Gene Svir_35980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_35980 
Symbol 
ID8388919 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp3922624 
End bp3923625 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content68% 
IMG OID644977613 
Producttranscriptional regulator, RpiR family 
Protein accessionYP_003135380 
Protein GI257057548 
COG category[K] Transcription 
COG ID[COG1737] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.309329 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.261129 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAGCAAC CAACGAACGA AACCGCCACG GTGTCCGAGC CCTCCGAATC GCCCGAGTCG 
ACGACACGGT CCGAACCGGT CGACTCGTCC AAACCGGCGG GGTCGGAGGC AAGCCCCCTC
GTGCGCATCC GCTCGTTGCT CCCGGGTCTT GCCCGCGCGG AACAACGGGT CGCCAAAGTC
GTGCTGGAAG ACCCCTCCTC GGTCGCGCGT CGCAGCATCA CCGAGGTCGC CATGGCCGCC
AAGACCAGCG AAACCACCGT CACCAGGTTC TGCAAGGCCA TCGGCGTCGG CGGCTATCCG
CAGCTTCGCA TCGCACTCGC CGCCGACACG GCGCGTACCG AGGCCAAATC CTCCCGGGAT
CTGGGTGGCG ACATCACGGC CGACGACGAT CTGGCCTCGG TCGTGAGCAA GGTCAGTTTC
GCCGACGCCC GGGCCGTCGA GGAGACCGCC GAACAGCTCG ACATCGCCGA ACTCACGCGC
GTCACCGAAC TGCTCGCCGA AGCGACCCGG GTCGACGTCT ACGGCGTGGG CGCCAGCGCG
TTCGTCGCCG CCGATCTGCA ACAGAAGCTG CACCGCATCG GCCGGGTCTC GTTCGCCTGG
TCCGACACGC ACATCATGCT GACCTCGGCG GCCGTGCTCT CCGAAGGCGA CGTCGCGGTG
GCGATCTCCC ACTCCGGCGC CACCACCGAC ACGGTGGAGG CTCTACGAGT GGCCAAGGAA
CACGGGGCCA CCACCGTGGC GATCACCAAC TTCCCGAGGT CGCCGATCGC CTCCGTCGCC
GATCACGTAC TCACCACGGC GGCACGGGAG ACGACGTTCC GTTCCGGCGC CACAGCCAGC
CGCATCGCAC AGCTCACCGT GATCGATTGC CTGTTCATCG GCGTGGCGCA GCGACGCATG
GACGAATCGA TGGCGGCGCT GGAAGCCACC CGCGAGGCCG TCAACGGGCA TCGACTCGGC
ATCCGTCCGG ACGGAAGGCG GCGAACCCTA CAGGACCGGT AA
 
Protein sequence
MEQPTNETAT VSEPSESPES TTRSEPVDSS KPAGSEASPL VRIRSLLPGL ARAEQRVAKV 
VLEDPSSVAR RSITEVAMAA KTSETTVTRF CKAIGVGGYP QLRIALAADT ARTEAKSSRD
LGGDITADDD LASVVSKVSF ADARAVEETA EQLDIAELTR VTELLAEATR VDVYGVGASA
FVAADLQQKL HRIGRVSFAW SDTHIMLTSA AVLSEGDVAV AISHSGATTD TVEALRVAKE
HGATTVAITN FPRSPIASVA DHVLTTAARE TTFRSGATAS RIAQLTVIDC LFIGVAQRRM
DESMAALEAT REAVNGHRLG IRPDGRRRTL QDR