Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_35980 |
Symbol | |
ID | 8388919 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 3922624 |
End bp | 3923625 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644977613 |
Product | transcriptional regulator, RpiR family |
Protein accession | YP_003135380 |
Protein GI | 257057548 |
COG category | [K] Transcription |
COG ID | [COG1737] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.309329 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.261129 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGAGCAAC CAACGAACGA AACCGCCACG GTGTCCGAGC CCTCCGAATC GCCCGAGTCG ACGACACGGT CCGAACCGGT CGACTCGTCC AAACCGGCGG GGTCGGAGGC AAGCCCCCTC GTGCGCATCC GCTCGTTGCT CCCGGGTCTT GCCCGCGCGG AACAACGGGT CGCCAAAGTC GTGCTGGAAG ACCCCTCCTC GGTCGCGCGT CGCAGCATCA CCGAGGTCGC CATGGCCGCC AAGACCAGCG AAACCACCGT CACCAGGTTC TGCAAGGCCA TCGGCGTCGG CGGCTATCCG CAGCTTCGCA TCGCACTCGC CGCCGACACG GCGCGTACCG AGGCCAAATC CTCCCGGGAT CTGGGTGGCG ACATCACGGC CGACGACGAT CTGGCCTCGG TCGTGAGCAA GGTCAGTTTC GCCGACGCCC GGGCCGTCGA GGAGACCGCC GAACAGCTCG ACATCGCCGA ACTCACGCGC GTCACCGAAC TGCTCGCCGA AGCGACCCGG GTCGACGTCT ACGGCGTGGG CGCCAGCGCG TTCGTCGCCG CCGATCTGCA ACAGAAGCTG CACCGCATCG GCCGGGTCTC GTTCGCCTGG TCCGACACGC ACATCATGCT GACCTCGGCG GCCGTGCTCT CCGAAGGCGA CGTCGCGGTG GCGATCTCCC ACTCCGGCGC CACCACCGAC ACGGTGGAGG CTCTACGAGT GGCCAAGGAA CACGGGGCCA CCACCGTGGC GATCACCAAC TTCCCGAGGT CGCCGATCGC CTCCGTCGCC GATCACGTAC TCACCACGGC GGCACGGGAG ACGACGTTCC GTTCCGGCGC CACAGCCAGC CGCATCGCAC AGCTCACCGT GATCGATTGC CTGTTCATCG GCGTGGCGCA GCGACGCATG GACGAATCGA TGGCGGCGCT GGAAGCCACC CGCGAGGCCG TCAACGGGCA TCGACTCGGC ATCCGTCCGG ACGGAAGGCG GCGAACCCTA CAGGACCGGT AA
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Protein sequence | MEQPTNETAT VSEPSESPES TTRSEPVDSS KPAGSEASPL VRIRSLLPGL ARAEQRVAKV VLEDPSSVAR RSITEVAMAA KTSETTVTRF CKAIGVGGYP QLRIALAADT ARTEAKSSRD LGGDITADDD LASVVSKVSF ADARAVEETA EQLDIAELTR VTELLAEATR VDVYGVGASA FVAADLQQKL HRIGRVSFAW SDTHIMLTSA AVLSEGDVAV AISHSGATTD TVEALRVAKE HGATTVAITN FPRSPIASVA DHVLTTAARE TTFRSGATAS RIAQLTVIDC LFIGVAQRRM DESMAALEAT REAVNGHRLG IRPDGRRRTL QDR
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