Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_1541 |
Symbol | |
ID | 5170631 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | + |
Start bp | 1531206 |
End bp | 1532006 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640564068 |
Product | RpiR family transcriptional regulator |
Protein accession | YP_001245125 |
Protein GI | 148270665 |
COG category | [K] Transcription |
COG ID | [COG1737] Transcriptional regulators |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000907266 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGAAAATAA AAGATAAGAT CCTGAACGTT TACACACAGC TCAGTCCCGC AGAGCGCAGA GTAGCGGATT ACGTACTCGA AAGACCGGAC GACGTCATTC ACTACTCGAT CACAGAATTC GCAAAGATCG TGGGTGTGAG CGAGACCACG ATTCACAGGA TGATCAAAAA GCTCGATTTC GAGGGATACC AGGCCTTCAA GATCGCACTT GCAAGGGAAC TCAGCGGGAT CGAAGAAACC ATAGAAAGAA GAGATTTCAT AGACGAGGAG ATAGACATCC TCAGAAGGCT CAAGGACACT CTCGATATGA AGAATGTGGA AAAGGCCGTG GAGTGGATAC TCTCCGCCCA TCGAATTCTC TTCTTCGGCG TGGGACTCTC GGGAGTGGTT TCTGAGTACG CGAGTCTGAA GTTCTCTCTT CTTGGTTTCC ACACGTTCTT TTCCAACGAT CCTCACGTTC AGGTGATAGA GGCCGTGAAT CTGACCGGCG ATGATCTTGT GATCTCGATC AGTCACACAG GAAACATCAG AGACACGGTG AAATCCACCC AGGTTGCGAA AGACATGGGA GCGAAGACGA TCGCAATTAC AACGAACAGA CAGTCTGAGC TCGCCAGGGT GGCTCATCTG GTGCTTCAAA GCCCGCCTGT GAAATACGAC ACCTACGAAT TCCTCAGAGA GAACATCGGA GAGATCGCCG TTGTGGATGT GCTCTTCAAA GAGACGTTTC AGAGAATATA CCGGGAGAGA AAGAAGCACT TCGAGAACCT GGAGGGAGTG TTCAAACCGA AGAGATTCTG A
|
Protein sequence | MKIKDKILNV YTQLSPAERR VADYVLERPD DVIHYSITEF AKIVGVSETT IHRMIKKLDF EGYQAFKIAL ARELSGIEET IERRDFIDEE IDILRRLKDT LDMKNVEKAV EWILSAHRIL FFGVGLSGVV SEYASLKFSL LGFHTFFSND PHVQVIEAVN LTGDDLVISI SHTGNIRDTV KSTQVAKDMG AKTIAITTNR QSELARVAHL VLQSPPVKYD TYEFLRENIG EIAVVDVLFK ETFQRIYRER KKHFENLEGV FKPKRF
|
| |