| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2049 |
|---|
| Symbol | |
|---|
| ID | 4923733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2365393 |
|---|
| End bp | 2366247 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640163624 |
|---|
| Product | DNA-binding transcriptional regulator HexR |
|---|
| Protein accession | YP_001094174 |
|---|
| Protein GI | 127512977 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000665792 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.388652 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCC TAGAAAAGGT TCAGAAAAAC CTAACACATT TCAGTAAGTC GGAACGTAAA
GTGGCTGAGG TGATCCTGGC GTCACCACAA ACCGCGATTC ACTCCAGCAT CGCCACCCTG
GCTAAGATGG CCGACGTGAG TGAGCCTACT GTGAACCGCT TCTGCCGCCG TCTCGACACT
AAAGGCTTCC CCGATTTTAA GCTGCACTTA GCTCAGAGCC TGGCCAACGG TACGCCTTAT
GTCAGTCGCC ACGTCGAAGA AGACGACAGC CCAGACTCCT ACACCACTAA GATCTTCGAG
TCTTCAATGG CGGCACTGGA TACCGCCAGA CAGAGCATGG ACACGGCAGC CATCAATAAG
GCGGTCGACA TTCTTACTCA GGCAAAGAAG ATCTCCTTCT TTGGCCTTGG CGCCTCGGCC
TCTGTTGCCC ATGACGCACA GAACAAATTT TTCCGCTTCA ACGTGCCTGT GATCTGCTTC
GACGATGTCT TGATGCAACG CATGAGTTGT ATCAACAGCA GCGAAGGCGA CGTCGTGGTG
TTGATCAGCC ACACAGGCCG TACCAAGTCA CTGATTGATA TCGCCCGCCT AGCCCGTGAG
AACGGCGCCG CAGTGATCGC CATCACCTCT CGTAACTCAC CGCTGAGCGC CGAATGTACC
CTGCCAGTGA CCATGGAAGT CCCCGAAGAT ACCGACATGT ATCTGCCCAT GGCTTCACGC
CTGGCTCAAC TGGTCATTGT CGACGTATTG GCAACCGGTT TTACCCTGCG CCGCGGCCCA
CGTTTCAGAG AGAGTTTGAA GCGGGTAAAA GAGGTGTTGA AAGAGTCTCG CATCGACAAA
GAAGCGACAC TATAG
|
|---|
| Protein sequence | MNTLEKVQKN LTHFSKSERK VAEVILASPQ TAIHSSIATL AKMADVSEPT VNRFCRRLDT
KGFPDFKLHL AQSLANGTPY VSRHVEEDDS PDSYTTKIFE SSMAALDTAR QSMDTAAINK
AVDILTQAKK ISFFGLGASA SVAHDAQNKF FRFNVPVICF DDVLMQRMSC INSSEGDVVV
LISHTGRTKS LIDIARLARE NGAAVIAITS RNSPLSAECT LPVTMEVPED TDMYLPMASR
LAQLVIVDVL ATGFTLRRGP RFRESLKRVK EVLKESRIDK EATL
|
|---|
| |