RpiR family transcriptional regulator  31.54 
 
 
280 aa  132  3.9999999999999996e-30  Thermoanaerobacter sp. X514  Bacteria  normal  0.057217  n/a   
 
 
-
 
NC_010003  Pmob_0521  RpiR family transcriptional regulator  38.25 
 
 
283 aa  130  2.0000000000000002e-29  Petrotoga mobilis SJ95  Bacteria  normal  0.207231  n/a   
 
 
-
 
NC_003909  BCE_2295  RpiR family transcriptional regulator  32.26 
 
 
284 aa  128  9.000000000000001e-29  Bacillus cereus ATCC 10987  Bacteria  normal  0.651664  n/a   
 
 
-
 
NC_009674  Bcer98_1662  RpiR family transcriptional regulator  30.55 
 
 
284 aa  128  9.000000000000001e-29  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.574027  n/a   
 
 
-
 
NC_011772  BCG9842_B3077  transcriptional regulator, RpiR family  30.55 
 
 
284 aa  128  1.0000000000000001e-28  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.0000143664 
 
 
-
 
NC_011725  BCB4264_A2246  transcriptional regulator, RpiR family  30.55 
 
 
284 aa  128  1.0000000000000001e-28  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1776  transcriptional regulator, RpiR family  33.45 
 
 
281 aa  126  4.0000000000000003e-28  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2280  DNA-binding transcriptional regulator HexR  33.73 
 
 
282 aa  125  5e-28  Colwellia psychrerythraea 34H  Bacteria  normal  0.499915  n/a   
 
 
-
 
NC_013510  Tcur_4022  transcriptional regulator, RpiR family  29.93 
 
 
320 aa  124  2e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0204031  n/a   
 
 
-
 
NC_010622  Bphy_2581  RpiR family transcriptional regulator  34.91 
 
 
278 aa  123  3e-27  Burkholderia phymatum STM815  Bacteria  normal  0.0624506  hitchhiker  0.000000255705 
 
 
-
 
NC_013421  Pecwa_2115  DNA-binding transcriptional regulator HexR  29.66 
 
 
308 aa  123  4e-27  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1831  DNA-binding transcriptional regulator HexR  29.66 
 
 
289 aa  122  4e-27  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.197793  n/a   
 
 
-
 
NC_010001  Cphy_3564  RpiR family transcriptional regulator  33.33 
 
 
284 aa  123  4e-27  Clostridium phytofermentans ISDg  Bacteria  normal  0.536409  n/a   
 
 
-
 
NC_007954  Sden_2080  DNA-binding transcriptional regulator HexR  30.74 
 
 
286 aa  122  7e-27  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00496237  n/a   
 
 
-
 
NC_011312  VSAL_I2031  DNA-binding transcriptional regulator HexR  32.27 
 
 
284 aa  122  8e-27  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0294963  n/a   
 
 
-
 
NC_009457  VC0395_A0718  DNA-binding transcriptional regulator HexR  30.74 
 
 
284 aa  121  9.999999999999999e-27  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02633  DNA-binding transcriptional regulator HexR  30.74 
 
 
284 aa  121  9.999999999999999e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_2049  DNA-binding transcriptional regulator HexR  29.37 
 
 
284 aa  121  9.999999999999999e-27  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000665792  normal  0.388652 
 
 
-
 
NC_008228  Patl_0969  DNA-binding transcriptional regulator HexR  29.63 
 
 
284 aa  120  1.9999999999999998e-26  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0554  RpiR family transcriptional regulator  30.49 
 
 
282 aa  119  3.9999999999999996e-26  Burkholderia ambifaria AMMD  Bacteria  normal  0.335525  n/a   
 
 
-
 
NC_010551  BamMC406_0580  RpiR family transcriptional regulator  30.49 
 
 
282 aa  119  3.9999999999999996e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  0.658912  normal  0.89076 
 
 
-
 
NC_007510  Bcep18194_A3745  RpiR family transcriptional regulator  30.49 
 
 
282 aa  119  4.9999999999999996e-26  Burkholderia sp. 383  Bacteria  normal  normal  0.767556 
 
 
-
 
NC_008060  Bcen_0176  RpiR family transcriptional regulator  30.49 
 
 
282 aa  119  4.9999999999999996e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0659  RpiR family transcriptional regulator  30.49 
 
 
282 aa  119  4.9999999999999996e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  0.78991  n/a   
 
 
-
 
NC_010508  Bcenmc03_0626  RpiR family transcriptional regulator  30.49 
 
 
282 aa  119  4.9999999999999996e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1813  DNA-binding transcriptional regulator HexR  31.08 
 
 
284 aa  119  6e-26  Shewanella amazonensis SB2B  Bacteria  unclonable  0.00000000867158  normal 
 
 
-
 
NC_010184  BcerKBAB4_0731  RpiR family transcriptional regulator  31.52 
 
 
287 aa  119  7e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_3272  RpiR family transcriptional regulator  34.17 
 
 
289 aa  119  7e-26  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.854433  n/a   
 
 
-
 
NC_009901  Spea_2336  DNA-binding transcriptional regulator HexR  30 
 
 
284 aa  118  7.999999999999999e-26  Shewanella pealeana ATCC 700345  Bacteria  normal  0.760972  n/a   
 
 
-
 
NC_012793  GWCH70_1468  transcriptional regulator, RpiR family  30.85 
 
 
286 aa  118  9e-26  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000610661  n/a   
 
 
-
 
NC_005945  BAS0782  RpiR family transcriptional regulator  31.52 
 
 
287 aa  117  9.999999999999999e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0731  RpiR family transcriptional regulator  31.52 
 
 
287 aa  117  9.999999999999999e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0821  RpiR family transcriptional regulator  31.52 
 
 
287 aa  117  9.999999999999999e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0875  putative transcriptional regulator, RpiR family  31.13 
 
 
287 aa  118  9.999999999999999e-26  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0986  putative transcriptional regulator, RpiR family  31.52 
 
 
287 aa  117  9.999999999999999e-26  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1891  DNA-binding transcriptional regulator HexR  30.68 
 
 
284 aa  118  9.999999999999999e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0917  putative transcriptional regulator, RpiR family  31.52 
 
 
287 aa  117  9.999999999999999e-26  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  3.47337e-41 
 
 
-
 
NC_009708  YpsIP31758_2023  DNA-binding transcriptional regulator HexR  28.42 
 
 
289 aa  117  1.9999999999999998e-25  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.197371  n/a   
 
 
-
 
NC_010658  SbBS512_E2129  DNA-binding transcriptional regulator HexR  28.67 
 
 
289 aa  117  1.9999999999999998e-25  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0898  HTH-type transcriptional regulator, rpiR family  31.44 
 
 
292 aa  117  1.9999999999999998e-25  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.679683  n/a   
 
 
-
 
NC_011772  BCG9842_B4460  putative transcriptional regulator, RpiR family  31.52 
 
 
287 aa  117  1.9999999999999998e-25  Bacillus cereus G9842  Bacteria  normal  normal  0.857974 
 
 
-
 
NC_008262  CPR_0179  RpiR family transcriptional regulator  28.68 
 
 
279 aa  117  1.9999999999999998e-25  Clostridium perfringens SM101  Bacteria  normal  0.912597  n/a   
 
 
-
 
NC_008463  PA14_71780  RpiR family transcriptional regulator  32.68 
 
 
293 aa  117  1.9999999999999998e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A2413  DNA-binding transcriptional regulator HexR  28.42 
 
 
301 aa  117  3e-25  Yersinia pestis Angola  Bacteria  hitchhiker  0.000012699  normal 
 
 
-
 
NC_014212  Mesil_0283  transcriptional regulator, RpiR family  33.2 
 
 
279 aa  116  3e-25  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_2135  DNA-binding transcriptional regulator HexR  28.42 
 
 
301 aa  117  3e-25  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2540  DNA-binding transcriptional regulator HexR  30 
 
 
284 aa  117  3e-25  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0495107  normal  0.0835263 
 
 
-
 
NC_009656  PSPA7_6227  putative transcriptional regulator  32.68 
 
 
293 aa  117  3e-25  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0912  RpiR family transcriptional regulator  31.52 
 
 
287 aa  116  3.9999999999999997e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0717  RpiR family transcriptional regulator  31.52 
 
 
287 aa  116  3.9999999999999997e-25  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2447  RpiR family transcriptional regulator  32.93 
 
 
332 aa  116  3.9999999999999997e-25  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2634  RpiR family transcriptional regulator  32.93 
 
 
332 aa  116  3.9999999999999997e-25  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0182  RpiR family transcriptional regulator  28.68 
 
 
279 aa  116  3.9999999999999997e-25  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0365  RpiR family transcriptional regulator  32.93 
 
 
332 aa  116  3.9999999999999997e-25  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01824  predicted DNA-binding transcriptional regulator  28.32 
 
 
289 aa  115  5e-25  Escherichia coli BL21(DE3)  Bacteria  decreased coverage  0.000364184  n/a   
 
 
-
 
CP001637  EcDH1_1787  transcriptional regulator, RpiR family  28.32 
 
 
289 aa  115  5e-25  Escherichia coli DH1  Bacteria  hitchhiker  0.0000522748  n/a   
 
 
-
 
NC_007434  BURPS1710b_3444  RpiR family transcriptional regulator  33.33 
 
 
339 aa  116  5e-25  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1216  RpiR family transcriptional regulator  33.74 
 
 
334 aa  115  5e-25  Burkholderia thailandensis E264  Bacteria  normal  0.3152  n/a   
 
 
-
 
NC_010468  EcolC_1779  DNA-binding transcriptional regulator HexR  28.32 
 
 
289 aa  115  5e-25  Escherichia coli ATCC 8739  Bacteria  normal  0.0686365  normal  0.239123 
 
 
-
 
NC_009074  BURPS668_3409  RpiR family transcriptional regulator  33.33 
 
 
332 aa  115  5e-25  Burkholderia pseudomallei 668  Bacteria  normal  0.977628  n/a   
 
 
-
 
NC_011353  ECH74115_2589  DNA-binding transcriptional regulator HexR  28.32 
 
 
289 aa  116  5e-25  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00161066  normal  0.817634 
 
 
-
 
NC_012892  B21_01812  hypothetical protein  28.32 
 
 
289 aa  115  5e-25  Escherichia coli BL21  Bacteria  decreased coverage  0.000387969  n/a   
 
 
-
 
NC_009800  EcHS_A1946  DNA-binding transcriptional regulator HexR  28.32 
 
 
289 aa  115  5e-25  Escherichia coli HS  Bacteria  normal  0.90466  n/a   
 
 
-
 
NC_008836  BMA10229_A1223  RpiR family transcriptional regulator  32.93 
 
 
339 aa  116  5e-25  Burkholderia mallei NCTC 10229  Bacteria  normal  0.809611  n/a   
 
 
-
 
NC_008781  Pnap_0652  RpiR family transcriptional regulator  31.18 
 
 
281 aa  115  5e-25  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.334737  normal  0.0629992 
 
 
-
 
NC_009076  BURPS1106A_3444  RpiR family transcriptional regulator  33.33 
 
 
332 aa  115  5e-25  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1333  DNA-binding transcriptional regulator HexR  28.32 
 
 
289 aa  116  5e-25  Escherichia coli SMS-3-5  Bacteria  normal  0.0116463  normal 
 
 
-
 
NC_007347  Reut_A1080  RpiR family transcriptional regulator  30.8 
 
 
318 aa  115  6e-25  Ralstonia eutropha JMP134  Bacteria  normal  0.0801962  n/a   
 
 
-
 
NC_009674  Bcer98_0668  RpiR family transcriptional regulator  31.78 
 
 
287 aa  115  6e-25  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2083  DNA-binding transcriptional regulator HexR  28.32 
 
 
289 aa  115  6.9999999999999995e-25  Escherichia coli E24377A  Bacteria  normal  0.688583  n/a   
 
 
-
 
NC_009832  Spro_2769  DNA-binding transcriptional regulator HexR  29.66 
 
 
290 aa  115  7.999999999999999e-25  Serratia proteamaculans 568  Bacteria  normal  0.0149863  hitchhiker  0.00789418 
 
 
-
 
NC_009438  Sputcn32_1865  DNA-binding transcriptional regulator HexR  30.28 
 
 
284 aa  114  1.0000000000000001e-24  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2137  DNA-binding transcriptional regulator HexR  31.08 
 
 
289 aa  115  1.0000000000000001e-24  Dickeya dadantii Ech703  Bacteria  hitchhiker  0.00439922  n/a   
 
 
-
 
NC_004347  SO_2490  DNA-binding transcriptional regulator HexR  30.28 
 
 
284 aa  114  1.0000000000000001e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013517  Sterm_2433  transcriptional regulator, RpiR family  35.14 
 
 
282 aa  114  1.0000000000000001e-24  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00000784459  n/a   
 
 
-
 
NC_011663  Sbal223_2255  DNA-binding transcriptional regulator HexR  30.28 
 
 
284 aa  115  1.0000000000000001e-24  Shewanella baltica OS223  Bacteria  hitchhiker  0.000281724  hitchhiker  0.00000550313 
 
 
-
 
NC_007973  Rmet_1044  RpiR family transcriptional regulator  30.4 
 
 
338 aa  114  1.0000000000000001e-24  Cupriavidus metallidurans CH34  Bacteria  normal  0.408154  normal  0.734102 
 
 
-
 
NC_008321  Shewmr4_2047  DNA-binding transcriptional regulator HexR  30.28 
 
 
284 aa  114  1.0000000000000001e-24  Shewanella sp. MR-4  Bacteria  normal  normal  0.20632 
 
 
-
 
NC_008322  Shewmr7_1928  DNA-binding transcriptional regulator HexR  30.28 
 
 
284 aa  114  1.0000000000000001e-24  Shewanella sp. MR-7  Bacteria  normal  0.0915843  normal  0.285781 
 
 
-
 
NC_009436  Ent638_2422  DNA-binding transcriptional regulator HexR  29.18 
 
 
289 aa  114  1.0000000000000001e-24  Enterobacter sp. 638  Bacteria  normal  0.0329148  normal 
 
 
-
 
NC_009052  Sbal_2242  DNA-binding transcriptional regulator HexR  30.28 
 
 
284 aa  115  1.0000000000000001e-24  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009035  Sbal_4528  DNA-binding transcriptional regulator HexR  30.28 
 
 
284 aa  115  1.0000000000000001e-24  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2129  DNA-binding transcriptional regulator HexR  30.28 
 
 
284 aa  115  1.0000000000000001e-24  Shewanella baltica OS185  Bacteria  hitchhiker  0.00123484  n/a   
 
 
-
 
NC_008577  Shewana3_2152  DNA-binding transcriptional regulator HexR  30.28 
 
 
284 aa  114  1.0000000000000001e-24  Shewanella sp. ANA-3  Bacteria  normal  0.284863  normal  0.555524 
 
 
-
 
NC_009997  Sbal195_2174  DNA-binding transcriptional regulator HexR  30.28 
 
 
284 aa  115  1.0000000000000001e-24  Shewanella baltica OS195  Bacteria  normal  0.271639  normal  0.12603 
 
 
-
 
NC_008782  Ajs_0694  RpiR family transcriptional regulator  30.11 
 
 
281 aa  114  1.0000000000000001e-24  Acidovorax sp. JS42  Bacteria  normal  hitchhiker  0.00592918 
 
 
-
 
NC_010084  Bmul_2724  RpiR family transcriptional regulator  30.89 
 
 
282 aa  114  2.0000000000000002e-24  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008528  OEOE_1524  transcriptional regulator  26.98 
 
 
282 aa  114  2.0000000000000002e-24  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1394  transcriptional regulator, RpiR family  30.11 
 
 
285 aa  114  2.0000000000000002e-24  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0784467  normal  0.640102 
 
 
-
 
NC_011992  Dtpsy_0672  transcriptional regulator, RpiR family  29.39 
 
 
281 aa  113  3e-24  Acidovorax ebreus TPSY  Bacteria  normal  0.654483  n/a   
 
 
-
 
NC_011205  SeD_A1361  DNA-binding transcriptional regulator HexR  28.11 
 
 
289 aa  113  4.0000000000000004e-24  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.812613  hitchhiker  0.000131827 
 
 
-
 
NC_007948  Bpro_0750  RpiR family transcriptional regulator  30.47 
 
 
281 aa  113  4.0000000000000004e-24  Polaromonas sp. JS666  Bacteria  normal  0.414867  normal  0.513903 
 
 
-
 
NC_007963  Csal_2742  DNA-binding transcriptional regulator HexR  30.8 
 
 
286 aa  113  4.0000000000000004e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
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