| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0898 |
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| Symbol | |
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| ID | 6986716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 999132 |
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| End bp | 1000010 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 643379297 |
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| Product | HTH-type transcriptional regulator, rpiR family |
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| Protein accession | YP_002262400 |
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| Protein GI | 209694472 |
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| COG category | [K] Transcription |
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| COG ID | [COG1737] Transcriptional regulators |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.679683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCAACC ATCATATTCA AATCAAAGCT GGCAATATCA TTGATATGAT AGGCAGTCTT
TATAATAGCT TAACGCCATC ATCAAAACGC ATTGCTGATT ATGTTATGGC TAACGCGACA
CAAGTGAGCA AGCACTCTAT TGCAGAGTTA TCACAGATCG TTAATGCGGG TGATGCGACC
ATCATTCGTT TTTGTCGTAC TTTAGGATTT AAAGGCTACC AAGATTTTAA AATGGAACTT
GCGATTGAAG TGTCTAATCT TCAAGGTCGC GAAAAAGAAA TTTTTGATAC GGATGTGACT
GCGGAAGATA ATGCGGAAGT CATAGGGCAC AAACTTCAAG CTACGATTGA AAGTGTATTG
TCAGAGACCA TGAACTTACT TAATTTTCAG TCTTTGGAGT TGGTAGCAGA AGCATTAAAA
GATGCGAAAG CGATTTATTT TTTTGGGGTT GGTTCTTCTG GATTAACGGC AGAAAGCGCA
AAGCATAAGT TTATGCGAAT TGGTCTAAAT GTAGATGCAT TTACCAATAA TCATTTTATG
TATGTAAAGT CATCGCTAAT GCAACCTGGC GATTTTGCTG TGGGTATTAG CCATTCTGGG
TGTTCAGTCG AAACGACTAA AGCGTTGCGT TTAGCCAAAG ATAACGGGGC TACGACGATT
GCGATAACCC ATAACCCACG CTCTGATATT ACTAAGTATT CTGATTACGT GTTGGTTAAT
GGCAATAGAC AAGGCCAATT ACAAGGTGAT TCTATTGGTA CGAAAATTTC ACAGTTATTT
GTATTGGATT TAATTTATAC CTTATTAGTG AAACGAGACA TCAATGGTGC AAAAGCCAAT
AAATTGAAGA CAACGGAAGC GTTGTGTCAT AAATCCTAA
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| Protein sequence | MSNHHIQIKA GNIIDMIGSL YNSLTPSSKR IADYVMANAT QVSKHSIAEL SQIVNAGDAT
IIRFCRTLGF KGYQDFKMEL AIEVSNLQGR EKEIFDTDVT AEDNAEVIGH KLQATIESVL
SETMNLLNFQ SLELVAEALK DAKAIYFFGV GSSGLTAESA KHKFMRIGLN VDAFTNNHFM
YVKSSLMQPG DFAVGISHSG CSVETTKALR LAKDNGATTI AITHNPRSDI TKYSDYVLVN
GNRQGQLQGD SIGTKISQLF VLDLIYTLLV KRDINGAKAN KLKTTEALCH KS
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