More than 300 homologs were found in PanDaTox collection
for query gene Bcav_1394 on replicon NC_012669
Organism: Beutenbergia cavernae DSM 12333



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012669  Bcav_1394  transcriptional regulator, RpiR family  100 
 
 
285 aa  565  1e-160  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0784467  normal  0.640102 
 
 
-
 
NC_013947  Snas_2756  transcriptional regulator, RpiR family  51.52 
 
 
298 aa  261  1e-68  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.688512  normal 
 
 
-
 
NC_013510  Tcur_4022  transcriptional regulator, RpiR family  49.82 
 
 
320 aa  254  8e-67  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0204031  n/a   
 
 
-
 
NC_013159  Svir_35980  transcriptional regulator, RpiR family  49.82 
 
 
333 aa  249  3e-65  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.309329  normal  0.261129 
 
 
-
 
NC_007333  Tfu_2323  putative transcriptional regulator  45.85 
 
 
315 aa  248  9e-65  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4516  transcriptional regulator, RpiR family  49.64 
 
 
322 aa  245  4.9999999999999997e-64  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.937314 
 
 
-
 
NC_014210  Ndas_0475  transcriptional regulator, RpiR family  47.84 
 
 
327 aa  241  1e-62  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.227753  normal 
 
 
-
 
NC_009953  Sare_3960  RpiR family transcriptional regulator  46.72 
 
 
304 aa  228  1e-58  Salinispora arenicola CNS-205  Bacteria  normal  0.162661  normal  0.59815 
 
 
-
 
NC_013093  Amir_0269  transcriptional regulator, RpiR family  45.79 
 
 
304 aa  217  2e-55  Actinosynnema mirum DSM 43827  Bacteria  normal  0.409833  n/a   
 
 
-
 
NC_013947  Snas_3507  transcriptional regulator, RpiR family  45.79 
 
 
342 aa  213  3.9999999999999995e-54  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0619346 
 
 
-
 
NC_013595  Sros_5684  putative transcriptional regulator, RpiR family  43.46 
 
 
299 aa  209  5e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0287132  normal  0.474804 
 
 
-
 
NC_012669  Bcav_0151  transcriptional regulator, RpiR family  43.3 
 
 
299 aa  190  2e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.15102  normal 
 
 
-
 
NC_003909  BCE_2295  RpiR family transcriptional regulator  37.92 
 
 
284 aa  180  2e-44  Bacillus cereus ATCC 10987  Bacteria  normal  0.651664  n/a   
 
 
-
 
NC_011725  BCB4264_A2246  transcriptional regulator, RpiR family  37.92 
 
 
284 aa  179  2.9999999999999997e-44  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3077  transcriptional regulator, RpiR family  37.92 
 
 
284 aa  179  4e-44  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.0000143664 
 
 
-
 
NC_009953  Sare_3209  RpiR family transcriptional regulator  40.15 
 
 
320 aa  179  5.999999999999999e-44  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_1662  RpiR family transcriptional regulator  37.17 
 
 
284 aa  176  3e-43  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.574027  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2088  RpiR family transcriptional regulator  36.8 
 
 
284 aa  174  9.999999999999999e-43  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0949278  n/a   
 
 
-
 
NC_013947  Snas_2853  transcriptional regulator, RpiR family  39.85 
 
 
316 aa  174  1.9999999999999998e-42  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.543302 
 
 
-
 
NC_013595  Sros_2045  putative transcriptional regulator, RpiR family  42.45 
 
 
291 aa  171  1e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_2984  sugar isomerase (SIS)  41.89 
 
 
319 aa  164  1.0000000000000001e-39  Salinispora tropica CNB-440  Bacteria  normal  normal  0.389067 
 
 
-
 
NC_010320  Teth514_0168  RpiR family transcriptional regulator  34.32 
 
 
280 aa  164  2.0000000000000002e-39  Thermoanaerobacter sp. X514  Bacteria  normal  0.057217  n/a   
 
 
-
 
NC_013947  Snas_2753  transcriptional regulator, RpiR family  39.21 
 
 
304 aa  162  4.0000000000000004e-39  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1348  transcriptional regulator, RpiR family  36.86 
 
 
307 aa  160  2e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.478547  normal  0.506779 
 
 
-
 
NC_011661  Dtur_1776  transcriptional regulator, RpiR family  35.25 
 
 
281 aa  160  2e-38  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0696  RpiR family transcriptional regulator  31.45 
 
 
289 aa  156  3e-37  Haemophilus somnus 129PT  Bacteria  hitchhiker  0.000925251  n/a   
 
 
-
 
NC_011312  VSAL_I0898  HTH-type transcriptional regulator, rpiR family  31.91 
 
 
292 aa  153  2.9999999999999998e-36  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.679683  n/a   
 
 
-
 
NC_013517  Sterm_2433  transcriptional regulator, RpiR family  29.96 
 
 
282 aa  152  7e-36  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00000784459  n/a   
 
 
-
 
NC_007951  Bxe_A0588  RpiR family transcriptional regulator  35.14 
 
 
273 aa  150  3e-35  Burkholderia xenovorans LB400  Bacteria  normal  0.189062  normal 
 
 
-
 
NC_010159  YpAngola_A2771  RpiR family transcriptional regulator  36.36 
 
 
292 aa  149  7e-35  Yersinia pestis Angola  Bacteria  normal  hitchhiker  0.00114132 
 
 
-
 
NC_010465  YPK_1406  RpiR family transcriptional regulator  36.36 
 
 
292 aa  148  9e-35  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1297  RpiR family transcriptional regulator  36.36 
 
 
292 aa  148  9e-35  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1122  RpiR family transcriptional regulator  33.46 
 
 
285 aa  147  2.0000000000000003e-34  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3371  transcriptional regulator, RpiR family  33.57 
 
 
281 aa  147  3e-34  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0964604  hitchhiker  0.00000000707391 
 
 
-
 
NC_007794  Saro_1547  RpiR family transcriptional regulator  36.26 
 
 
296 aa  142  5e-33  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0668  RpiR family transcriptional regulator  31.58 
 
 
287 aa  142  8e-33  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0593  RpiR family transcriptional regulator  31.58 
 
 
280 aa  141  9.999999999999999e-33  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.0000000590128  n/a   
 
 
-
 
NC_010483  TRQ2_0607  RpiR family transcriptional regulator  31.58 
 
 
280 aa  141  9.999999999999999e-33  Thermotoga sp. RQ2  Bacteria  normal  0.173614  n/a   
 
 
-
 
NC_013457  VEA_001002  transcriptional regulator RpiR family  33.71 
 
 
283 aa  137  1e-31  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0283  transcriptional regulator, RpiR family  33.21 
 
 
279 aa  137  2e-31  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0731  RpiR family transcriptional regulator  30.04 
 
 
287 aa  136  3.0000000000000003e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4460  putative transcriptional regulator, RpiR family  29.47 
 
 
287 aa  136  3.0000000000000003e-31  Bacillus cereus G9842  Bacteria  normal  normal  0.857974 
 
 
-
 
NC_012793  GWCH70_1468  transcriptional regulator, RpiR family  31.92 
 
 
286 aa  136  4e-31  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000610661  n/a   
 
 
-
 
NC_013421  Pecwa_2115  DNA-binding transcriptional regulator HexR  33.22 
 
 
308 aa  135  7.000000000000001e-31  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7367  DNA-binding transcriptional repressor RpiR  33.45 
 
 
291 aa  135  8e-31  Agrobacterium vitis S4  Bacteria  normal  0.276033  n/a   
 
 
-
 
NC_011094  SeSA_A1192  transcriptional regulator, RpiR family  33.07 
 
 
293 aa  134  9.999999999999999e-31  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.497061  normal  0.760306 
 
 
-
 
NC_011773  BCAH820_0917  putative transcriptional regulator, RpiR family  29.33 
 
 
287 aa  134  1.9999999999999998e-30  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  3.47337e-41 
 
 
-
 
NC_011205  SeD_A1202  RpiR family transcriptional regulator  33.07 
 
 
293 aa  134  1.9999999999999998e-30  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.658823 
 
 
-
 
NC_005945  BAS0782  RpiR family transcriptional regulator  29.33 
 
 
287 aa  134  1.9999999999999998e-30  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0731  RpiR family transcriptional regulator  29.33 
 
 
287 aa  134  1.9999999999999998e-30  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0821  RpiR family transcriptional regulator  29.33 
 
 
287 aa  134  1.9999999999999998e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1237  RpiR family transcriptional regulator  33.07 
 
 
293 aa  134  1.9999999999999998e-30  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.676137 
 
 
-
 
NC_011658  BCAH187_A0986  putative transcriptional regulator, RpiR family  29.33 
 
 
287 aa  134  1.9999999999999998e-30  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A1222  RpiR family transcriptional regulator  33.07 
 
 
293 aa  134  1.9999999999999998e-30  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.514843 
 
 
-
 
NC_011725  BCB4264_A0875  putative transcriptional regulator, RpiR family  29.33 
 
 
287 aa  134  1.9999999999999998e-30  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3564  RpiR family transcriptional regulator  29.66 
 
 
284 aa  134  1.9999999999999998e-30  Clostridium phytofermentans ISDg  Bacteria  normal  0.536409  n/a   
 
 
-
 
NC_009656  PSPA7_6227  putative transcriptional regulator  34.75 
 
 
293 aa  134  1.9999999999999998e-30  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2581  RpiR family transcriptional regulator  33.59 
 
 
278 aa  133  3.9999999999999996e-30  Burkholderia phymatum STM815  Bacteria  normal  0.0624506  hitchhiker  0.000000255705 
 
 
-
 
NC_008463  PA14_71780  RpiR family transcriptional regulator  34.4 
 
 
293 aa  132  5e-30  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_02030  transcriptional regulatory protein HexR  34.34 
 
 
288 aa  132  6e-30  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0912  RpiR family transcriptional regulator  29.33 
 
 
287 aa  132  7.999999999999999e-30  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0717  RpiR family transcriptional regulator  29.33 
 
 
287 aa  132  7.999999999999999e-30  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_1050  transcriptional regulator, RpiR family  28.3 
 
 
272 aa  132  7.999999999999999e-30  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A2584  hypothetical protein  32.83 
 
 
282 aa  132  9e-30  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1831  DNA-binding transcriptional regulator HexR  32.52 
 
 
289 aa  132  9e-30  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.197793  n/a   
 
 
-
 
NC_010003  Pmob_0521  RpiR family transcriptional regulator  32.42 
 
 
283 aa  132  1.0000000000000001e-29  Petrotoga mobilis SJ95  Bacteria  normal  0.207231  n/a   
 
 
-
 
NC_007951  Bxe_A3454  bifunctional glucokinase/RpiR family transcriptional regulator  33.69 
 
 
638 aa  131  1.0000000000000001e-29  Burkholderia xenovorans LB400  Bacteria  normal  0.0454105  normal  0.179776 
 
 
-
 
NC_009485  BBta_1162  RpiR family transcriptional regulator  32.22 
 
 
270 aa  131  1.0000000000000001e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.164823  normal 
 
 
-
 
NC_007347  Reut_A1080  RpiR family transcriptional regulator  34.27 
 
 
318 aa  130  2.0000000000000002e-29  Ralstonia eutropha JMP134  Bacteria  normal  0.0801962  n/a   
 
 
-
 
NC_009439  Pmen_4485  RpiR family transcriptional regulator  33.96 
 
 
288 aa  130  2.0000000000000002e-29  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5350  RpiR family transcriptional regulator  33.58 
 
 
288 aa  130  3e-29  Pseudomonas putida KT2440  Bacteria  normal  0.767126  hitchhiker  0.00410686 
 
 
-
 
NC_009512  Pput_5258  RpiR family transcriptional regulator  33.58 
 
 
288 aa  130  3e-29  Pseudomonas putida F1  Bacteria  normal  normal  0.658899 
 
 
-
 
NC_008836  BMA10229_A2612  bifunctional glucokinase/RpiR family transcriptional regulator  34.21 
 
 
620 aa  130  4.0000000000000003e-29  Burkholderia mallei NCTC 10229  Bacteria  normal  0.85018  n/a   
 
 
-
 
NC_007434  BURPS1710b_3090  bifunctional glucokinase/RpiR family transcriptional regulator  34.21 
 
 
641 aa  129  4.0000000000000003e-29  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1550  bifunctional glucokinase/RpiR family transcriptional regulator  34.21 
 
 
641 aa  129  4.0000000000000003e-29  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2002  bifunctional glucokinase/RpiR family transcriptional regulator  34.21 
 
 
620 aa  130  4.0000000000000003e-29  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3001  bifunctional glucokinase/RpiR family transcriptional regulator  34.21 
 
 
641 aa  129  4.0000000000000003e-29  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3055  bifunctional glucokinase/RpiR family transcriptional regulator  34.21 
 
 
641 aa  129  4.0000000000000003e-29  Burkholderia pseudomallei 1106a  Bacteria  normal  0.570164  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0778  bifunctional glucokinase/RpiR family transcriptional regulator  34.21 
 
 
620 aa  130  4.0000000000000003e-29  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1993  transcriptional regulator, RpiR family  27.72 
 
 
280 aa  129  5.0000000000000004e-29  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2023  DNA-binding transcriptional regulator HexR  32.17 
 
 
289 aa  129  5.0000000000000004e-29  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.197371  n/a   
 
 
-
 
NC_010501  PputW619_5127  RpiR family transcriptional regulator  33.58 
 
 
288 aa  129  5.0000000000000004e-29  Pseudomonas putida W619  Bacteria  normal  normal  0.334763 
 
 
-
 
NC_010084  Bmul_2433  bifunctional glucokinase/RpiR family transcriptional regulator  33.69 
 
 
642 aa  129  5.0000000000000004e-29  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.399098  normal 
 
 
-
 
NC_010322  PputGB1_5399  RpiR family transcriptional regulator  33.58 
 
 
288 aa  129  5.0000000000000004e-29  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0126961 
 
 
-
 
NC_006348  BMA2132  bifunctional glucokinase/RpiR family transcriptional regulator  34.21 
 
 
641 aa  129  6e-29  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0625  bifunctional glucokinase/RpiR family transcriptional regulator  34.21 
 
 
639 aa  129  6e-29  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_2135  DNA-binding transcriptional regulator HexR  32.17 
 
 
301 aa  129  6e-29  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2413  DNA-binding transcriptional regulator HexR  32.17 
 
 
301 aa  129  6e-29  Yersinia pestis Angola  Bacteria  hitchhiker  0.000012699  normal 
 
 
-
 
NC_012880  Dd703_2137  DNA-binding transcriptional regulator HexR  32.52 
 
 
289 aa  128  8.000000000000001e-29  Dickeya dadantii Ech703  Bacteria  hitchhiker  0.00439922  n/a   
 
 
-
 
NC_013203  Apar_1200  transcriptional regulator, RpiR family  31.52 
 
 
304 aa  129  8.000000000000001e-29  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1025  bifunctional glucokinase/RpiR family transcriptional regulator  33.33 
 
 
638 aa  128  9.000000000000001e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  0.745776  normal  0.175715 
 
 
-
 
NC_004578  PSPTO_5515  transcriptional regulator, RpiR family  33.58 
 
 
288 aa  128  1.0000000000000001e-28  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2245  DNA-binding transcriptional regulator HexR  32.17 
 
 
289 aa  128  1.0000000000000001e-28  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_0250  DNA-binding transcriptional repressor RpiR  31.45 
 
 
287 aa  128  1.0000000000000001e-28  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0770  transcriptional regulator, RpiR family  39.11 
 
 
296 aa  128  1.0000000000000001e-28  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000975666  hitchhiker  0.00454433 
 
 
-
 
NC_007510  Bcep18194_A4068  bifunctional glucokinase/RpiR family transcriptional regulator  33.83 
 
 
642 aa  127  2.0000000000000002e-28  Burkholderia sp. 383  Bacteria  normal  0.0150237  normal 
 
 
-
 
NC_007963  Csal_3272  RpiR family transcriptional regulator  33.69 
 
 
289 aa  127  2.0000000000000002e-28  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.854433  n/a   
 
 
-
 
NC_007973  Rmet_1044  RpiR family transcriptional regulator  35.02 
 
 
338 aa  127  2.0000000000000002e-28  Cupriavidus metallidurans CH34  Bacteria  normal  0.408154  normal  0.734102 
 
 
-
 
NC_008390  Bamb_0825  bifunctional glucokinase/RpiR family transcriptional regulator  33.83 
 
 
642 aa  127  2.0000000000000002e-28  Burkholderia ambifaria AMMD  Bacteria  normal  0.125163  n/a   
 
 
-
 
NC_008541  Arth_1799  RpiR family transcriptional regulator  30.48 
 
 
309 aa  127  2.0000000000000002e-28  Arthrobacter sp. FB24  Bacteria  normal  0.0151884  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>